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List of experiments correlated with "Dark"

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Score	Experiment	Correlation from Dark	Correlation to Dark	Control Experiment	Genotype	Treatment	Tissue	Link to original data	Experimental Category	Data set Details
1	Dark	1.00 >More info	1.00 >More info	Control				Original data	GEO bulk
2	dorn1-1 Root 100 mM ATP 30 min	0.64 >More info	0.48 >More info	Col-0 Root 100 mM ATP 30 min			Roots of 5 day-old seedlings	Original data
3	pepr1-1 Pepr2-3 untreated	0.44 >More info	0.65 >More info	WT untreated		untreated		Original data	GEO bulk
4	35S::MBF1c	-0.60 >More info	-0.47 >More info	control				Original data	GEO bulk
5	npr1 sni1 ssn2 SA	0.69 >More info	0.37 >More info	npr1 sni1 SA		salicylic acid	seedling	Original data	GEO bulk
6	IXB induced	-0.59 >More info	-0.43 >More info	Methanol IXB			Suspension cells	Original data	GEO bulk
7	cys-c1 leaf	-0.73 >More info	-0.25 >More info	Leaf-WT			leaves	Original data	GEO bulk
8	Differentiation 12h	0.54 >More info	0.40 >More info	Differentiation 0h			leaves	Original data
9	root - 04% oxygen - 2h	0.17 >More info	0.77 >More info	root - 21% oxygen - 2h				Original data	GEO bulk
10	P.p 2.5hai	-0.64 >More info	-0.29 >More info	At-Control			roots	Original data	GEO bulk
11	A2hsfa1-ox in quadruple mutant	0.58 >More info	0.34 >More info	hsfa1 quadruple mutant			whole seedling	Original data	GEO bulk
12	IAA Treated	0.61 >More info	0.31 >More info	Negative Control				Original data	GEO bulk
13	Differentiation 24h	0.55 >More info	0.36 >More info	Differentiation 0h			leaves	Original data
14	eif3h polysome	0.61 >More info	0.30 >More info	WT polysome				Original data	GEO bulk
15	Whole root - low pH 48H	0.32 >More info	0.59 >More info	Whole root - Std pH 48H		pH 4.6 for 48 hr		Original data	GEO bulk
16	flu dark 8hours/30 minute light	-0.52 >More info	-0.36 >More info	col dark 8hours/30 minute light				Original data	GEO bulk
17	hsfa2 KO	0.66 >More info	0.21 >More info	WT (Col-0)			whole seedling	Original data	GEO bulk
18	Laer Flg22(Agrobacterium) 2h	0.61 >More info	0.26 >More info	Laer Control			leaf discs	Original data	GEO bulk
19	2xX4x interploidy cross	0.59 >More info	0.28 >More info	2xX2x cross				Original data	GEO bulk
20	20h Col-0	0.65 >More info	0.21 >More info	00h Col-0				Original data	GEO bulk
21	root hypoxia pPEP	-0.54 >More info	-0.31 >More info	root hypoxia total		hypoxia	root	Original data	GEO bulk
22	Col-0 Root 100 mM ATP 30 min	-0.50 >More info	-0.35 >More info	Col-0 Root MES buffer 30 min			Roots of 5 day-old seedlings	Original data
23	vtc2 day 7 induction	0.61 >More info	0.22 >More info	WT day 7 induction			day 7 induction of somatic embryogenesis	Original data	GEO bulk
24	Nuclear GSH3	0.56 >More info	0.25 >More info	Cytoplasmic GSH3		Media change		Original data	GEO bulk
25	Cs root	-0.61 >More info	-0.20 >More info	control root				Original data	GEO bulk
26	Heat shock optimum	0.16 >More info	0.65 >More info	Heat shock baseline		Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
27	rdr6-15	0.70 >More info	0.11 >More info	Col-0				Original data	GEO bulk
28	bri1-116	0.08 >More info	0.73 >More info	Col			seedling	Original data	GEO bulk
29	Col-0 SA	0.56 >More info	0.24 >More info	Col-0 water			complete seedling	Original data
30	16h Col-0	0.52 >More info	0.28 >More info	00h Col-0				Original data	GEO bulk
31	root - 08% oxygen - 30min	0.22 >More info	0.57 >More info	root - 21% oxygen - 30min				Original data	GEO bulk
32	Atss3 Dark4	0.50 >More info	0.28 >More info	Atss3 Dark0.5				Original data	GEO bulk
33	root - 08% oxygen - 48h	0.28 >More info	0.50 >More info	root - 21% oxygen - 48h				Original data	GEO bulk
34	bam8 untreated	0.50 >More info	0.27 >More info	WT untreated		none	shoot	Original data
