4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyABDE Dark
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List of experiments correlated with "phyABDE Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyABDE Dark		 Correlation to
phyABDE Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyABDE Dark 1.00 >More info 1.00 >More info WT Dark Dark whole seedling Original data GEO bulk
2 phyABCDE Dark 0.88 >More info 0.86 >More info WT Dark Dark whole seedling Original data GEO bulk
3 Ws seedlings 0.73 >More info 0.66 >More info ged1 seedlings Original data GEO bulk
4 ged1 seedlings -0.73 >More info -0.66 >More info Ws seedlings Original data GEO bulk
5 ABA control 0.64 >More info 0.73 >More info No ABA control Original data GEO bulk
6 ahg1-1 0.64 >More info 0.72 >More info ABA control Original data GEO bulk
7 gul2-1 mutant 0.74 >More info 0.62 >More info WT 7 day-old whole seedlings Original data
8 clf-28 swn-7 0.70 >More info 0.63 >More info Col whole plant Original data GEO bulk
9 gul2-1 bri1-5 mutant 0.75 >More info 0.57 >More info WT 7 day-old whole seedlings Original data
10 etiolated atbzip16 0.64 >More info 0.64 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
11 GA4 3 h (ga1 seed) 0.69 >More info 0.58 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
12 piffq 2d WL 0.60 >More info 0.67 >More info WT 2d WL whole seedling Original data GEO bulk
13 embryo ABA 0.64 >More info 0.57 >More info embryo-control ABA embryo Original data GEO bulk
14 Imbibed 24 h ABA 30uM (seed) 0.64 >More info 0.55 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
15 embryo paclobutrazol 0.66 >More info 0.52 >More info embryo-control paclobutrazol embryo Original data GEO bulk
16 MPK6 ox Shoot Hypoxia -0.55 >More info -0.59 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
17 rsa1 salt 12 h 0.57 >More info 0.53 >More info WT salt 12 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
18 eto1-4 +303 -0.67 >More info -0.42 >More info eto1-4 whole seedling Original data GEO bulk
19 2d dark-grown pif1pif3pif4pif5 (pifq) mutant -0.63 >More info -0.45 >More info 2d dark-grown WT seedling Original data GEO bulk
20 csn4-1 dark 0.64 >More info 0.44 >More info WT light Original data GEO bulk
21 dsr1 -0.44 >More info -0.62 >More info WT mock Whole seedling Original data GEO bulk
22 red illumination +lincomycin 0.37 >More info 0.66 >More info red illumination -lincomycin Original data GEO bulk
23 fri-flc 0.50 >More info 0.52 >More info WT Original data GEO bulk
24 60m light 0.56 >More info 0.46 >More info before light whole seedlings Original data GEO bulk
25 FHY3p dark+DEX -0.56 >More info -0.46 >More info FHY3p dark+mock Original data GEO bulk
26 pab polysome 0.46 >More info 0.56 >More info WT polysome seedling shoot/aerial seedling Original data
27 siliques AtHb1 control 0.49 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
28 ACN1-2 Sucrose -0.51 >More info -0.49 >More info Col-7 Sucrose Original data GEO bulk
29 cca1-lhy 60m light -0.56 >More info -0.43 >More info 60m light whole seedlings Original data GEO bulk
30 phyABCDE Rc50 -0.60 >More info -0.39 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
31 bri1-116 0.26 >More info 0.73 >More info Col seedling Original data GEO bulk
32 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		-0.58 >More info -0.40 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
33 mdh 0.46 >More info 0.51 >More info Col Original data GEO bulk
34 eto1-4 +370 -0.64 >More info -0.31 >More info eto1-4 whole seedling Original data GEO bulk
35 piffq FR 1h 0.50 >More info 0.44 >More info WT FR 1h whole seedling Original data GEO bulk
36 24h SL WT -0.58 >More info -0.36 >More info 0 h WT seed Original data
37 Heat 0.51 >More info 0.43 >More info Control 90 minutes at 38°C. Original data GEO bulk
38 piffq 3d WL 0.50 >More info 0.44 >More info WT 3d WL whole seedling Original data GEO bulk
39 24h SL Attim 17-1 1 -0.56 >More info -0.35 >More info 0 h Attim 17-1 1 seed Original data
40 eto1-4 + AVG -0.65 >More info -0.26 >More info eto1-4 whole seedling Original data GEO bulk
41 ACN1-2 -0.34 >More info -0.57 >More info col-7 Original data GEO bulk
42 eto1-4 0.69 >More info 0.21 >More info Col-0 whole seedling Original data GEO bulk
43 csn5 (csn5a-2 csn5b) light 0.52 >More info 0.37 >More info WT light Original data GEO bulk
44 csn5 (csn5a-2 csn5b) dark 0.51 >More info 0.37 >More info WT dark Original data GEO bulk
45 seed germinating in countinuous light 1 h SL 0.60 >More info 0.28 >More info Control for tissue data seed Original data GEO bulk
