4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Dark 3day hml
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List of experiments correlated with "Dark 3day hml"  Help Download transcriptome of top 30
Score Experiment Correlation from
Dark 3day hml		 Correlation to
Dark 3day hml		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Dark 3day hml 1.00 >More info 1.00 >More info 0h hml Original data
2 Dark 3day wt 0.92 >More info 0.93 >More info 0h wt Original data
3 Dark 2day hml 0.91 >More info 0.92 >More info 0h hml Original data
4 Dark 2day wt 0.89 >More info 0.91 >More info 0h wt Original data
5 Dark 1day hml 0.87 >More info 0.89 >More info 0h hml Original data
6 Dark 1day wt 0.86 >More info 0.87 >More info 0h wt Original data
7 Dark 1day ivd 0.84 >More info 0.87 >More info 0h ivd Original data
8 Dark 3day ivd 0.86 >More info 0.84 >More info 0h ivd Original data
9 Dark 6h wt 0.82 >More info 0.86 >More info 0h wt Original data
10 Dark 6h hml 0.82 >More info 0.85 >More info 0h hml Original data
11 Dark 6h ivd 0.80 >More info 0.85 >More info 0h ivd Original data
12 Shoot dark control 24h 0.67 >More info 0.82 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
13 Shoot dark control 7h 0.67 >More info 0.81 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
14 Shoot submergence 24h 0.66 >More info 0.78 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
15 seedling 1.5h after HZE atm-1 0.61 >More info 0.76 >More info seedling day 1 unirradiated atm-1 1.5h Original data
16 4d red light grown hmr-5 seedlings 0.61 >More info 0.71 >More info 4d red light grown WT(Col-0) seedlings Original data
17 Col-0 C2H4 24h 0.61 >More info 0.69 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
18 dor drought 0.45 >More info 0.83 >More info WT drought Original data GEO bulk
19 T6 leaf-drought 0.51 >More info 0.76 >More info T6 leaf-well watered Original data GEO bulk
20 seedling 1.5h after HZE WT 0.60 >More info 0.65 >More info seedling day 1 unirradiated WT 1.5h Original data
21 detached inflorescences 24h 0.58 >More info 0.67 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
22 WT hypoxia 0.57 >More info 0.67 >More info WT normoxia whole rosette Original data
23 low CO2 + dark 0.57 >More info 0.67 >More info normal CO2 + light Original data GEO bulk
24 WT Red light 18h -0.54 >More info -0.69 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
25 rosettes myoox drought 0.57 >More info 0.66 >More info rosettes myoox watered Original data GEO bulk
26 Osmotic Stress 24 h (shoot) 0.54 >More info 0.67 >More info Stress mock 24 h (shoot) Original data Stress treatments
27 aerial organ callus inducing medium 48 h 0.55 >More info 0.65 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
28 ced1 -0.55 >More info -0.65 >More info WT PEG 6hr seedlings Original data GEO bulk
29 Col-0 under 4 days salt 0.60 >More info 0.60 >More info Col-0 under control 4 days salt treatment rosette Original data
30 Pseudomonas 0.47 >More info 0.73 >More info Control pseudomonas treated whole seedling Original data GEO bulk
31 aerial organ callus inducing medium 12 h 0.55 >More info 0.64 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
32 aox1a(line) MLD stressed 0.50 >More info 0.68 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
33 Dark 4 h pls RedLight 1min -0.47 >More info -0.71 >More info Dark 4 h Original data Light treatments
34 WT (Col-0) inflorescence drought day 5 0.54 >More info 0.63 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
35 T8 leaf-drought 0.49 >More info 0.68 >More info T8 leaf-well watered Original data GEO bulk
36 rosettes WT drought 0.56 >More info 0.60 >More info rosettes WT watered Original data GEO bulk
37 aerial organ callus inducing medium 96 h 0.50 >More info 0.66 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
