4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on seedling 3h after Gamma WT
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List of experiments correlated with "seedling 3h after Gamma WT"  Help Download transcriptome of top 30
Score Experiment Correlation from
seedling 3h after Gamma WT		 Correlation to
seedling 3h after Gamma WT		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 seedling 3h after Gamma WT 1.00 >More info 1.00 >More info seedling day 1 unirradiated WT 3h Original data
2 seedling 1.5h after Gamma WT 0.91 >More info 0.91 >More info seedling day 1 unirradiated WT 1.5h Original data
3 seedling 6h after Gamma WT 0.95 >More info 0.87 >More info seedling day 1 unirradiated WT 6h Original data
4 seedling 24h after HZE WT 0.88 >More info 0.84 >More info seedling day 2 unirradiated WT 24h Original data
5 seedling 6h after HZE WT 0.92 >More info 0.70 >More info seedling day 1 unirradiated WT 6h Original data
6 atm3 -0.77 >More info -0.83 >More info Col0 whole plant Original data GEO bulk
7 irradiated leaf (WT 1d) 0.81 >More info 0.73 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
8 seedling 12h after HZE WT 0.92 >More info 0.62 >More info seedling day 1 unirradiated WT 12h Original data
9 irradiated leaf (cmt 1d) 0.78 >More info 0.72 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
10 seedling 24h after HZE atm-1 0.81 >More info 0.64 >More info seedling day 2 unirradiated atm-1 24h Original data
11 seedling 6h after Gamma atm-1 0.83 >More info 0.62 >More info seedling day 1 unirradiated atm-1 6h Original data
12 Genotoxic Stress 3 h (root) 0.85 >More info 0.58 >More info Stress mock 3 h (root) Original data Stress treatments
13 seedling 12h after Gamma WT 0.88 >More info 0.52 >More info seedling day 1 unirradiated WT 12h Original data
14 Genotoxic Stress 3 h (shoot) 0.53 >More info 0.81 >More info Stress mock 3 h (shoot) Original data Stress treatments
15 seedling 1.5h after HZE WT 0.85 >More info 0.48 >More info seedling day 1 unirradiated WT 1.5h Original data
16 BLM+INA 0.80 >More info 0.53 >More info CK BLM and INA seedling Original data
17 seedling 1.5h after Gamma atm-1 0.68 >More info 0.62 >More info seedling day 1 unirradiated atm-1 1.5h Original data
18 seedling 24h after Gamma WT 0.71 >More info 0.56 >More info seedling day 2 unirradiated WT 24h Original data
19 Triazolopyrimidine EC50 0.70 >More info 0.56 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
20 seedling 6h after HZE atm-1 0.76 >More info 0.47 >More info seedling day 1 unirradiated atm-1 6h Original data
21 Primisulfuron EC50 0.69 >More info 0.53 >More info Carrier (primisulfuron) Original data GEO bulk
22 BLM 0.79 >More info 0.43 >More info CK BLM seedling Original data
23 seedling 24h after Gamma atm-1 0.65 >More info 0.56 >More info seedling day 2 unirradiated atm-1 24h Original data
24 csn5 (csn5a-2 csn5b) light 0.73 >More info 0.45 >More info WT light Original data GEO bulk
25 Imidazolinone EC50 0.71 >More info 0.44 >More info Carrier (Imidazolinone) Original data GEO bulk
26 csn3-1 light 0.72 >More info 0.43 >More info WT light Original data GEO bulk
27 Sulfometuron EC50 0.66 >More info 0.49 >More info Carrier Original data GEO bulk
28 seedlings +5AC 0.78 >More info 0.36 >More info control seedlings 10-day old whole seedling Original data GEO bulk
29 TNT-seedlings 0.57 >More info 0.57 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
30 cdpk6-yfp 0.61 >More info 0.52 >More info Kan seedlings Original data GEO bulk
31 pil5 red light 0.61 >More info 0.50 >More info Col-0 red light Original data GEO bulk
32 seedling 12h after Gamma atm-1 0.72 >More info 0.39 >More info seedling day 1 unirradiated atm-1 12h Original data
33 E2Fa-Dpa 0.69 >More info 0.39 >More info WT Original data GEO bulk
34 (Ws-2)+100 uM As 0.59 >More info 0.49 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
