CCA14 dark late

4.0:Analysis result - correlation network

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Module-based correlation network(MCN) centered on CCA14 dark late

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List of experiments correlated with "CCA14 dark late"

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Score	Experiment	Correlation from CCA14 dark late	Correlation to CCA14 dark late	Control Experiment	Treatment	Tissue	Link to original data	Experimental Category
1	CCA14 dark late	1.00 >More info	1.00 >More info	Col dark late			Original data	GEO bulk
2	CCA14 dark early	0.69 >More info	0.78 >More info	Col dark early			Original data	GEO bulk
3	etiolated cop1BBX22-GFPox	-0.59 >More info	-0.67 >More info	etiolated Col-0		whole seedlings	Original data	GEO bulk
4	Col-0 shade	0.46 >More info	0.76 >More info	Col-0 light		seedlings	Original data	GEO bulk
5	WT Red light 18h	-0.56 >More info	-0.65 >More info	WT Dark 18h		deetiolated seedling	Original data	GEO bulk
6	35S:LOB-GR mock	-0.71 >More info	-0.46 >More info	Col mock	mock	seedling	Original data	GEO bulk
7	IAA 1 h	0.48 >More info	0.69 >More info	Mock 1 h			Original data	Basic hormone treatment of seedlings
8	WT(Ler) Rc50	-0.52 >More info	-0.64 >More info	WT(Ler) Dark			Original data	GEO bulk
9	pif5 high R/FR	-0.32 >More info	-0.84 >More info	Col-0 high R/FR	high R/FR	seedlings	Original data	GEO bulk
10	35S:LOB-GR DEX	-0.65 >More info	-0.50 >More info	Col DEX	dexamethasone	seedling	Original data	GEO bulk
11	WT Rc50	-0.50 >More info	-0.62 >More info	WT Dark	red light	whole seedling	Original data	GEO bulk
12	TNT-seedlings	0.27 >More info	0.82 >More info	DMF-control-seedlings	TNT-treated-seedlings	whole plant	Original data	GEO bulk
13	Light 4h polysome-bound	-0.52 >More info	-0.56 >More info	Dark polysome-bound	white light	seedlings (aerial parts)	Original data	GEO bulk
14	Mutant sav3-2 (SH)	-0.49 >More info	-0.59 >More info	Col-0 (SH)			Original data	GEO bulk
15	sav3-2 shade	-0.49 >More info	-0.59 >More info	Col-0 shade		seedlings	Original data	GEO bulk
16	low R/FR mock spray	0.40 >More info	0.67 >More info	high R/FR mock spray	low R/FR mock spray		Original data	GEO bulk
17	Light 4h steady-state	-0.50 >More info	-0.56 >More info	Dark steady-state	white light	seedlings (aerial parts)	Original data	GEO bulk
18	WT(Ler) Rc15	-0.49 >More info	-0.57 >More info	WT(Ler) Dark			Original data	GEO bulk
19	piffq FR 3h	-0.48 >More info	-0.56 >More info	WT FR 3h		whole seedling	Original data	GEO bulk
20	WT light	-0.45 >More info	-0.58 >More info	WT dark			Original data	GEO bulk
21	Red/FR Light 4 h	0.40 >More info	0.62 >More info	FarRed Light 4 h			Original data	Light treatments
22	IAA 3 h	0.47 >More info	0.54 >More info	Mock 3 h			Original data	Basic hormone treatment of seedlings
23	phyAphyB Dark	0.38 >More info	0.63 >More info	phyB Dark			Original data	GEO bulk
24	phyB Dark	-0.38 >More info	-0.63 >More info	WT(Ler) Dark			Original data	GEO bulk
25	pif4pif5 high R/FR	-0.34 >More info	-0.66 >More info	Col-0 high R/FR	high R/FR	seedlings	Original data	GEO bulk
26	Nicotinamide-69hr	0.64 >More info	0.35 >More info	WT-untreated-69hr	nicotinamide	aerial tissue	Original data	GEO bulk
27	csn4-1 mutant	-0.49 >More info	-0.50 >More info	WT dark			Original data	GEO bulk