38 WT (Col) glucose -0.49 >More info -0.67 >More info WT (Col) glucose seedlings Original data GEO bulk
39 hai1-2 low water potential 0.51 >More info 0.63 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
40 C2 leaf-drought 0.53 >More info 0.60 >More info C2 leaf-well watered Original data GEO bulk
41 WT leaf-drought 0.50 >More info 0.62 >More info WT leaf-well watered Original data GEO bulk
42 sex1-3 0.31 >More info 0.81 >More info Col-WT leaves Original data GEO bulk
43 WT (Col-0) inflorescence drought day 10 0.53 >More info 0.57 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
44 sfr6 control -0.53 >More info -0.57 >More info WT control All aerial tissue Original data GEO bulk
45 Light 3day hml 0.22 >More info 0.88 >More info 0h hml Original data
46 24h light (+Lincomycin) 0.48 >More info 0.62 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
47 Nicotinamide-93hr 0.54 >More info 0.55 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
48 aerial organ callus inducing medium 24h 0.53 >More info 0.56 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
49 NahG 0.45 >More info 0.64 >More info Col-0 Leaves Original data GEO bulk
50 Leafminer locally damaged thaliana seedlings 0.52 >More info 0.57 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
51 pif4pif5 mut 1h FR -0.48 >More info -0.61 >More info WT 1h FR Original data GEO bulk
52 Root dark control 24h 0.49 >More info 0.60 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
53 Leafminer damaged seedlings 0.52 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
54 WT light -0.51 >More info -0.57 >More info WT dark Original data GEO bulk
55 Root submergence 24h 0.48 >More info 0.60 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
56 1 h Light Total RNA -0.49 >More info -0.59 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
57 rosettes drought 0.51 >More info 0.56 >More info rosettes watered Original data GEO bulk
58 Col0-PsmES4326-24hpi 0.46 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
59 ptpks2 -0.43 >More info -0.64 >More info Col-WT leaves Original data GEO bulk
60 max3GR24 (1 uM) -0.44 >More info -0.63 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
61 Day Time Treatment -0.45 >More info -0.62 >More info Day Time Control 1hr white light pulse aerial rosette Original data
62 CBF3 0mM NaCl 0.48 >More info 0.59 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
63 Nicotinamide-69hr 0.52 >More info 0.54 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
64 Cold Stress 24 h (shoot) 0.48 >More info 0.58 >More info Stress mock 24 h (shoot) Original data Stress treatments
65 Mutant gh3.5-1D (AvrRpt2) 0.46 >More info 0.60 >More info Col-0 (AvrRpt2) Original data GEO bulk
66 Root submergence 7h 0.47 >More info 0.59 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
67 RGA-GR-DEX 0.38 >More info 0.67 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
68 Ws leaf 100mM NaCl 0.43 >More info 0.62 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
69 Ws 100mM NaCl 0.43 >More info 0.62 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
70 OsRLCK253 expressing -0.44 >More info -0.61 >More info WT seedlings Original data GEO bulk
71 gh3.5-1D 48 hpi 0.49 >More info 0.56 >More info Col-0 uninoculated Original data GEO bulk
72 Nicotinamide-49hr 0.51 >More info 0.53 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
73 Nicotinamide-73hr 0.53 >More info 0.51 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
74 toc1-1-77hr 0.42 >More info 0.61 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
75 Root dark control 7h 0.46 >More info 0.57 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
76 Dark 4 h pls UV-A 5 min -0.38 >More info -0.64 >More info Dark 4 h Original data Light treatments
77 gun4-1 0.47 >More info 0.55 >More info WT Col-0 seedling Original data GEO bulk