35 OE WRKY63.3 high light 0.60 >More info 0.48 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
36 WT chitooctaose 0.48 >More info 0.58 >More info WT water Original data GEO bulk
37 sicy-192 cotyledons 0.65 >More info 0.40 >More info WT cotyledons cotyledons Original data
38 root Dosed gold 0.50 >More info 0.55 >More info root No gold .125 mM gold 24 h roots Original data
39 Tsu -Fe 24h Roots 0.62 >More info 0.43 >More info Tsu +Fe 24h Roots Original data GEO bulk
40 R. solani AG8 0.60 >More info 0.45 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
41 0.125 mM gold 24 h 0.50 >More info 0.55 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
42 Tsu-1 -Fe 24h 0.62 >More info 0.43 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
43 Transgenic LEC2GR Seedling 1h Dex 0.41 >More info 0.63 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
44 WT in -N 0.62 >More info 0.41 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
45 Phytoprostane A1 4 h 0.52 >More info 0.50 >More info Col-0 Original data GEO bulk
46 AgNO3 3 h 0.37 >More info 0.65 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
47 SA 0.48 >More info 0.54 >More info WT mock Whole seedling Original data GEO bulk
48 WT mitomycin C 0.68 >More info 0.33 >More info WT mock shoot apical meristem Original data
49 amiR-tor induced 3d 0.43 >More info 0.58 >More info amiR-tor 3d C 3 days estradiol-treated seedlings Original data GEO bulk
50 Selenate (shoot) 0.63 >More info 0.37 >More info Ws (shoot) Original data GEO bulk
51 aox1a:rpoTmp untreated 0.62 >More info 0.38 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
52 UV 0.63 >More info 0.37 >More info WT aerial region Original data GEO bulk
53 Shoot Selenate 0.63 >More info 0.37 >More info Shoot control 40 micromolar selenate Shoot Original data GEO bulk
54 Root -Cs 0.49 >More info 0.51 >More info Control-root Original data GEO bulk
55 Mutant cry1 (High Light) -0.52 >More info -0.47 >More info Col-0 (High Light) Original data GEO bulk
56 LTN008-2 aza-dc 0.64 >More info 0.35 >More info LTN012-2 Mock Original data
57 cry1 high light -0.52 >More info -0.47 >More info Col-O high light Original data GEO bulk
58 whole roots -Fe 72 hour 0.63 >More info 0.35 >More info whole roots standard Original data GEO bulk
59 sni1 0.60 >More info 0.38 >More info WT Original data GEO bulk
60 Fe starvation 72 h 0.63 >More info 0.35 >More info Control Original data GEO bulk
61 bZIP1ko mutant N+Light- 0.51 >More info 0.47 >More info WT-sib N+Light- whole plant Original data GEO bulk
62 upf1 0.59 >More info 0.38 >More info WT whole plant Original data GEO bulk
63 (Col-0)+200 uM As 0.62 >More info 0.35 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
64 Dark 4 h pls UV-AB 5min 0.61 >More info 0.36 >More info Dark 4 h Original data Light treatments
65 +1.6 mM Tween 20 1 h. 0.35 >More info 0.62 >More info +distilled water 1 h. Original data GEO bulk
66 plant (tga2-5-6) 4h phytoprostane A1 0.56 >More info 0.40 >More info plant (tga2-5-6) 4h control Original data GEO bulk
67 coi1-2 0.40 >More info 0.56 >More info Col-0 mock Whole seedling Original data GEO bulk
68 TaFLS overexpression line (OE2) -0.51 >More info -0.45 >More info Col-0 Rosette leaves Original data
69 apum23 0.57 >More info 0.39 >More info WT (Col-3) aerial parts Original data GEO bulk
70 Cocultivation 8 hrs root 0.54 >More info 0.42 >More info Mock cocultivation 8 hrs root Root Original data
71 mkk2 control rep -0.45 >More info -0.51 >More info Col-0 Time 0 rep Original data GEO bulk
72 pepr1-1 Pepr2-3 +Pep2 2h -0.42 >More info -0.54 >More info WT +Pep2 2h Pep2 Original data GEO bulk
73 ppi2 0.56 >More info 0.39 >More info WT whole plant Original data GEO bulk
74 5-Triiodobenzoic acid3 h 0.29 >More info 0.66 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
