4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Dark 1day wt
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List of experiments correlated with "Dark 1day wt"  Help Download transcriptome of top 30
Score Experiment Correlation from
Dark 1day wt		 Correlation to
Dark 1day wt		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Dark 1day wt 1.00 >More info 1.00 >More info 0h wt Original data
2 Dark 1day hml 0.93 >More info 0.93 >More info 0h hml Original data
3 Dark 1day ivd 0.90 >More info 0.92 >More info 0h ivd Original data
4 Dark 2day wt 0.90 >More info 0.91 >More info 0h wt Original data
5 Dark 3day wt 0.89 >More info 0.87 >More info 0h wt Original data
6 Dark 2day hml 0.88 >More info 0.86 >More info 0h hml Original data
7 Dark 6h wt 0.86 >More info 0.88 >More info 0h wt Original data
8 Dark 3day hml 0.87 >More info 0.86 >More info 0h hml Original data
9 Dark 6h hml 0.86 >More info 0.86 >More info 0h hml Original data
10 Dark 6h ivd 0.82 >More info 0.86 >More info 0h ivd Original data
11 Dark 3day ivd 0.83 >More info 0.74 >More info 0h ivd Original data
12 Shoot dark control 24h 0.66 >More info 0.84 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
13 Shoot dark control 7h 0.64 >More info 0.82 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
14 Shoot submergence 24h 0.62 >More info 0.79 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
15 seedling 1.5h after HZE atm-1 0.60 >More info 0.78 >More info seedling day 1 unirradiated atm-1 1.5h Original data
16 low CO2 + dark 0.53 >More info 0.78 >More info normal CO2 + light Original data GEO bulk
17 WT hypoxia 0.53 >More info 0.75 >More info WT normoxia whole rosette Original data
18 seedling 1.5h after HZE WT 0.58 >More info 0.68 >More info seedling day 1 unirradiated WT 1.5h Original data
19 WT Red light 18h -0.53 >More info -0.72 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
20 Pseudomonas 0.49 >More info 0.75 >More info Control pseudomonas treated whole seedling Original data GEO bulk
21 WT (Col) glucose -0.49 >More info -0.75 >More info WT (Col) glucose seedlings Original data GEO bulk
22 Day Time Treatment -0.50 >More info -0.68 >More info Day Time Control 1hr white light pulse aerial rosette Original data
23 detached inflorescences 24h 0.51 >More info 0.66 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
24 4d red light grown hmr-5 seedlings 0.52 >More info 0.65 >More info 4d red light grown WT(Col-0) seedlings Original data
25 Light 4h steady-state -0.50 >More info -0.65 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
26 Col-0 C2H4 24h 0.51 >More info 0.63 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
27 Light 4h polysome-bound -0.50 >More info -0.63 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
28 24h light (+Lincomycin) 0.48 >More info 0.63 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
29 pif4pif5 mut 1h FR -0.42 >More info -0.68 >More info WT 1h FR Original data GEO bulk
30 OsRLCK253 expressing -0.47 >More info -0.62 >More info WT seedlings Original data GEO bulk
31 Dark 4 h pls RedLight 1min -0.41 >More info -0.67 >More info Dark 4 h Original data Light treatments
32 det2 light-dark 0.45 >More info 0.63 >More info det2 light light-dark Original data GEO bulk
33 sex1-3 0.32 >More info 0.76 >More info Col-WT leaves Original data GEO bulk
34 camta1-2 0.42 >More info 0.65 >More info Col-0-WT Original data GEO bulk
35 RGA-GR-DEX 0.37 >More info 0.70 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
36 Col-0 DCA 48h -0.47 >More info -0.59 >More info Col-0 MOCK 48h Original data GEO bulk
37 1 h Light Total RNA -0.46 >More info -0.60 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
38 WT (Col-0) inflorescence drought day 5 0.46 >More info 0.60 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
39 T6 leaf-drought 0.38 >More info 0.66 >More info T6 leaf-well watered Original data GEO bulk
40 ptpks2 -0.34 >More info -0.70 >More info Col-WT leaves Original data GEO bulk
41 mil4 sid2 0.43 >More info 0.61 >More info Col rosettes Original data GEO bulk