28	C24-1h IAA	0.52 >More info	0.46 >More info	C24-0h IAA		whole plant	Original data	GEO bulk
29	low R/FR JA spray	0.35 >More info	0.63 >More info	high R/FR JA spray	low R/FR JA spray		Original data	GEO bulk
30	Mutant cry1 (High Light)	0.50 >More info	0.47 >More info	Col-0 (High Light)			Original data	GEO bulk
31	cop1 Seedling BL+ABA	-0.54 >More info	-0.43 >More info	WT Seedling BL+ABA			Original data	GEO bulk
32	cry1 high light	0.50 >More info	0.47 >More info	Col-O high light			Original data	GEO bulk
33	FarRed Light 4 h	-0.31 >More info	-0.65 >More info	White Light 4 h			Original data	Light treatments
34	GR-bdl DEX IAA	-0.42 >More info	-0.54 >More info	GR-bdl IAA			Original data	GEO bulk
35	WT NAA 2h	0.25 >More info	0.70 >More info	WT 0h		Leaf tissue	Original data	GEO bulk
36	MPK6 ox Shoot Hypoxia	-0.45 >More info	-0.50 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
37	Col-0 low R/FR	0.29 >More info	0.66 >More info	Col-0 high R/FR	low R/FR	seedlings	Original data	GEO bulk
38	CabpBVR2	0.35 >More info	0.60 >More info	WT			Original data	GEO bulk
39	35SpBVR3	0.42 >More info	0.53 >More info	WT			Original data	GEO bulk
40	Mutant nph4-1	-0.58 >More info	-0.36 >More info	Col			Original data	GEO bulk
41	root longitudinal zone-3 pH 4.6	0.37 >More info	0.57 >More info	root longitudinal zone-3 pH 5.7			Original data	GEO bulk
42	Col whole leaf 6hpi	-0.54 >More info	-0.39 >More info	Col whole leaf 0h UI		whole leaf	Original data	GEO bulk
43	WT NAA 1h	0.26 >More info	0.67 >More info	WT 0h		Leaf tissue	Original data	GEO bulk
44	Light 0.5h polysome-bound	-0.27 >More info	-0.66 >More info	Dark polysome-bound	white light	seedlings (aerial parts)	Original data	GEO bulk
45	4C 7d	0.56 >More info	0.35 >More info	4C 0h			Original data	GEO bulk
46	swn-7	0.60 >More info	0.31 >More info	Col		whole plant	Original data	GEO bulk
47	Mutant iaa5_6_19	-0.58 >More info	-0.33 >More info	Col			Original data	GEO bulk
48	Red Light 45min	0.20 >More info	0.71 >More info	White Light 45min			Original data	Light treatments
49	Blue Light 4 h	-0.30 >More info	-0.60 >More info	White Light 4 h			Original data	Light treatments
50	Nicotinamide-65hr	0.71 >More info	0.18 >More info	WT-untreated-65hr	nicotinamide	aerial tissue	Original data	GEO bulk
51	IAA 0.5 h	0.32 >More info	0.57 >More info	Mock 0.5 h			Original data	Basic hormone treatment of seedlings
52	Mutant nph4-1_arf19-1 (IAA)	-0.54 >More info	-0.34 >More info	Col (IAA)			Original data	GEO bulk
53	Light 0.5h steady-state	-0.22 >More info	-0.66 >More info	Dark steady-state	white light	seedlings (aerial parts)	Original data	GEO bulk
54	piffq FR 1h	-0.60 >More info	-0.26 >More info	WT FR 1h		whole seedling	Original data	GEO bulk
55	Mutant nph4-1 (IAA)	-0.56 >More info	-0.29 >More info	Col (IAA)			Original data	GEO bulk
56	IAA Treated	0.35 >More info	0.50 >More info	Negative Control			Original data	GEO bulk
57	seed germinating in countinuous light 24h SL	0.17 >More info	0.67 >More info	Control for tissue data		seed	Original data	GEO bulk
58	Mature callus	-0.62 >More info	-0.22 >More info	Young callus		hypocotyls	Original data	GEO bulk
59	Chemically	0.08 >More info	0.76 >More info	Solvent	treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid	whole seedlings	Original data