35	root callus inducing medium 96 h	0.59 >More info	0.18 >More info	root callus inducing medium 0 h		96 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
36	DMTU	0.58 >More info	0.18 >More info	control				Original data	GEO bulk
37	Laer pretreat GA Flg22 1h	0.05 >More info	0.71 >More info	Laer pretreat water control			leaf discs	Original data	GEO bulk
38	Kas-1 -Fe 48h	0.50 >More info	0.25 >More info	Kas-1 +Fe 24h			roots	Original data	GEO bulk
39	Kas -Fe 48h Roots	0.50 >More info	0.25 >More info	Kas +Fe 24h Roots				Original data	GEO bulk
40	PNO8 12 h	-0.20 >More info	-0.55 >More info	Mock 12 h				Original data	Effect of other inhibitors on seedlings
41	35S::KLU	0.54 >More info	0.20 >More info	WT			Shoot	Original data
42	Salt Stress 24 h (root)	-0.59 >More info	-0.14 >More info	Stress mock 24 h (root)				Original data	Stress treatments
43	oas-a1.1 root	0.23 >More info	0.50 >More info	WT-Untreated			Root	Original data	GEO bulk
44	WT Shoot Hypoxia	0.09 >More info	0.64 >More info	WT Shoot Normoxia (mock)		Hypoxia	Shoot	Original data	GEO bulk
45	Drought Stress 24 h (root)	0.16 >More info	0.55 >More info	Stress mock 24 h (root)				Original data	Stress treatments
46	ahg2-1abi1-1	0.50 >More info	0.21 >More info	WT (Col) control				Original data	GEO bulk
47	whole roots 140 mM NaCl 1 hour	-0.55 >More info	-0.15 >More info	whole roots standard				Original data	GEO bulk
48	AFB1 PSTDC3000 24h	-0.52 >More info	-0.18 >More info	Col PSTDC3000 24h			Leaf	Original data	GEO bulk
49	Col0-PsmES4326-24hpi	0.09 >More info	0.61 >More info	Col0-mock-24hpi			leaf	Original data	GEO bulk
50	line J1551-5 days control + 2 days salt s	0.52 >More info	0.17 >More info	line J1551-7 days-control				Original data
51	cs26 short-day	0.53 >More info	0.16 >More info	Leaves-WT-SD			leaf	Original data	GEO bulk
52	08h Col-0	0.53 >More info	0.16 >More info	00h Col-0				Original data	GEO bulk
53	large flower buds J10A	0.51 >More info	0.18 >More info	large flower buds J03A			large flower buds	Original data	GEO bulk
54	rrd2 IBA	-0.53 >More info	-0.15 >More info	wild type IBA		12h 0.5 mg/L IBA	cultured explant	Original data	GEO bulk
55	Shoot apex inflorescence (after bolting)	0.03 >More info	0.65 >More info	Control for tissue data				Original data	Developmental series; organs / tissues at different ages
56	GiantCell Root	0.57 >More info	0.11 >More info	Control Root			laser captured giant cells	Original data	GEO bulk
57	root - 04% oxygen - 30min	0.11 >More info	0.57 >More info	root - 21% oxygen - 30min				Original data	GEO bulk
58	35S:LOB-GR DEX	0.62 >More info	0.05 >More info	Col DEX		dexamethasone	seedling	Original data	GEO bulk
59	4C 1h	-0.50 >More info	-0.17 >More info	22C 1h				Original data	GEO bulk
60	MPK6 ox Shoot Hypoxia	0.11 >More info	0.55 >More info	WT Shoot Normoxia (mock)		Hypoxia	Shoot	Original data	GEO bulk
61	root endodermis -S	0.52 >More info	0.12 >More info	root endodermis and quiescent center pH5.7				Original data	GEO bulk
62	8-DAC chr11-1chr17-1	-0.53 >More info	-0.11 >More info	8-DAC Col-0			leaf explants	Original data
63	Mutant lfy-12(shoot apex)	-0.53 >More info	-0.11 >More info	Shoot apex inflorescence (after bolting)				Original data	Developmental series; organs / tissues at different ages
64	root control pWOL	0.55 >More info	0.08 >More info	root control total		control	root	Original data	GEO bulk
65	edr1 36 h powdery mildew	-0.52 >More info	-0.11 >More info	Col-0 36 h powdery mildew				Original data	GEO bulk
66	cov1 cov2 stem Base	-0.50 >More info	-0.12 >More info	WT stem Base			stem Base	Original data	GEO bulk
67	downy mildew cotyledons late stage	-0.58 >More info	-0.04 >More info	mock inoculated			Cotyledons	Original data	GEO bulk
68	Col BTH	-0.06 >More info	0.67 >More info	Col			rosettes	Original data	GEO bulk
69	4C 0h	-0.51 >More info	-0.10 >More info	22C 0h				Original data	GEO bulk
70	IRP1-OE-Fe--root	-0.50 >More info	-0.11 >More info	COL-0-Fe--root			root	Original data