42 max3GR24 (1 uM) -0.41 >More info -0.62 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
43 aerial organ callus inducing medium 48 h 0.46 >More info 0.57 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
44 Root submergence 7h 0.43 >More info 0.59 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
45 Root dark control 7h 0.43 >More info 0.59 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
46 Root dark control 24h 0.43 >More info 0.59 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
47 35SpBVR3 0.41 >More info 0.61 >More info WT Original data GEO bulk
48 seedling 24h after Gamma atm-1 -0.39 >More info -0.63 >More info seedling day 2 unirradiated atm-1 24h Original data
49 aerial organ callus inducing medium 12 h 0.47 >More info 0.54 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
50 high-R:FR bud axillary -0.39 >More info -0.62 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
51 Dark 4 h pls UV-A 5 min -0.37 >More info -0.63 >More info Dark 4 h Original data Light treatments
52 gai Flg22 1h 0.41 >More info 0.59 >More info Laer Flg22 1h leaf discs Original data GEO bulk
53 Root submergence 24h 0.42 >More info 0.58 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
54 aerial organ callus inducing medium 96 h 0.42 >More info 0.58 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
55 NahG 0.43 >More info 0.57 >More info Col-0 Leaves Original data GEO bulk
56 MIL4 ox 0.42 >More info 0.58 >More info Col Original data GEO bulk
57 Dark 4 h pls UV-AB 5min -0.44 >More info -0.55 >More info Dark 4 h Original data Light treatments
58 T8 leaf-drought 0.40 >More info 0.59 >More info T8 leaf-well watered Original data GEO bulk
59 gai Flg22 2h 0.46 >More info 0.53 >More info Laer Flg22 2h leaf discs Original data GEO bulk
60 ABA JA 24h 0.28 >More info 0.71 >More info EtOH 24h 24hr Original data GEO bulk
61 gun1gun5 drak pretreated 0.41 >More info 0.58 >More info WT drak pretreated Original data GEO bulk
62 pap1-D/tt4 0.43 >More info 0.56 >More info Col-0 aerial part Original data
63 Cd 18h root -0.34 >More info -0.64 >More info WT-Untreated Root Original data GEO bulk
64 Nicotinamide-93hr 0.46 >More info 0.52 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
65 ced1 -0.43 >More info -0.55 >More info WT PEG 6hr seedlings Original data GEO bulk
66 low CO2 + light 0.41 >More info 0.57 >More info normal CO2 + light Original data GEO bulk
67 6h volatiles Sm. R3089 0.26 >More info 0.72 >More info 6h untreated whole seedling Original data GEO bulk
68 sid2 0.44 >More info 0.54 >More info Col rosettes Original data GEO bulk
69 WT (Col-0) inflorescence drought day 10 0.46 >More info 0.52 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
70 1 h Light IP RNA -0.38 >More info -0.59 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
71 MYB12OX/tt4 0.41 >More info 0.56 >More info Col-0 aerial part Original data
72 At1g54160 ox -0.43 >More info -0.53 >More info Col-0 Original data GEO bulk
73 Col-0 overexpressing At1g54160 control -0.43 >More info -0.53 >More info WT no treatement Original data GEO bulk
74 Nicotinamide-69hr 0.42 >More info 0.54 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
75 seedling 24h after Gamma WT -0.37 >More info -0.59 >More info seedling day 2 unirradiated WT 24h Original data
76 Cold Stress 24 h (shoot) 0.40 >More info 0.55 >More info Stress mock 24 h (shoot) Original data Stress treatments
77 CBF3 0mM NaCl 0.40 >More info 0.55 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
78 elevated CO2 low Mg shoot -0.52 >More info -0.43 >More info atmospheric CO2 low Mg shoot Shoot Original data
79 pXVE:HA-EDM2-a untreated 0.38 >More info 0.57 >More info Col-0 untreated seedlings Original data GEO bulk
80 gun4-1 0.43 >More info 0.52 >More info WT Col-0 seedling Original data GEO bulk
81 tt4 0.39 >More info 0.55 >More info Col-0 aerial part Original data
82 WT mitomycin C -0.44 >More info -0.50 >More info WT mock shoot apical meristem Original data
