4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on phyB mutant 16C 10hrs
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "phyB mutant 16C 10hrs"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyB mutant 16C 10hrs		 Correlation to
phyB mutant 16C 10hrs		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyB mutant 16C 10hrs 1.00 >More info 1.00 >More info 16C 10h whole plant excluding roots Original data GEO bulk
2 60m light 0.64 >More info 0.71 >More info before light whole seedlings Original data GEO bulk
3 shl-2 Pool -0.58 >More info -0.72 >More info Ler Pool seedling Original data GEO bulk
4 Night Time Treatment 0.57 >More info 0.72 >More info Night Time Control 1hr white light pulse aerial rosette Original data
5 Col(gl) leaf 100mM NaCl -0.64 >More info -0.62 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
6 Col(gl) 100mM NaCl -0.64 >More info -0.62 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
7 Atss3 Light4 0.47 >More info 0.72 >More info Atss3 Dark0.5 Original data GEO bulk
8 30m light 0.49 >More info 0.67 >More info before light whole seedlings Original data GEO bulk
9 Col(gl) leaf 0mM NaCl -0.37 >More info -0.77 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
10 Col(gl) 0mM NaCl -0.37 >More info -0.77 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
11 phyB mutant 22C 10hrs 0.34 >More info 0.77 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
12 petiole in D -0.52 >More info -0.59 >More info petiole in WL petioles Original data GEO bulk
13 1 h Light Total RNA 0.47 >More info 0.64 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
14 Mutant lwd1_lwd2 -0.26 >More info -0.82 >More info Wildtype for phy mutants Original data GEO bulk
15 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 -0.26 >More info -0.82 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
16 24h volatiles Sm. R3089 -0.45 >More info -0.62 >More info 24h untreated whole seedling Original data GEO bulk
17 leaf blade in D -0.48 >More info -0.59 >More info leaf blade in WL leaf blades Original data GEO bulk
18 Col-0 mbs1-1 HL 3h 0.76 >More info 0.30 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
19 M6PR transgenic leaf 0mM NaCl -0.31 >More info -0.75 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
20 Heat shock optimum 0.38 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
21 ape2 low light -0.48 >More info -0.55 >More info Ws-2 low light Original data GEO bulk
22 petiole in FRD -0.55 >More info -0.46 >More info petiole in WL petioles Original data GEO bulk
23 12h volatiles Sm. R3089 -0.45 >More info -0.56 >More info 12h untreated whole seedling Original data GEO bulk
24 ebs Pool -0.49 >More info -0.51 >More info Ler Pool seedling Original data GEO bulk
25 Pseudomonas -0.26 >More info -0.73 >More info Control pseudomonas treated whole seedling Original data GEO bulk
26 sid2-2 24hpi A. brassicicola 0.29 >More info 0.69 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
27 IXB induced -0.70 >More info -0.25 >More info Methanol IXB Suspension cells Original data GEO bulk
28 Atss3 Light1 0.19 >More info 0.75 >More info Atss3 Dark0.5 Original data GEO bulk
29 M6PR transgenic 0mM NaCl -0.31 >More info -0.63 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
30 MIL4 ox -0.34 >More info -0.55 >More info Col Original data GEO bulk
31 bHLH122 ox 0.51 >More info 0.38 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
32 ein2-1 24hpi A. brassicicola 0.18 >More info 0.70 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
33 Col-0 RNAi-MBS2/mbs1-1 HL 3h 0.55 >More info 0.32 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
34 rGRF -0.31 >More info -0.56 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
35 agb1 -ABA LF -0.52 >More info -0.35 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
36 Homozygous-AtcesA6 0.24 >More info 0.62 >More info Heterozygous-AtcesA6 rosette Original data GEO bulk
37 camta1-2 -0.34 >More info -0.51 >More info Col-0-WT Original data GEO bulk
38 PRR5-VP 12h light on 0.29 >More info 0.55 >More info WT 12h light on whole plant Original data GEO bulk
39 low CO2 + dark -0.54 >More info -0.29 >More info normal CO2 + light Original data GEO bulk