75 Col0-PsmES4326-24hpi 0.34 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
76 35S:VND7-VP16-GR+CHX 0.45 >More info 0.50 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
77 bri1-116 0.22 >More info 0.73 >More info Col seedling Original data GEO bulk
78 Kas -Fe 48h Shoots 0.67 >More info 0.27 >More info Kas +Fe 24h Shoots Original data GEO bulk
79 AtLysM RLK1 mutant water 0.57 >More info 0.37 >More info WT water Original data GEO bulk
80 csn3-1 dark 0.60 >More info 0.34 >More info WT dark Original data GEO bulk
81 bak1-3 +Pep2 10h 0.44 >More info 0.50 >More info WT +Pep2 10h Pep2 Original data GEO bulk
82 cell culture 4 h phytoprostane A1 0.55 >More info 0.38 >More info cell culture 4 h control Original data GEO bulk
83 UV Stress 24 h (shoot) 0.59 >More info 0.34 >More info Stress mock 24 h (shoot) Original data Stress treatments
84 Cycloheximide 3 h 0.42 >More info 0.51 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
85 ckh1 CK200 0.41 >More info 0.52 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
86 8-DAC chr11-1chr17-1 0.55 >More info 0.37 >More info 8-DAC Col-0 leaf explants Original data
87 GO5; 8h switch to ambient CO2 concentrations; 0.36 >More info 0.56 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
88 R. solani AG2-1 0.55 >More info 0.36 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
89 WT (Ler) TSA 0.56 >More info 0.35 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and 100 ng/ml TSA. tissue culture Original data GEO bulk
90 seedling 3h after HZE WT 0.89 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
91 Col-0 norflurazon 0.62 >More info 0.29 >More info Col-0 control Original data GEO bulk
92 pil5 dark 0.67 >More info 0.23 >More info Col-0 dark Original data GEO bulk
93 WT H2O2 3h 0.54 >More info 0.36 >More info WT water 3h 3h_H2O2 Original data GEO bulk
94 (Col-0)+100 uM As 0.51 >More info 0.39 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
95 nas4x leaves - Fe -0.52 >More info -0.38 >More info WT leaves - Fe Leaves Original data GEO bulk
96 sicy-192 gun1-101 cotyledons 0.58 >More info 0.32 >More info WT cotyledons cotyledons Original data
97 ABA SA 24h 0.31 >More info 0.59 >More info EtOH 24h 24hr Original data GEO bulk
98 hira-root -0.55 >More info -0.34 >More info WT-root root Original data
99 Laer pretreat GA Flg22 1h 0.18 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
100 whole roots -Fe 48 hour 0.56 >More info 0.32 >More info whole roots standard Original data GEO bulk
101 upf3 0.50 >More info 0.38 >More info WT whole plant Original data GEO bulk
102 Whole root - S 3H 0.30 >More info 0.58 >More info Whole root - S 0H Original data GEO bulk
103 WT seedlings MV 0.60 >More info 0.27 >More info WT seedlings control Seedlings Original data GEO bulk
104 miR 0h 0.33 >More info 0.53 >More info Col 0h Leaf Original data GEO bulk
105 sid2 -0.33 >More info -0.53 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
106 csn4-1 dark 0.64 >More info 0.22 >More info WT light Original data GEO bulk
107 msh1 recA3 untreated 0.51 >More info 0.35 >More info WT untreated above-ground parts Original data GEO bulk
108 35S::PI ap3-3 35S::AP-GR +DEX 0.36 >More info 0.50 >More info 0hr DEX Original data GEO bulk
109 pnp1-1 3h +P 0.54 >More info 0.31 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
110 nia1nia2 0.53 >More info 0.32 >More info Col-0 whole seedlings Original data GEO bulk
111 seedling 12h after HZE atm-1 0.67 >More info 0.17 >More info seedling day 1 unirradiated atm-1 12h Original data
112 L2.4 mutant 0.68 >More info 0.16 >More info Wt Original data GEO bulk
113 dicamba 0.50 >More info 0.34 >More info WT mock whole seedling Original data GEO bulk
114 SCR-GR Time 1H Dex 0.33 >More info 0.51 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
115 csn4-1 mutant 0.50 >More info 0.33 >More info WT dark Original data GEO bulk