78 mil4 sid2 0.42 >More info 0.60 >More info Col rosettes Original data GEO bulk
79 ABA JA 24h 0.27 >More info 0.74 >More info EtOH 24h 24hr Original data GEO bulk
80 35SpBVR3 0.43 >More info 0.58 >More info WT Original data GEO bulk
81 Botrytis cinerea 48h 0.46 >More info 0.55 >More info control 48h Original data GEO bulk
82 rpoTmp(line) MLD stressed 0.43 >More info 0.58 >More info WT(Col0) MLD stressed (control rpoTmp) leaf Original data
83 mkk1/mkk2 24h BTH rep 0.51 >More info 0.49 >More info Col-0 24h BTH rep Original data GEO bulk
84 camta1-2 0.42 >More info 0.58 >More info Col-0-WT Original data GEO bulk
85 sid2 0.45 >More info 0.55 >More info Col rosettes Original data GEO bulk
86 low CO2 + light 0.51 >More info 0.48 >More info normal CO2 + light Original data GEO bulk
87 ABA 3 h 0.39 >More info 0.60 >More info Mock 3 h Original data Basic hormone treatment of seedlings
88 Light 4h steady-state -0.44 >More info -0.55 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
89 Light 4h polysome-bound -0.44 >More info -0.55 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
90 WT 24H Cold 0.42 >More info 0.57 >More info WT control Original data GEO bulk
91 Col-0 leaf drought 0.46 >More info 0.53 >More info Col-0 leaf water leaf Original data GEO bulk
92 Col BTH 0.32 >More info 0.67 >More info Col rosettes Original data GEO bulk
93 ALC Toc1 light-dark EtOH -0.52 >More info -0.46 >More info Col light-dark EtOH 2.5% ethanol Original data GEO bulk
94 sfr2 control -0.55 >More info -0.43 >More info WT control All aerial tissue Original data GEO bulk
95 tfl1-1-23ºC 0.48 >More info 0.50 >More info WT-23ºC Original data GEO bulk
96 Laer pretreat GA Flg22 1h 0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
97 1 h Light IP RNA -0.39 >More info -0.59 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
98 gai Flg22 1h 0.40 >More info 0.57 >More info Laer Flg22 1h leaf discs Original data GEO bulk
99 nhx5-1/nhx6 0.35 >More info 0.62 >More info WT Rosette leaf Original data GEO bulk
100 6h volatiles Sm. R3089 0.23 >More info 0.74 >More info 6h untreated whole seedling Original data GEO bulk
101 Sulfometuron EC50 0.46 >More info 0.51 >More info Carrier Original data GEO bulk
102 MIL4 ox 0.44 >More info 0.53 >More info Col Original data GEO bulk
103 high-R:FR bud axillary -0.40 >More info -0.56 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
104 Osmotic Stress 24 h (root) 0.45 >More info 0.51 >More info Stress mock 24 h (root) Original data Stress treatments
105 tt4 0.42 >More info 0.54 >More info Col-0 aerial part Original data
106 gai Flg22 2h 0.39 >More info 0.56 >More info Laer Flg22 2h leaf discs Original data GEO bulk
107 Atss3 Light4 -0.37 >More info -0.58 >More info Atss3 Dark0.5 Original data GEO bulk
108 aphid saliva treated 0.45 >More info 0.50 >More info control aphid saliva treated leaves Original data GEO bulk
109 Myzus persicae saliva 0.45 >More info 0.50 >More info Control Original data GEO bulk
110 ABA control 0.36 >More info 0.59 >More info No ABA control Original data GEO bulk
111 Uniconazole 12 h 0.35 >More info 0.59 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
112 M6PR transgenic leaf 0mM NaCl 0.35 >More info 0.59 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
113 cca1-lhy 30m light 0.37 >More info 0.57 >More info 30m light whole seedlings Original data GEO bulk
114 cngc4 0.43 >More info 0.51 >More info Ws-2 Seedlings Original data GEO bulk
115 pap1-D/tt4 0.41 >More info 0.53 >More info Col-0 aerial part Original data
116 penta Alternaria 3dpi 0.38 >More info 0.55 >More info Laer Alternaria 3dpi leaf discs Original data GEO bulk
117 Nicotinamide-65hr 0.50 >More info 0.43 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
118 M6PR transgenic 0mM NaCl 0.41 >More info 0.51 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