71	Brz220 3 h	0.53 >More info	0.07 >More info	Mock 3 h				Original data	Effect of brassinosteroid inhibitors on seedlings
72	root longitudinal zone-2 pH 4.6	-0.50 >More info	-0.10 >More info	root longitudinal zone-2 pH 5.7				Original data	GEO bulk
73	T8 leaf-drought	0.50 >More info	0.10 >More info	T8 leaf-well watered				Original data	GEO bulk
74	root control pGL2	0.52 >More info	0.07 >More info	root control total		control	root	Original data	GEO bulk
75	HARAP aerobic	0.05 >More info	0.54 >More info	WT aerobic		aerobic		Original data	GEO bulk
76	CCA1-ox 6am non-polysomal	0.08 >More info	0.51 >More info	WT 6am non-polysomal			aerial part	Original data
77	ulp1c ulp1d	-0.51 >More info	-0.07 >More info	col				Original data	GEO bulk
78	root - 01% oxygen - 30min	0.04 >More info	0.54 >More info	root - 21% oxygen - 30min				Original data	GEO bulk
79	WT Root-Pi	-0.60 >More info	0.02 >More info	WT Root+Pi			roots	Original data	GEO bulk
80	root - 08% oxygen - 2h	-0.08 >More info	0.65 >More info	root - 21% oxygen - 2h				Original data	GEO bulk
81	shoot hypoxia total	-0.00 >More info	0.56 >More info	shoot control total				Original data	GEO bulk
82	siliques AtHb1 control	0.04 >More info	0.52 >More info	siliques WT control		control	silique	Original data	GEO bulk
83	seed germinating in countinuous light 24h SL	-0.11 >More info	0.67 >More info	Control for tissue data			seed	Original data	GEO bulk
84	pGL1::GL1-GR Dex 4 hours	0.55 >More info	0.00 >More info	pGL1::GL1-GR mock 4 hours				Original data	GEO bulk
85	Col-0 V. longisporum-inoculated 48 hpi	-0.57 >More info	0.02 >More info	Col-0 mock 48 hpi			Pool of >50 individual roots	Original data
86	IAA7mII over-expressor IAA Treated	-0.14 >More info	0.69 >More info	empty vector IAA Treated				Original data	GEO bulk
87	sid2	0.50 >More info	0.04 >More info	Col			rosettes	Original data	GEO bulk
88	arr-BA-sample	-0.50 >More info	-0.04 >More info	Wt-BA-sample			seedling	Original data
89	whole roots 140 mM NaCl 32 hour	-0.50 >More info	-0.04 >More info	whole roots standard				Original data	GEO bulk
90	short 17-degree-	-0.00 >More info	0.53 >More info	control short				Original data	GEO bulk
91	2xX6x interploidy cross	0.50 >More info	-0.00 >More info	2xX2x cross				Original data	GEO bulk
92	root - 01% oxygen - 2h	-0.10 >More info	0.60 >More info	root - 21% oxygen - 2h				Original data	GEO bulk
93	Hypoxic prt6	0.53 >More info	-0.04 >More info	Hypoxic Col-0		hypoxic conditions	seedlings	Original data	GEO bulk
94	CAX1/CAX3 mutant	-0.50 >More info	0.01 >More info	Col			whole plant	Original data	GEO bulk
95	ddm1 F6 inflorescence	-0.50 >More info	0.04 >More info	wt Col inflorescence			unopened flower buds	Original data
96	Propiconazole 3 h	0.57 >More info	-0.11 >More info	Mock 3 h				Original data	Effect of GA inhibitors on seedlings
97	edm2-2 untreated	-0.05 >More info	0.50 >More info	Col-0 untreated			seedlings	Original data	GEO bulk
98	Leafminer damaged seedlings	-0.13 >More info	0.56 >More info	Healthy seedlings			leaves	Original data	GEO bulk
99	AsAKiin11 T3	0.52 >More info	-0.10 >More info	C2 C2del and (As)AKiin11 control T3		three days post infusion with Agrobacterium containing antisense (As)AKiin11	Arabidopsis rosette leaves	Original data
100	0.5h pollen tube	0.57 >More info	-0.16 >More info	drypollen			in vitro-grown pollen tubes	Original data	GEO bulk
101	whole roots 140 mM NaCl 4 hour	-0.52 >More info	0.14 >More info	whole roots standard				Original data	GEO bulk
102	kyp protoplast	-0.50 >More info	0.16 >More info	Ler protoplast			protoplast	Original data	GEO bulk
103	SA 24h	0.55 >More info	-0.28 >More info	EtOH 24h		24hr		Original data	GEO bulk
104	AsAKiin11 T1	0.58 >More info	-0.37 >More info	C2 C2del and (As)AKiin11 control T1		one day post infusion with Agrobacterium containing antisense (As)AKiin11	Arabidopsis rosette leaves	Original data