4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on FAMA induced 4h
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List of experiments correlated with "FAMA induced 4h"  Help Download transcriptome of top 30
Score Experiment Correlation from
FAMA induced 4h
Correlation to
FAMA induced 4h
Control Experiment Genotype Treatment Tissue Link to
original data
Experimental
Category
Data set
Details
1 FAMA induced 4h 1.00 >More info 1.00 >More info control 4h Whole seedling Original data GEO bulk
2 entire vegetative rosette 0.56 >More info 0.58 >More info Col-0 Mock WL entire vegetative rosette Original data
3 12h Col-0 0.56 >More info 0.57 >More info 00h Col-0 Original data GEO bulk
4 DUO1 induced 12h 0.56 >More info 0.56 >More info 12hr-not-induced whole plant Original data GEO bulk
5 Whole root - low pH 48H -0.42 >More info -0.68 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
6 08h Col-0 0.47 >More info 0.62 >More info 00h Col-0 Original data GEO bulk
7 WT 3h -P -0.47 >More info -0.61 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
8 Brz220 12 h 0.39 >More info 0.65 >More info Mock 12 h Original data Effect of brassinosteroid inhibitors on seedlings
9 04h Col-0 0.53 >More info 0.49 >More info 00h Col-0 Original data GEO bulk
10 pnp1-1 3h +P -0.72 >More info -0.28 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
11 A2hsfa1-ox in quadruple mutant heat shock 0.57 >More info 0.42 >More info hsfa1 quadruple mutant heat shock whole seedling Original data GEO bulk
12 DUO1 induced 24h 0.46 >More info 0.53 >More info 24hr-not-induced whole plant Original data GEO bulk
13 psad1 -0.52 >More info -0.46 >More info WS rosette leaves Original data GEO bulk
14 cngc1-3 -0.42 >More info -0.56 >More info Col-0 root Original data GEO bulk
15 NaCl scm -0.42 >More info -0.56 >More info NaCl Col Original data GEO bulk
16 shoots WT 0uM Fe -0.51 >More info -0.46 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
17 petiole in D -0.60 >More info -0.37 >More info petiole in WL petioles Original data GEO bulk
18 shoots bhlh100/101 100uM Fe -0.58 >More info -0.39 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
19 A2hsfa1-ox in quadruple mutant 0.56 >More info 0.40 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
20 Night Time Treatment 0.57 >More info 0.39 >More info Night Time Control 1hr white light pulse aerial rosette Original data
21 dark-hs 0.52 >More info 0.43 >More info dark-control seedling Original data
22 pnp1-1 1wk -P -0.56 >More info -0.38 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
23 hrpA fliC 7h -0.56 >More info -0.38 >More info Mock 7h hrpA fliC Original data GEO bulk
24 ABA 3 h 0.35 >More info 0.57 >More info Mock 3 h Original data Basic hormone treatment of seedlings
25 petiole in FRD -0.65 >More info -0.26 >More info petiole in WL petioles Original data GEO bulk
26 leaf blade in D -0.51 >More info -0.40 >More info leaf blade in WL leaf blades Original data GEO bulk
27 WT 30μM phosphate 8 hours. -0.32 >More info -0.58 >More info WT control (not supplemented). Original data
28 leaf blade in FRD -0.53 >More info -0.36 >More info leaf blade in WL leaf blades Original data GEO bulk
29 Dry pre-dawn 0.35 >More info 0.54 >More info Wet pre-dawn water-limited whole rosette Original data GEO bulk
30 glk1 glk2 GLK1-GR +DEX 4h -0.53 >More info -0.35 >More info glk1 glk2 GLK1-GR mock 4h dexamethasone whole seedlings Original data GEO bulk
31 GRX-overexpression seedlings NaCl 0.35 >More info 0.53 >More info WT seedlings NaCl Seedlings Original data GEO bulk
32 Laer Alternaria 3dpi 0.50 >More info 0.37 >More info Laer Control leaf discs Original data GEO bulk
33 bri1-116 0.14 >More info 0.73 >More info Col seedling Original data GEO bulk
34 Laer MeJA 1h 0.50 >More info 0.36 >More info Laer Control leaf discs Original data GEO bulk
35 Col BRZ -0.51 >More info -0.34 >More info Col mock Original data GEO bulk
36 60m light 0.29 >More info 0.56 >More info before light whole seedlings Original data GEO bulk
37 pnp1-1 3h -P -0.69 >More info -0.16 >More info WT 3h -P No phosphate medium seedlings without roots Original data GEO bulk
38 Ovary 0.26 >More info 0.59 >More info Seedling Original data GEO bulk
39 cngc19 -0.50 >More info -0.34 >More info Col-0 root Original data GEO bulk
40 30m light 0.30 >More info 0.53 >More info before light whole seedlings Original data GEO bulk
41 Stem tissue 5 days NAA -0.52 >More info -0.30 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