116 D2O 0.53 >More info 0.30 >More info H2O seedling Original data GEO bulk
117 csn5 (csn5a-2 csn5b) dark 0.50 >More info 0.32 >More info WT dark Original data GEO bulk
118 Cor 24h 0.32 >More info 0.50 >More info Mock 24h Cor Original data GEO bulk
119 ice1 6H Cold 0.57 >More info 0.25 >More info WT 6H Cold Original data GEO bulk
120 prors1-2 leaves 0.59 >More info 0.23 >More info Col-0 leaves leaves Original data
121 Total RNA 35S:HF-RPL18 0.25 >More info 0.57 >More info Total RNA csp1 12h non-stress rosettes Original data GEO bulk
122 smg5-2 0.51 >More info 0.30 >More info WT whole plant Original data GEO bulk
123 17 0h total -0.50 >More info -0.31 >More info 27 0h total whole seedlings floating on MS medium Original data
124 pnp1-1 1wk +P 0.56 >More info 0.25 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
125 30m light 0.20 >More info 0.61 >More info before light whole seedlings Original data GEO bulk
126 24h volatiles Sm. R3089 -0.21 >More info -0.60 >More info 24h untreated whole seedling Original data GEO bulk
127 35S:RPS4 eds1-2 2h -0.21 >More info -0.60 >More info 35S:RPS4 2h leaves Original data
128 root cells columella root cap -Fe 0.56 >More info 0.24 >More info whole roots standard Original data GEO bulk
129 rcf1-1 cold 0h 0.55 >More info 0.25 >More info WT cold 0h Control seedlings Original data GEO bulk
130 B.cinerea 18 h infection 0.25 >More info 0.55 >More info Mock 18 h Original data Botrytis cinerea infection
131 Botrytis cinerea 18h 0.25 >More info 0.55 >More info control 18h Original data GEO bulk
132 24h light (+Lincomycin) 0.61 >More info 0.18 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
133 shoots bhlh100/101 0uM Fe 0.56 >More info 0.22 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
134 Heat no recovery 0.60 >More info 0.18 >More info Mock no recovery seedling Original data GEO bulk
135 MG132 3 h 0.25 >More info 0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
136 short 12-degree- 0.19 >More info 0.59 >More info control short Original data GEO bulk
137 FAMA induced 48h 0.52 >More info 0.25 >More info control 48h Whole seedling Original data GEO bulk
138 ice1 control 0.57 >More info 0.20 >More info WT control Original data GEO bulk
139 35S:LOB-GR mock 0.57 >More info 0.20 >More info Col mock mock seedling Original data GEO bulk
140 60m light 0.12 >More info 0.65 >More info before light whole seedlings Original data GEO bulk
141 psad1-1 stn7-1 -0.52 >More info -0.24 >More info Col-0 rosette leaves Original data GEO bulk
142 amiR-tor induced 6d 0.54 >More info 0.22 >More info amiR-tor 6d C 6 days estradiol-treated seedlings Original data GEO bulk
143 oas-a1.1 Cd 18h 0.26 >More info 0.50 >More info Cd 18h root Root Original data GEO bulk
144 Col BTH 0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
145 Norflurazon 0.57 >More info 0.18 >More info Col-0 Original data GEO bulk
146 17 2h total -0.59 >More info -0.16 >More info 27 1h total 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
147 Kas -Fe 24h Shoots 0.50 >More info 0.25 >More info Kas +Fe 24h Shoots Original data GEO bulk
148 Norflurazon 0.57 >More info 0.18 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
149 root BA 12h 0.57 >More info 0.17 >More info root control 12h boron (5mM) root Original data GEO bulk
150 Leafminer damaged seedlings 0.18 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
151 COL-0-Fe--root 0.53 >More info 0.20 >More info COL-0-Ctrl--root root Original data
152 Tsu -Fe 24h Shoots 0.53 >More info 0.20 >More info Tsu +Fe 24h Shoots Original data GEO bulk
153 tfl1-1-16ºC 0.23 >More info 0.50 >More info WT-16ºC Original data GEO bulk
154 PNO8 3 h 0.20 >More info 0.52 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
155 WT 3h -P 0.01 >More info 0.71 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
156 oas-a1.1 root 0.22 >More info 0.50 >More info WT-Untreated Root Original data GEO bulk