83 hai1-2 low water potential 0.43 >More info 0.51 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
84 Col-0 +lincomycin 0.31 >More info 0.63 >More info Col-0 -lincomycin Original data GEO bulk
85 lht1 untreated -0.30 >More info -0.63 >More info WT untreated untreated leaf Original data GEO bulk
86 Osmotic Stress 24 h (shoot) 0.38 >More info 0.53 >More info Stress mock 24 h (shoot) Original data Stress treatments
87 Col-0 DEX Shade 0.37 >More info 0.54 >More info Col-0 DEX WL seedlings Original data
88 tmm1-inflorescence-tips -0.26 >More info -0.65 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
89 Uniconazole 12 h 0.31 >More info 0.60 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
90 Whole root - S 3H -0.30 >More info -0.61 >More info Whole root - S 0H Original data GEO bulk
91 Leafminer damaged seedlings 0.34 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
92 cngc4 0.35 >More info 0.55 >More info Ws-2 Seedlings Original data GEO bulk
93 Mutant sav3-2 (WL) -0.33 >More info -0.56 >More info Col-0 (WL) Original data GEO bulk
94 sav3-2 light -0.33 >More info -0.56 >More info Col-0 light seedlings Original data GEO bulk
95 Paclobutrazol 12 h 0.26 >More info 0.63 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
96 pGL1::GL1-GR Dex 24hours 0.37 >More info 0.52 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
97 cca1-lhy 30m light 0.36 >More info 0.53 >More info 30m light whole seedlings Original data GEO bulk
98 M6PR transgenic leaf 0mM NaCl 0.32 >More info 0.56 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
99 piffq FR 3h -0.34 >More info -0.54 >More info WT FR 3h whole seedling Original data GEO bulk
100 Red Light 4 h 0.24 >More info 0.64 >More info White Light 4 h Original data Light treatments
101 4h decapitation -0.28 >More info -0.60 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
102 spch 0.38 >More info 0.50 >More info Col-0 WT whole seedling Original data GEO bulk
103 toc1-1-77hr 0.30 >More info 0.58 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
104 Dark 2day ivd 0.88 >More info -0.01 >More info 0h ivd Original data
105 Col0-PsmES4326-24hpi 0.26 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
106 seedling 6h after HZE atm-1 0.31 >More info 0.55 >More info seedling day 1 unirradiated atm-1 6h Original data
107 cca1-lhy 60m light 0.26 >More info 0.60 >More info 60m light whole seedlings Original data GEO bulk
108 nhx5-1/nhx6 0.27 >More info 0.59 >More info WT Rosette leaf Original data GEO bulk
109 AmGSTF1 expressor 0.28 >More info 0.58 >More info WT leaf tissue Original data GEO bulk
110 oas-a1.1 root -0.29 >More info -0.57 >More info WT-Untreated Root Original data GEO bulk
111 Heat shock optimum 0.20 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
112 M6PR transgenic 0mM NaCl 0.34 >More info 0.51 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
113 Whole root - S 12H -0.32 >More info -0.53 >More info Whole root - S 0H Original data GEO bulk
114 Night Time Treatment -0.34 >More info -0.51 >More info Night Time Control 1hr white light pulse aerial rosette Original data
115 Laer pretreat GA Flg22 1h 0.14 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
116 CabpBVR2 0.30 >More info 0.54 >More info WT Original data GEO bulk
117 leaf blade in D 0.33 >More info 0.50 >More info leaf blade in WL leaf blades Original data GEO bulk
118 dor drought 0.28 >More info 0.54 >More info WT drought Original data GEO bulk
119 Atss3 Light4 -0.29 >More info -0.53 >More info Atss3 Dark0.5 Original data GEO bulk
120 WT leaves - Fe -0.31 >More info -0.51 >More info WT leaves + Fe Leaves Original data GEO bulk
121 penta mutant (higher order mutant) 0.28 >More info 0.52 >More info col control (higher order mutant) Original data GEO bulk
122 lht1 PstDC3000 48h -0.25 >More info -0.55 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
123 tetraploid 0.28 >More info 0.52 >More info diploid Original data GEO bulk
124 ABA 1 h 0.23 >More info 0.57 >More info Mock 1 h Original data Basic hormone treatment of seedlings
125 3x(p) 0.22 >More info 0.58 >More info 2x two week old seedlings Original data