60	Mutant arf2-6 (IAA)	0.56 >More info	0.27 >More info	Col (IAA)			Original data	GEO bulk
61	high-R:FR bud uppermost	-0.29 >More info	-0.54 >More info	low-R:FR bud uppermost	high R	rosette axillary bud n	Original data	GEO bulk
62	WT (Col-0) inflorescence moderate drought day 10	0.51 >More info	0.31 >More info	WT (Col-0) inflorescence well-watered day 0 [C02]		Unopen flower buds	Original data
63	Laer pretreat GA Flg22 1h	0.11 >More info	0.71 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
64	G3P	-0.23 >More info	-0.59 >More info	Mock		distal leaves	Original data	GEO bulk
65	CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold	0.54 >More info	0.26 >More info	CSP1 immonoprecipitated RNA 35S:HF-RPL18	12h cold (4C)	rosettes	Original data	GEO bulk
66	sav3-2 light	-0.53 >More info	-0.27 >More info	Col-0 light		seedlings	Original data	GEO bulk
67	Mutant sav3-2 (WL)	-0.53 >More info	-0.27 >More info	Col-0 (WL)			Original data	GEO bulk
68	aerial organ callus inducing medium 12 h	0.27 >More info	0.53 >More info	aerial organ callus inducing medium 0 h	12 hours after incubating on callus inducing medium	aerial organ explants	Original data	GEO bulk
69	SPT4-R3 seedlings0 DAS	-0.57 >More info	-0.22 >More info	Col-0 seedlings0 DAS		seedlings	Original data
70	HSP90 Reduced Salk hsp90.2	0.54 >More info	0.24 >More info	HSP90 Reduced Control		All aerial tissue	Original data	GEO bulk
71	WT (Col-0) inflorescence moderate drought day 5	0.57 >More info	0.21 >More info	WT (Col-0) inflorescence well-watered day 0 [C02]		Unopen flower buds	Original data
72	exo70A1	0.57 >More info	0.19 >More info	Col-0		whole plant	Original data	GEO bulk
73	FarRed Light 45min	0.10 >More info	0.66 >More info	White Light 45min			Original data	Light treatments
74	gtl1	-0.51 >More info	-0.24 >More info	WT		trichome	Original data	GEO bulk
75	WT (Col-0) inflorescence moderate drought day 4	0.50 >More info	0.25 >More info	WT (Col-0) inflorescence well-watered day 0 [C02]		Unopen flower buds	Original data
76	gtl1-1	-0.51 >More info	-0.24 >More info	WT		trichome	Original data	GEO bulk
77	Mutant nph4-1_arf19-1	-0.58 >More info	-0.15 >More info	Col			Original data	GEO bulk
78	Nicotinamide-93hr	0.58 >More info	0.15 >More info	WT-untreated-93hr	nicotinamide	aerial tissue	Original data	GEO bulk
79	Mutant siz1-3	-0.53 >More info	-0.19 >More info	Col-0			Original data	GEO bulk
80	Nicotinamide-89hr	0.65 >More info	0.07 >More info	WT-untreated-89hr	nicotinamide	aerial tissue	Original data	GEO bulk
81	siz1-3 control	-0.53 >More info	-0.19 >More info	Col-0 control			Original data	GEO bulk
82	COL-0-Fe--shoot	-0.57 >More info	-0.15 >More info	COL-0-Ctrl--shoot		shoot	Original data
83	CCA1-ox 6am non-polysomal	0.21 >More info	0.51 >More info	WT 6am non-polysomal		aerial part	Original data
84	Dark 40 min pls UV-A 5 min	-0.15 >More info	-0.56 >More info	Dark 45 min			Original data	Light treatments
85	Total RNA csp1 cold	0.51 >More info	0.20 >More info	Total RNA csp1	12h cold (4C)	rosettes	Original data	GEO bulk
86	npr1 sni1 ssn2 SA	-0.52 >More info	-0.19 >More info	npr1 sni1 SA	salicylic acid	seedling	Original data	GEO bulk
87	opr3 OPDA 0.5 h	-0.52 >More info	-0.19 >More info	opr3 0 h			Original data	GEO bulk