42 bio4-1 mutant leaves -0.51 >More info -0.31 >More info WT leaves leaves Original data GEO bulk
43 Prohexadione 3 h 0.27 >More info 0.54 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
44 Col-0 HS 0.26 >More info 0.55 >More info Col-0 control heat shocked seedling Original data GEO bulk
45 Stigma 0.29 >More info 0.52 >More info Seedling Original data GEO bulk
46 WT (Col-0) heat shock 0.26 >More info 0.55 >More info WT (Col-0) whole seedling Original data GEO bulk
47 seedling 6h after HZE atm-1 0.30 >More info 0.51 >More info seedling day 1 unirradiated atm-1 6h Original data
48 hrpA 7h -0.57 >More info -0.24 >More info Mock 7h hrpA Original data GEO bulk
49 Day Time Treatment 0.52 >More info 0.28 >More info Day Time Control 1hr white light pulse aerial rosette Original data
50 tumour -0.61 >More info -0.19 >More info non-tumor tumour Original data GEO bulk
51 E.coli TUV86 2 fliC 7h -0.57 >More info -0.23 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
52 Shoot submergence 24h -0.60 >More info -0.19 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
53 C58 35dpi -0.62 >More info -0.17 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
54 Imbibed 24 h ABA 30uM (seed) 0.27 >More info 0.52 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
55 RGA-GR-DEX -0.62 >More info -0.16 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
56 Methyl Jasmonate 0.5 h 0.28 >More info 0.50 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
57 Laer GA 1h 0.11 >More info 0.67 >More info Laer Control leaf discs Original data GEO bulk
58 3x(m) -0.08 >More info -0.70 >More info 2x two week old seedlings Original data
59 1.5 hr ammonium -0.50 >More info -0.27 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
60 Rsch 3d -0.50 >More info -0.27 >More info Rsch CA Leaves Original data
61 cortex -0.23 >More info -0.54 >More info Control for tissue data cortex Original data GEO bulk
62 Heat shock optimum 0.12 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
63 AsAKiin11 T1 -0.24 >More info -0.53 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
64 root cells columella root cap -Fe 0.26 >More info 0.50 >More info whole roots standard Original data GEO bulk
65 mpk6-ko H2O 4h -0.06 >More info -0.70 >More info Col-0 H2O 4h Original data GEO bulk
66 seed germinating in countinuous light 48 h SL -0.19 >More info -0.57 >More info Control for tissue data seed Original data GEO bulk
67 2hr transitory KNO3 PeR cell 0.21 >More info 0.55 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
68 Elevated CO2 leaf primordia -0.26 >More info -0.50 >More info Ambient CO2 leaf primordia leaf primordia Original data
69 Te 3d -0.52 >More info -0.23 >More info Te CA Leaves Original data
70 pif4pif5 low R/FR -0.51 >More info -0.23 >More info Col-0 low R/FR low R/FR seedlings Original data GEO bulk
71 dde2-2 9 hpi A. brassicicola -0.52 >More info -0.22 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
72 hrcC -0.63 >More info -0.11 >More info MgCl2 5x10^7 cfu/ml DC3000 hrcC mutant Original data GEO bulk
73 tt4 -0.51 >More info -0.23 >More info Col-0 aerial part Original data
74 Shoot apex inflorescence (after bolting) 0.09 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
75 mature endodermis glcal -0.22 >More info -0.52 >More info Control for tissue data endodermis Original data GEO bulk
76 siliques AtHb1 control 0.22 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
77 Callus -0.24 >More info -0.50 >More info Control for tissue data callus Original data GEO bulk
78 2hr continuous KNO3 EPR cell -0.50 >More info -0.23 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
79 auxin and brassinazole seedlings -0.53 >More info -0.20 >More info auxin seedlings Original data GEO bulk
80 Starch sheath 2 days NAA -0.18 >More info -0.55 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
81 col-5 hrpA 4h -0.56 >More info -0.16 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
82 Mature roots -0.17 >More info -0.54 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
83 Te 1d -0.52 >More info -0.19 >More info Te CA Leaves Original data
84 col-5 hrpA 12h -0.70 >More info -0.01 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
85 Ws HS 0.17 >More info 0.53 >More info Ws control heat shocked seedling Original data GEO bulk
86 mpk6-ko Flg22 4h -0.59 >More info -0.11 >More info mpk6-ko H2O 4h Original data GEO bulk
87 phloem sieve cells and companion cells -0.18 >More info -0.50 >More info Control for tissue data phloem Original data GEO bulk