40 phyB mutant 22C 4hrs 0.32 >More info 0.50 >More info L22-4hrs whole plant excluding roots Original data GEO bulk
41 dde2-2 24hpi A. brassicicola 0.11 >More info 0.70 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
42 OsSAP11 expressing 0.26 >More info 0.54 >More info WT seedlings Original data GEO bulk
43 04h Col-0 0.29 >More info 0.51 >More info 00h Col-0 Original data GEO bulk
44 seedling 24h after Gamma atm-1 0.28 >More info 0.52 >More info seedling day 2 unirradiated atm-1 24h Original data
45 pmr5 pmr6 -0.59 >More info -0.19 >More info Col-0 Original data GEO bulk
46 mil4 sid2 -0.15 >More info -0.63 >More info Col rosettes Original data GEO bulk
47 pap1-D -0.20 >More info -0.58 >More info Col-0 aerial part Original data
48 pft1 23C 0.65 >More info 0.12 >More info WT 23C seedling Original data GEO bulk
49 Col-0 flu HL 3h 0.54 >More info 0.23 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
50 Red Light 4 h -0.13 >More info -0.64 >More info White Light 4 h Original data Light treatments
51 OsRLCK253 expressing 0.16 >More info 0.61 >More info WT seedlings Original data GEO bulk
52 IAA7mII over-expressor IAA Treated 0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
53 camta3-1 -0.23 >More info -0.52 >More info WT Original data GEO bulk
54 WOX1-1 -0.09 >More info -0.66 >More info Col-0 aerial part Original data
55 toc1-1-89hr 0.10 >More info 0.64 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
56 ACC 1 h -0.58 >More info -0.15 >More info Mock 1 h Original data Basic hormone treatment of seedlings
57 INA -0.20 >More info -0.53 >More info CK INA seedling Original data
58 toc1-1-77hr -0.14 >More info -0.58 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
59 Shoot dark control 7h -0.22 >More info -0.50 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
60 bri1-116 -0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
61 pap1-D/tt4 -0.07 >More info -0.65 >More info Col-0 aerial part Original data
62 short 12-degree- 0.16 >More info 0.55 >More info control short Original data GEO bulk
63 Light 3day hml 0.21 >More info 0.50 >More info 0h hml Original data
64 seedling 12h after HZE atm-1 -0.07 >More info -0.63 >More info seedling day 1 unirradiated atm-1 12h Original data
65 Heat 6h 0.61 >More info 0.08 >More info At mock rosettes - 5 leaves stage Original data
66 ACC 0.5 h -0.62 >More info -0.07 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
67 cs26 short-day 0.52 >More info 0.16 >More info Leaves-WT-SD leaf Original data GEO bulk
68 short 17-degree- 0.12 >More info 0.56 >More info control short Original data GEO bulk
69 tt4 -0.04 >More info -0.64 >More info Col-0 aerial part Original data
70 MYB12OX/tt4 -0.03 >More info -0.65 >More info Col-0 aerial part Original data
71 WT+H2O2 -0.50 >More info -0.18 >More info WT H2O2 Original data GEO bulk
72 Mutant siz1-3 -0.51 >More info -0.16 >More info Col-0 Original data GEO bulk
73 siz1-3 control -0.51 >More info -0.16 >More info Col-0 control Original data GEO bulk
74 Heat 6h-recover 48h -0.55 >More info -0.12 >More info Heat 6h rosettes - 5 leaves stage Original data
75 0h hml -0.15 >More info -0.52 >More info 0h wt Original data
76 CCA1-ox 6am non-polysomal 0.16 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
77 shoot hypoxia pRBCS -0.60 >More info -0.07 >More info shoot hypoxia total Original data GEO bulk
78 Day Time Treatment 0.06 >More info 0.61 >More info Day Time Control 1hr white light pulse aerial rosette Original data
79 sid2 -0.08 >More info -0.58 >More info Col rosettes Original data GEO bulk
80 pollinated pop2-1 flowers 0.54 >More info 0.11 >More info pollinated WT flowers flowers Original data GEO bulk
81 mil4 -0.07 >More info -0.57 >More info Col rosettes Original data GEO bulk
82 Cd 24h root 0.01 >More info 0.62 >More info WT-Untreated Shoot Original data GEO bulk
83 shoot hypoxia p35S -0.55 >More info -0.04 >More info shoot hypoxia total Original data GEO bulk
84 seed germinating in countinuous light 24h SL -0.09 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
85 Root sol2 0.55 >More info 0.02 >More info Root wt Original data GEO bulk
86 Cd 18h root 0.02 >More info 0.55 >More info WT-Untreated Root Original data GEO bulk