126 sfr2 control -0.51 >More info -0.28 >More info WT control All aerial tissue Original data GEO bulk
127 eds16 whole leaf 3dpi 0.15 >More info 0.64 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
128 Col BTH 0.12 >More info 0.67 >More info Col rosettes Original data GEO bulk
129 php 0.26 >More info 0.52 >More info WT Original data GEO bulk
130 WT Na2S -0.23 >More info -0.55 >More info WT water Na2S leaf Original data GEO bulk
131 A2hsfa1-ox in quadruple mutant -0.25 >More info -0.53 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
132 downy mildew cotyledons late stage -0.12 >More info -0.65 >More info mock inoculated Cotyledons Original data GEO bulk
133 SOS1 0mM NaCl 0.27 >More info 0.50 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
134 Mutant lwd1_lwd2 0.25 >More info 0.51 >More info Wildtype for phy mutants Original data GEO bulk
135 Atss3 Light1 -0.19 >More info -0.57 >More info Atss3 Dark0.5 Original data GEO bulk
136 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.25 >More info 0.51 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
137 AFB1 0h 0.13 >More info 0.63 >More info Col 0h Leaf Original data GEO bulk
138 eds16 whole leaf 7d UI 0.14 >More info 0.61 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
139 seed germinating in countinuous light 24h SL 0.07 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
140 Cs root -0.19 >More info -0.55 >More info control root Original data GEO bulk
141 bri1-116 0.00 >More info 0.73 >More info Col seedling Original data GEO bulk
142 Light 3day wt 0.06 >More info 0.66 >More info 0h wt Original data
143 pip3 At2g19270 TDNA 9 0.22 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
144 Mutant siz1-3 -0.20 >More info -0.50 >More info Col-0 Original data GEO bulk
145 siz1-3 control -0.20 >More info -0.50 >More info Col-0 control Original data GEO bulk
146 Wt-BA-sample 0.18 >More info 0.52 >More info Wt-dmso-sample seedling Original data
147 Light 3day hml 0.05 >More info 0.63 >More info 0h hml Original data
148 long 14-degree- -0.16 >More info -0.52 >More info control long Original data GEO bulk
149 30m light -0.17 >More info -0.51 >More info before light whole seedlings Original data GEO bulk
150 siliques AtHb1 control 0.15 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
151 aba3-1 -0.07 >More info -0.60 >More info wt Original data GEO bulk
152 Prohexadione 3 h 0.10 >More info 0.56 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
153 Shoot apex inflorescence (after bolting) 0.00 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
154 pif4pif5 mut dark -0.10 >More info -0.55 >More info WT dark Original data GEO bulk
155 sid2-avrB-6h 0.12 >More info 0.53 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
156 35S::CBF2 0.09 >More info 0.56 >More info Ws2 Original data GEO bulk
157 SCR-GR Time 1H Dex 0.11 >More info 0.53 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
158 Col-0 INA 48h -0.07 >More info -0.56 >More info Col-0 MOCK 48h Original data GEO bulk
159 B.cinerea 18 h infection 0.06 >More info -0.69 >More info Mock 18 h Original data Botrytis cinerea infection
160 Botrytis cinerea 18h 0.06 >More info -0.69 >More info control 18h Original data GEO bulk
161 sid2 0.07 >More info 0.55 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
162 Shoot submergence 7h 0.61 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
163 seedling 3h after HZE WT 0.58 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
164 3x(m) 0.04 >More info 0.55 >More info 2x two week old seedlings Original data
165 IAA7mII over-expressor IAA Treated -0.12 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
166 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
167 SA 24h 0.02 >More info -0.51 >More info EtOH 24h 24hr Original data GEO bulk
168 35S:VND7-VP16-GR+CHX 0.07 >More info -0.55 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
169 sid2-1 cold -0.06 >More info 0.51 >More info WT cold 3 week cold entire aerial part Original data GEO bulk