88 exo70A1 -0.50 >More info -0.17 >More info Col-0 whole plant Original data GEO bulk
89 Hypocotyl -0.13 >More info -0.54 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
90 agb1 +ABA GC -0.02 >More info -0.64 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
91 sng1 UV -0.15 >More info -0.51 >More info UV aerial region Original data GEO bulk
92 Dark 44min pls RedLigh 1min 0.57 >More info 0.09 >More info Dark 45 min Original data Light treatments
93 NAA +AA 0.09 >More info 0.57 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
94 Mutant arf2-6 0.51 >More info 0.14 >More info Col Original data GEO bulk
95 sav1-1 shade -0.54 >More info -0.11 >More info Col-0 shade seedlings Original data GEO bulk
96 rts1-5 -0.55 >More info -0.10 >More info null-mutant whole plant Original data GEO bulk
97 ABA 0.5 h 0.13 >More info 0.52 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
98 pmr5 pmr6 -0.60 >More info -0.04 >More info Col-0 Original data GEO bulk
99 A1-1 -0.11 >More info -0.53 >More info WT Original data GEO bulk
100 seedling -0.04 >More info -0.60 >More info Control for tissue data seedling Original data GEO bulk
101 cs26 long day -0.53 >More info -0.10 >More info Leaves-WT-LD leaf Original data GEO bulk
102 anti-sense for AtAOX1a -0.11 >More info -0.52 >More info WT Original data GEO bulk
103 Shoot submergence 7h -0.62 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
104 low CO2 + dark -0.53 >More info -0.09 >More info normal CO2 + light Original data GEO bulk
105 sid2-2 9 hpi A. brassicicola -0.54 >More info -0.08 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
106 250uM KNO3 20min shoots 0.05 >More info -0.67 >More info 250uM KCL 20min shoots shoots Original data GEO bulk
107 CT101 ozone -0.51 >More info -0.10 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
108 vtc2-1 0.06 >More info 0.53 >More info Col-0 whole plant Original data GEO bulk
109 IAA7mII over-expressor IAA Treated -0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
110 opr3 OPDA 0.5 h 0.02 >More info -0.61 >More info opr3 0 h Original data GEO bulk
111 Pst-DC3000(hrpA)-4hpi 0.00 >More info 0.59 >More info Pst-DC3000-4hpi Original data GEO bulk
112 GA 120min 0.02 >More info 0.56 >More info CON120 GA 120 min. root tips Original data GEO bulk
113 B5 +AA 0.01 >More info 0.57 >More info B5 -AA B5 media and treated with AA Original data
114 gun1gun5 Norflurazon 0.53 >More info 0.04 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
115 edr1 36 h powdery mildew -0.50 >More info -0.07 >More info Col-0 36 h powdery mildew Original data GEO bulk
116 Split KNO3 roots - 2hours -0.07 >More info -0.50 >More info Split KCl roots - 2hours 5mM KNO3 on ONE side for 2 hours roots Original data GEO bulk
117 Aerobic prt6 -0.59 >More info 0.02 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
118 nbp35-3/- -0.51 >More info -0.05 >More info WT whole seedling Original data GEO bulk
119 Col-0 INA 6d -0.54 >More info -0.02 >More info Col-0 MOCK 6d Original data GEO bulk
120 rosettes myoox drought 0.02 >More info 0.53 >More info rosettes myoox watered Original data GEO bulk
121 CCA1-ox 6am non-polysomal 0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
122 cat2-2; harvested 8h continiously maintained in
high CO2;
0.61 >More info -0.07 >More info WT; harvested 8h continiously maintained in high
CO2;
2 whole rosettes Original data
123 mkk1/mkk2 control rep -0.50 >More info -0.04 >More info Col-0 Time 0 rep Original data GEO bulk
124 IMI 4mM -0.52 >More info -0.02 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
125 EBE-XVE +estradiol 0.01 >More info -0.55 >More info WT-Col-0 +estradiol shoot Original data GEO bulk
126 agb1 gpa1 -ABA GC 0.57 >More info -0.03 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
127 rosettes WT drought 0.02 >More info 0.51 >More info rosettes WT watered Original data GEO bulk
128 WT cold -0.50 >More info -0.02 >More info WT warm 3 week cold entire aerial part Original data GEO bulk
129 ckh2 CK25 -0.58 >More info 0.07 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
130 mkk2 24h BTH rep -0.51 >More info 0.00 >More info Col-0 24h BTH rep Original data GEO bulk
131 wavy -0.50 >More info -0.01 >More info WT Original data GEO bulk
132 Shoot apex vegetative &Young leaves 0.04 >More info -0.55 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
133 over-tAPX 0.16 >More info -0.67 >More info WT Col Original data GEO bulk