119 seedling 6h after HZE atm-1 0.33 >More info 0.59 >More info seedling day 1 unirradiated atm-1 6h Original data
120 ABA 1 h 0.27 >More info 0.64 >More info Mock 1 h Original data Basic hormone treatment of seedlings
121 SOS1 0mM NaCl 0.37 >More info 0.54 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
122 seedling 24h after Gamma atm-1 -0.34 >More info -0.56 >More info seedling day 2 unirradiated atm-1 24h Original data
123 pif4pif5 mut dark -0.27 >More info -0.63 >More info WT dark Original data GEO bulk
124 MYB12OX/tt4 0.38 >More info 0.52 >More info Col-0 aerial part Original data
125 lug3 leaves -0.39 >More info -0.50 >More info WT-leaves matured rosette leaves Original data GEO bulk
126 ein3 eil1 JA -0.36 >More info -0.53 >More info JA Whole seedling Original data GEO bulk
127 CabpBVR2 0.36 >More info 0.53 >More info WT Original data GEO bulk
128 CHLM overexpression -0.39 >More info -0.50 >More info Col-0 estr green tissue Original data GEO bulk
129 gun1gun5 drak pretreated 0.37 >More info 0.52 >More info WT drak pretreated Original data GEO bulk
130 rosette leaves fdh 0.32 >More info 0.56 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
131 clf-28 swn-7 0.38 >More info 0.50 >More info Col whole plant Original data GEO bulk
132 Heat shock optimum 0.23 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
133 Col-0 +lincomycin 0.28 >More info 0.60 >More info Col-0 -lincomycin Original data GEO bulk
134 Dark 2day ivd 0.88 >More info -0.01 >More info 0h ivd Original data
135 pXVE:HA-EDM2-a untreated 0.34 >More info 0.52 >More info Col-0 untreated seedlings Original data GEO bulk
136 12h-DC3000 avrRpm1 0.22 >More info 0.64 >More info 12h-DC3000 leaves Original data GEO bulk
137 rosette leaves lcr 0.33 >More info 0.52 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
138 leaf blade in D 0.34 >More info 0.51 >More info leaf blade in WL leaf blades Original data GEO bulk
139 Atss3 Light1 -0.22 >More info -0.62 >More info Atss3 Dark0.5 Original data GEO bulk
140 oas-a1.1 root -0.26 >More info -0.58 >More info WT-Untreated Root Original data GEO bulk
141 ABA 0.26 >More info 0.58 >More info control Original data GEO bulk
142 rosettes atx drought 0.50 >More info 0.33 >More info rosettes atx watered Original data GEO bulk
143 AFB1 0h 0.27 >More info 0.56 >More info Col 0h Leaf Original data GEO bulk
144 Cd 18h root -0.22 >More info -0.61 >More info WT-Untreated Root Original data GEO bulk
145 Mutant gh3.5-1D 0.27 >More info 0.54 >More info Col-0 Original data GEO bulk
146 ABA SA 24h 0.27 >More info 0.54 >More info EtOH 24h 24hr Original data GEO bulk
147 4h decapitation -0.22 >More info -0.59 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
148 Cs root -0.15 >More info -0.65 >More info control root Original data GEO bulk
149 root endodermis and quiescent center 40 mM NaCl 0.25 >More info 0.55 >More info root endodermis and quiescent center Original data GEO bulk
150 Paclobutrazol 12 h 0.28 >More info 0.51 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
151 NaCl Col 0.27 >More info 0.52 >More info Col Original data GEO bulk
152 Whole root - S 3H -0.21 >More info -0.58 >More info Whole root - S 0H Original data GEO bulk
153 treated group 0.21 >More info 0.58 >More info Control group Original data
154 rosette leaves bdg 0.18 >More info 0.60 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
155 ABA 24h 0.24 >More info 0.54 >More info EtOH 24h 24hr Original data GEO bulk
156 root longitudinal zone-4 NaCl 0.22 >More info 0.56 >More info root longitudinal zone-4 Original data GEO bulk
157 35S::CBF2 0.21 >More info 0.57 >More info Ws2 Original data GEO bulk
158 SCR-GR Time 1H Dex 0.21 >More info 0.56 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
159 PstDC3000 48h -0.22 >More info -0.55 >More info WT untreated 48hr leaf Original data GEO bulk