157 pnp1-1 3h -P 0.55 >More info 0.16 >More info WT 3h -P No phosphate medium seedlings without roots Original data GEO bulk
158 COL-0-Fe--shoot 0.52 >More info 0.19 >More info COL-0-Ctrl--shoot shoot Original data
159 oligomycin 1 h 0.19 >More info 0.52 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
160 A. halleri highZn-leaf -0.07 >More info -0.61 >More info A. petraea highZn-leaf Original data GEO bulk
161 irradiated leaf (cmt 5d) 0.52 >More info 0.15 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
162 protoplasted roots pH4.6 0.53 >More info 0.14 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
163 inhibitor B Treated 0.14 >More info 0.53 >More info Negative Control Original data GEO bulk
164 17 2h unlabelled -0.51 >More info -0.15 >More info 27 1h unlabelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
165 ADD3 -0.54 >More info -0.12 >More info WT aerial part Original data GEO bulk
166 seed germinating in countinuous light 24h SL -0.02 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
167 Col ozone 3h 0.15 >More info 0.50 >More info Col clean-air 3h ozone Original data GEO bulk
168 gun1-9 norflurazon 0.50 >More info 0.14 >More info gun1-9 control Original data GEO bulk
169 17 2h labelled -0.53 >More info -0.11 >More info 27 1h labelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
170 eto1-4 +393 -0.50 >More info -0.12 >More info eto1-4 whole seedling Original data GEO bulk
171 myb3 myb3r4d 0.10 >More info 0.52 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
172 npr1-3 DCA 48h 0.01 >More info 0.60 >More info npr1-3 MOCK 48h Original data GEO bulk
173 Day Time Treatment 0.10 >More info 0.51 >More info Day Time Control 1hr white light pulse aerial rosette Original data
174 CeO2 germinant -0.11 >More info -0.50 >More info Millipore Water germinant CeO2 seedling Original data
175 chito-tetramer 0.09 >More info 0.51 >More info Col Mock Original data GEO bulk
176 long 17-degree- -0.02 >More info 0.61 >More info control long Original data GEO bulk
177 penta mutant (higher order mutant) -0.07 >More info -0.51 >More info col control (higher order mutant) Original data GEO bulk
178 CCA1-ox 6am non-polysomal 0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
179 leaf chr11-1chr17-1 0.51 >More info 0.06 >More info leaf Col-0 leaves Original data GEO bulk
180 phyB mutant 22C 4hrs -0.01 >More info -0.55 >More info L22-4hrs whole plant excluding roots Original data GEO bulk
181 IAA/inhibitor B Treated 0.02 >More info 0.53 >More info IAA Treated Original data GEO bulk
182 Shoot -Cs 0.02 >More info 0.53 >More info Control-shoot Original data GEO bulk
183 atmyc2 cop1 Seedling BL 0.54 >More info -0.01 >More info WT Seedling BL Original data GEO bulk
184 IAA7mII over-expressor IAA Treated -0.17 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
185 6h volatiles Sm. R3089 0.07 >More info -0.54 >More info 6h untreated whole seedling Original data GEO bulk
186 Shoot apex inflorescence (after bolting) -0.20 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
187 NaCl cpctry -0.05 >More info 0.50 >More info NaCl Col Original data GEO bulk
188 Infected pft1 leaf -0.13 >More info 0.54 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
189 siliques AtHb1 control -0.11 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
190 endosperm paclobutrazol 0.51 >More info -0.12 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
191 E.orontii Infection 6 h -0.13 >More info 0.52 >More info Uninfection 6 h Original data Elicitor treatments
192 M6PR transgenic leaf 100mM NaCl 0.20 >More info -0.56 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
193 Heat shock optimum -0.36 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
194 xyl-grown cell culture- 1h 1mM Glc 0.26 >More info -0.50 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data