88	siliques AtHb1 control	0.19 >More info	0.52 >More info	siliques WT control	control	silique	Original data	GEO bulk
89	Ler KAR1 24h seed	-0.19 >More info	-0.51 >More info	Ler WATER 24h seed	KAR1	seed	Original data	GEO bulk
90	pho1	0.18 >More info	0.51 >More info	Col2WT			Original data	GEO bulk
91	Mutant iaa17-6	-0.54 >More info	-0.14 >More info	Col			Original data	GEO bulk
92	fri-flc	0.17 >More info	0.51 >More info	WT			Original data	GEO bulk
93	Col BTH	0.01 >More info	0.67 >More info	Col		rosettes	Original data	GEO bulk
94	Nicotinamide-85hr	0.50 >More info	0.17 >More info	WT-untreated-85hr	nicotinamide	aerial tissue	Original data	GEO bulk
95	hyl1	-0.52 >More info	-0.15 >More info	Col-0			Original data	GEO bulk
96	HSP90 Reduced Salk hsp90.1	0.51 >More info	0.16 >More info	HSP90 Reduced Control		All aerial tissue	Original data	GEO bulk
97	GA	-0.52 >More info	-0.15 >More info	none	GA	Rosette	Original data	GEO bulk
98	Cd 24h root	0.50 >More info	0.17 >More info	WT-Untreated		Shoot	Original data	GEO bulk
99	WT chitooctaose	-0.57 >More info	-0.10 >More info	WT water			Original data	GEO bulk
100	pab polysome	-0.67 >More info	0.01 >More info	WT polysome		seedling shoot/aerial seedling	Original data
101	WT Red light 1h	-0.12 >More info	-0.54 >More info	WT Dark 1h		deetiolated seedling	Original data	GEO bulk
102	Leafminer damaged seedlings	0.10 >More info	0.56 >More info	Healthy seedlings		leaves	Original data	GEO bulk
103	Dark 44min pls RedLigh 1min	-0.07 >More info	-0.59 >More info	Dark 45 min			Original data	Light treatments
104	CeO2 germinant	-0.01 >More info	-0.64 >More info	Millipore Water germinant	CeO2	seedling	Original data
105	npr1-3 MOCK 48h	0.59 >More info	0.05 >More info	Col-0 MOCK 48h			Original data	GEO bulk
106	root longitudinal zone-1 pH 4.6	0.55 >More info	0.09 >More info	root longitudinal zone-1 pH 5.7			Original data	GEO bulk
107	Shoot apex inflorescence (after bolting)	-0.01 >More info	0.65 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
108	WT (Col-0) inflorescence well-watered day 4	0.50 >More info	0.13 >More info	WT (Col-0) inflorescence well-watered day 0		Unopen flower buds	Original data	GEO bulk
109	root - 04% oxygen - 2h	-0.10 >More info	-0.53 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
110	Mutant arf19-1	-0.55 >More info	-0.07 >More info	Col			Original data	GEO bulk
111	seedling 12h after HZE atm-1	-0.51 >More info	-0.11 >More info	seedling day 1 unirradiated atm-1	12h		Original data
112	seedling 12h after HZE WT	-0.53 >More info	-0.07 >More info	seedling day 1 unirradiated WT	12h		Original data
113	coi1	-0.52 >More info	-0.08 >More info	Col-0		Leaves	Original data	GEO bulk
114	HSP90 Reduced Salk hsp90.3	0.61 >More info	-0.01 >More info	HSP90 Reduced Control		All aerial tissue	Original data	GEO bulk
115	IAA7mII over-expressor IAA Treated	-0.09 >More info	0.69 >More info	empty vector IAA Treated			Original data	GEO bulk
116	Col0-PsmES4326-24hpi	-0.01 >More info	0.61 >More info	Col0-mock-24hpi		leaf	Original data	GEO bulk
117	Nicotinamide-61hr	0.56 >More info	0.03 >More info	WT-untreated-61hr	nicotinamide	aerial tissue	Original data	GEO bulk
118	Heat shock optimum	-0.06 >More info	0.65 >More info	Heat shock baseline	Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