160 cca1-lhy 15m light 0.27 >More info 0.50 >More info 15m light whole seedlings Original data GEO bulk
161 nhx5-2/nhx6 0.27 >More info 0.50 >More info WT Rosette leaf Original data GEO bulk
162 siliques AtHb1 control 0.24 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
163 Red Light 4 h 0.21 >More info 0.54 >More info White Light 4 h Original data Light treatments
164 ABA+DMTU 0.22 >More info 0.53 >More info control Original data GEO bulk
165 ACC 3 h 0.20 >More info 0.54 >More info Mock 3 h Original data Basic hormone treatment of seedlings
166 cca1-lhy 60m light 0.14 >More info 0.59 >More info 60m light whole seedlings Original data GEO bulk
167 35SAvr 0.22 >More info 0.50 >More info Ecotype Col Original data GEO bulk
168 Mutant lwd1_lwd2 0.18 >More info 0.53 >More info Wildtype for phy mutants Original data GEO bulk
169 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.18 >More info 0.53 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
170 tmm1-inflorescence-tips -0.14 >More info -0.56 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
171 WT Na2S -0.17 >More info -0.53 >More info WT water Na2S leaf Original data GEO bulk
172 light -0.52 >More info -0.18 >More info dark light seedling Original data GEO bulk
173 rdr1-1 -0.19 >More info -0.50 >More info Col-0 Original data GEO bulk
174 AmGSTF1 expressor 0.18 >More info 0.51 >More info WT leaf tissue Original data GEO bulk
175 toc1-1-93hr 0.15 >More info 0.52 >More info WT-untreated-93hr none seedlings aerial tissue Original data GEO bulk
176 Root wt CLE10 0.16 >More info 0.51 >More info Root wt CLE25 root tip Original data GEO bulk
177 Light 3day ivd -0.03 >More info -0.63 >More info 0h ivd Original data
178 35S::Zat12 0.15 >More info 0.51 >More info WT Original data GEO bulk
179 Shoot submergence 7h 0.65 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
180 16h Col-0 0.12 >More info 0.53 >More info 00h Col-0 Original data GEO bulk
181 seedling 3h after HZE WT 0.62 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
182 bri1-116 -0.09 >More info 0.73 >More info Col seedling Original data GEO bulk
183 seed germinating in countinuous light 24h SL -0.03 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
184 opr3 OPDA 2 h 0.09 >More info 0.54 >More info opr3 0 h Original data GEO bulk
185 IAA7mII over-expressor IAA Treated -0.09 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
186 triploid female excess -0.09 >More info -0.51 >More info tetraploid Original data GEO bulk
187 seedling 12h after HZE atm-1 0.03 >More info 0.57 >More info seedling day 1 unirradiated atm-1 12h Original data
188 seedling 12h after Gamma atm-1 0.06 >More info 0.52 >More info seedling day 1 unirradiated atm-1 12h Original data
189 eds16 whole leaf 3dpi 0.03 >More info 0.54 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
190 20h Col-0 0.04 >More info 0.53 >More info 00h Col-0 Original data GEO bulk
191 FarRed Light 45min 0.10 >More info -0.66 >More info White Light 45min Original data Light treatments
192 long 14-degree- -0.01 >More info -0.54 >More info control long Original data GEO bulk
193 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
194 Shoot apex inflorescence (after bolting) -0.14 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
195 downy mildew cotyledons late stage 0.08 >More info -0.59 >More info mock inoculated Cotyledons Original data GEO bulk
196 T101D 10mM NH4NO3 -0.04 >More info 0.53 >More info col 10mM NH4NO3 Root Original data
197 eds16 whole leaf 7d UI -0.06 >More info 0.53 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
198 Fei-0-30min IAA 0.07 >More info -0.51 >More info Fei-0-0h IAA whole plant Original data GEO bulk
199 4d red light grown hmr-22 seedlings 0.54 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data