87 ANOXIA -0.00 >More info -0.57 >More info ANOXIA+SUCROSE Original data GEO bulk
88 Light 3day ivd -0.06 >More info -0.50 >More info 0h ivd Original data
89 siliques AtHb1 control 0.04 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
90 Col-0 35S:MBS1 HL 3h 0.52 >More info 0.03 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
91 Homozygous-AtcesA4 -0.07 >More info 0.62 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
92 chalazal endosperm pre-globular 0.55 >More info -0.01 >More info whole seed sections pre-globular Original data GEO bulk
93 GV3101 3hpi -0.03 >More info -0.50 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
94 6h volatiles Sm. R3089 0.14 >More info -0.66 >More info 6h untreated whole seedling Original data GEO bulk
95 1 h Light IP RNA -0.00 >More info 0.51 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
96 opr3 OPDA 0.5 h 0.04 >More info -0.54 >More info opr3 0 h Original data GEO bulk
97 Laer pretreat GA Flg22 1h -0.22 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
98 oas-a1.1 root -0.01 >More info 0.50 >More info WT-Untreated Root Original data GEO bulk
99 P.syringae vir 4 h (leaf) 0.53 >More info -0.05 >More info Mock 4 h (leaf) Original data Elicitor treatments
100 rdr6-11 -0.54 >More info 0.06 >More info Col-0 aerial tissue Original data
101 Col BTH -0.19 >More info 0.67 >More info Col rosettes Original data GEO bulk
102 ein2-1 9 hpi A. brassicicola -0.51 >More info 0.04 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
103 hsfa2 KO heat shock 0.52 >More info -0.05 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
104 WT polysome 0.51 >More info -0.04 >More info WT non-polysome Original data GEO bulk
105 mkk2 control rep 0.03 >More info -0.50 >More info Col-0 Time 0 rep Original data GEO bulk
106 20h Col-0 0.17 >More info -0.64 >More info 00h Col-0 Original data GEO bulk
107 Leafminer damaged seedlings -0.10 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
108 16h Col-0 0.15 >More info -0.61 >More info 00h Col-0 Original data GEO bulk
109 pip3 At2g19270 RNAi 32 -0.05 >More info 0.50 >More info Nd-1 whole plant Original data GEO bulk
110 WT Na2S -0.06 >More info 0.51 >More info WT water Na2S leaf Original data GEO bulk
111 Col0-PsmES4326-24hpi -0.16 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
112 Mutant sav3-2 (SH) 0.06 >More info -0.50 >More info Col-0 (SH) Original data GEO bulk
113 sav3-2 shade 0.06 >More info -0.50 >More info Col-0 shade seedlings Original data GEO bulk
114 rosette Dark Wounded 0.50 >More info -0.08 >More info rosette Dark Control Original data GEO bulk
115 WT (Col-0) inflorescence moderate drought day 5 -0.10 >More info 0.50 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
116 Total RNA 35S:HF-RPL18 cold -0.52 >More info 0.14 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
117 AsAKiin11 T1 -0.52 >More info 0.16 >More info C2 C2del and (As)AKiin11 control T1 one day post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
118 2hr continuous KNO3 ECR cell 0.53 >More info -0.17 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
119 Shoot apex inflorescence (after bolting) -0.30 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
120 pGL1::GL1-GR Dex 24hours 0.15 >More info -0.50 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
121 SOS1 0mM NaCl 0.17 >More info -0.51 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
122 seedling 12h after Gamma atm-1 0.21 >More info -0.50 >More info seedling day 1 unirradiated atm-1 12h Original data
123 rdr1-1 -0.26 >More info 0.54 >More info Col-0 Original data GEO bulk
124 ABA 1 h -0.25 >More info 0.52 >More info Mock 1 h Original data Basic hormone treatment of seedlings
125 Col leaf 100mM NaCl 0.26 >More info -0.50 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
126 Col leaf 100mM NaCl 0.26 >More info -0.50 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
127 Col 100mM NaCl 0.26 >More info -0.50 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
128 Salicylic Acid 3 h 0.38 >More info -0.61 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
129 iron minus 24h 0.65 >More info -0.43 >More info iron +24h root Original data GEO bulk