119	dcl2-1	0.52 >More info	0.06 >More info	Col-0			Original data	GEO bulk
120	AgNO3 3 h	0.06 >More info	0.52 >More info	Mock 3 h			Original data	Effect of ethylene inhibitors on seedlings
121	etiolated cop1	-0.62 >More info	0.04 >More info	etiolated Col-0		whole seedlings	Original data	GEO bulk
122	WT (Col-0) inflorescence well-watered day 3	0.55 >More info	0.02 >More info	WT (Col-0) inflorescence well-watered day 0		Unopen flower buds	Original data	GEO bulk
123	albino Ds13-2198-1	0.62 >More info	-0.05 >More info	control			Original data	GEO bulk
124	Whole root - low pH 48H	-0.05 >More info	-0.51 >More info	Whole root - Std pH 48H	pH 4.6 for 48 hr		Original data	GEO bulk
125	pif4pif5 mut dark	0.03 >More info	-0.59 >More info	WT dark			Original data	GEO bulk
126	arf6 arf8 stage2	-0.51 >More info	-0.04 >More info	WT stage2			Original data	GEO bulk
127	dcl1-7	-0.54 >More info	-0.00 >More info	Ler			Original data	GEO bulk
128	HSP90 Reduced RNAi-A1	-0.58 >More info	0.04 >More info	HSP90 Reduced Col-0 CS60000		All aerial tissue	Original data	GEO bulk
129	hsfa2 KO	-0.51 >More info	-0.02 >More info	WT (Col-0)		whole seedling	Original data	GEO bulk
130	phyB mutant 22C 4hrs	-0.01 >More info	0.54 >More info	L22-4hrs		whole plant excluding roots	Original data	GEO bulk
131	ABA control	-0.12 >More info	0.63 >More info	No ABA control			Original data	GEO bulk
132	rdr1-1	0.50 >More info	0.00 >More info	Col-0			Original data	GEO bulk
133	IRP1-OE-Ctrl--shoot	-0.52 >More info	0.03 >More info	COL-0-Ctrl--shoot		shoot	Original data
134	myb61 xylem	-0.53 >More info	0.05 >More info	wt xylem		xylem	Original data	GEO bulk
135	Glyphosate EC50	-0.62 >More info	0.14 >More info	Carrier (Glyphosate)			Original data	GEO bulk
136	oxt6 mutant	0.50 >More info	-0.05 >More info	WT			Original data	GEO bulk
137	phyB mutant 16C 4hrs	-0.52 >More info	0.07 >More info	16C 4hs		whole plant excluding roots	Original data	GEO bulk
138	MPK6 ox Root Hypoxia	0.07 >More info	-0.52 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
139	Polysomal RNA 35S:AtCSP1-FH1 cold	-0.07 >More info	0.51 >More info	Polysomal RNA csp1 cold	12h cold (4C)	rosettes	Original data	GEO bulk
140	Full C2 T2	0.62 >More info	-0.21 >More info	C2 C2del and (As)AKiin11 control T2	two days post infusion with Agrobacterium containing full-length SCTV C2	Arabidopsis rosette leaves	Original data
141	bri1-116	-0.32 >More info	0.73 >More info	Col		seedling	Original data	GEO bulk
142	Ibuprofen 3 h	-0.16 >More info	0.55 >More info	Mock 3 h			Original data	Effect of other inhibitors on seedlings
143	root - 04% oxygen - 48h	0.14 >More info	-0.52 >More info	root - 21% oxygen - 48h			Original data	GEO bulk
144	ACN1-2	0.25 >More info	-0.61 >More info	col-7			Original data	GEO bulk
145	rdr6-15	-0.64 >More info	0.30 >More info	Col-0		plant inflorescence	Original data
146	pab nonpolysome	-0.53 >More info	0.21 >More info	WT nonpolysome		seedling shoot/aerial seedling	Original data
147	cpctry	-0.21 >More info	0.52 >More info	Col			Original data	GEO bulk
148	non-polysome mRNA eif3k	-0.57 >More info	0.29 >More info	non-polysome mRNA WT		aerial part	Original data	GEO bulk
149	toc1-1-81hr	-0.60 >More info	0.32 >More info	WT-untreated-81hr	none	seedlings aerial tissue	Original data	GEO bulk