134 Emwa1 inoculated psk 3 dpi 0.05 >More info -0.56 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
135 WT Bc inoculation 14h -0.56 >More info 0.06 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
136 endosperm ABA 0.63 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
137 sfr2 control 0.53 >More info -0.03 >More info WT control All aerial tissue Original data GEO bulk
138 Shoot apex vegetative 0.04 >More info -0.53 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
139 seed germinating in countinuous light 24h SL -0.18 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
140 root protoplasts 40 mM NaCl -0.04 >More info 0.53 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
141 pGL1::GL1-GR Dex 4 hours 0.53 >More info -0.05 >More info pGL1::GL1-GR mock 4 hours Original data GEO bulk
142 Col-0 low oxygen -0.51 >More info 0.03 >More info Col-0 Original data GEO bulk
143 Col-0 9 hpi A. brassicicola -0.51 >More info 0.04 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
144 EL (leaves 1-2) 14DAS 0.08 >More info -0.55 >More info Control for tissue data Original data GEO bulk
145 lec1-1 Mature Green Seed 0.03 >More info -0.50 >More info Control for tissue data Original data GEO bulk
146 tcp13/+ tcp14/+ 0.21 >More info -0.67 >More info WT inflorescences Original data GEO bulk
147 wrky33 Bc inoculation 14h -0.52 >More info 0.07 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
148 Cotyledons 0.09 >More info -0.53 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
149 Apex 5DAS 0.09 >More info -0.53 >More info Control for tissue data Original data GEO bulk
150 Apex 14DAS 0.10 >More info -0.53 >More info Control for tissue data Original data GEO bulk
151 erf104-ko Flg22 4h -0.63 >More info 0.20 >More info erf104-ko H2O 4h Original data GEO bulk
152 Leaf 0.07 >More info -0.50 >More info Control for tissue data leaf Original data GEO bulk
153 atgsnor1-1 0.17 >More info -0.60 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
154 35S:miR396 -0.11 >More info 0.52 >More info WT 0 days-old seedlings. Original data GEO bulk
155 Laer pretreat GA Flg22 1h -0.30 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
156 WT cotyledons 0.16 >More info -0.57 >More info Control for tissue data cotyledons Original data
157 Ambient CO2 leaf primordia 0.15 >More info -0.54 >More info Control for tissue data leaf primordia Original data
158 Distal half (leaf7) 0.12 >More info -0.50 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
159 Expanding leaf 0.16 >More info -0.54 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
160 pskr1-5 0.16 >More info -0.54 >More info wild type Cotyledons Original data GEO bulk
161 light 0.55 >More info -0.18 >More info dark light seedling Original data GEO bulk
162 Petiol (leaf7) 0.15 >More info -0.52 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
163 Rosette leaf No2 0.15 >More info -0.51 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
164 Proximalhalf (leaf7) 0.15 >More info -0.50 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
165 col-5 DC3000 12h -0.60 >More info 0.26 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
166 rosette Dark Wounded -0.16 >More info 0.50 >More info rosette Dark Control Original data GEO bulk
167 Ambient CO2 expanding leaf 0.22 >More info -0.55 >More info Control for tissue data expanding leaf Original data
168 Pedicels stage15 0.17 >More info -0.50 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
169 sid2 0.17 >More info -0.50 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
170 Cor hrpS 10h -0.54 >More info 0.22 >More info Mock 10h Cor hrpS Original data GEO bulk
171 Rosette leaf No12 0.20 >More info -0.52 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
172 Bur-0-30min IAA -0.20 >More info 0.50 >More info Bur-0h IAA whole plant Original data GEO bulk
173 Ambient CO2 fully expanded leaf 0.22 >More info -0.51 >More info Control for tissue data fully expanded leaf Original data
174 Leafminer damaged seedlings -0.30 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
175 ML (Mature leaves) 35DAS 0.24 >More info -0.50 >More info Control for tissue data Original data GEO bulk
176 Full C2 T2 -0.31 >More info 0.56 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
177 Col0-PsmES4326-24hpi -0.38 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
178 leaf 0.31 >More info -0.52 >More info Control for tissue data leaf Original data GEO bulk
179 Col BTH -0.47 >More info 0.67 >More info Col rosettes Original data GEO bulk