46 5-Triiodobenzoic acid3 h 0.30 >More info 0.57 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
47 vtc2 day 7 induction -0.54 >More info -0.32 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
48 AtGATA2ox 0.53 >More info 0.33 >More info Col seedling Original data GEO bulk
49 seed during stratification 48 h S 0.60 >More info 0.26 >More info Control for tissue data seed Original data GEO bulk
50 hsfa1 quadruple mutant heat shock 0.51 >More info 0.35 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
51 seedling h S Exp 0.17 >More info 0.69 >More info seedling -S Exp seedling Original data
52 35S-MIF1 light grown 0.32 >More info 0.53 >More info Light-grown WT control Original data GEO bulk
53 bbx24 in Simulated Shade -0.50 >More info -0.35 >More info WT in simulated shade shade seedling Original data
54 cca1-lhy 15m light -0.59 >More info -0.26 >More info 15m light whole seedlings Original data GEO bulk
55 FarRed Light 45min -0.14 >More info -0.71 >More info White Light 45min Original data Light treatments
56 seed germinating in countinuous light 6 h SL 0.55 >More info 0.29 >More info Control for tissue data seed Original data GEO bulk
57 eto1-4 +393 -0.70 >More info -0.14 >More info eto1-4 whole seedling Original data GEO bulk
58 15m light 0.55 >More info 0.28 >More info before light whole seedlings Original data GEO bulk
59 ABI3GR +DEX +CHX 0.33 >More info 0.50 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
60 Dex-rga(delta17) 4h GA4 0.33 >More info 0.50 >More info Vector 4h GA4 shoots Original data GEO bulk
61 endosperm paclobutrazol 0.61 >More info 0.22 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
62 dry seed 0 h 0.62 >More info 0.21 >More info Control for tissue data seed Original data GEO bulk
63 seed during stratification 1 h S 0.62 >More info 0.21 >More info Control for tissue data seed Original data GEO bulk
64 mARF10 0.25 >More info 0.58 >More info Col-0 Original data GEO bulk
65 seed during stratification 12 h S 0.62 >More info 0.20 >More info Control for tissue data seed Original data GEO bulk
66 seed freshly harvested H 0.62 >More info 0.20 >More info Control for tissue data seed Original data GEO bulk
67 35S-MIF1 dark grown 0.61 >More info 0.21 >More info Dark-grown WT control Original data GEO bulk
68 6h +Pi -0.52 >More info -0.29 >More info 6h -Pi root Original data GEO bulk
69 seed germinating in countinuous light 24h SL 0.13 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
70 IAA7mII over-expressor IAA Treated 0.11 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
71 shoot control pSultr2:2 -0.52 >More info -0.25 >More info shoot control total Original data GEO bulk
72 ARF10 -0.65 >More info -0.11 >More info Col-0 Original data GEO bulk
73 Col-0 red light -0.54 >More info -0.21 >More info Col-0 dark Original data GEO bulk
74 short 12-degree- 0.16 >More info 0.59 >More info control short Original data GEO bulk
75 pkl Mutant Uniconazole 0.51 >More info 0.23 >More info pkl Mutant mock Original data GEO bulk
76 WT(Ler) Rc50 0.50 >More info 0.24 >More info WT(Ler) Dark Original data GEO bulk
77 hsfa1 quadruple mutant 0.56 >More info 0.16 >More info WT (Col-0) whole seedling Original data GEO bulk
78 ahg3-1 0.53 >More info 0.19 >More info ABA control Original data GEO bulk
79 Col dryseed 0.58 >More info 0.14 >More info Control for tissue data dry seeds Original data
80 C24-30min IAA -0.50 >More info -0.22 >More info C24-0h IAA whole plant Original data GEO bulk
81 rosette Dark Wounded 0.15 >More info 0.57 >More info rosette Dark Control Original data GEO bulk
82 Col0-PsmES4326-24hpi 0.10 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
83 ATR1 OE -0.17 >More info -0.53 >More info WT for ATR1/MYB51 Original data GEO bulk
84 Red/FR Light45min 0.05 >More info 0.64 >More info FarRed Light 45min Original data Light treatments
85 35S::Zat12 0.54 >More info 0.14 >More info WT Original data GEO bulk
86 Laer pretreat GA Flg22 1h -0.03 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
87 lec1-1 Post-Mature Green Seed 0.56 >More info 0.11 >More info Control for tissue data Original data GEO bulk
88 Red Light 45min -0.11 >More info -0.56 >More info White Light 45min Original data Light treatments
89 OE-HRA1 2HS  0.54 >More info 0.12 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
90 WT(Ler) Rc15 0.52 >More info 0.14 >More info WT(Ler) Dark Original data GEO bulk
91 Seeds stage8 w/o siliques 0.57 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
92 Blue Light 4 h 0.10 >More info 0.55 >More info White Light 4 h Original data Light treatments
93 brat1nrpe1 0.08 >More info 0.56 >More info WT Original data
94 Col BTH -0.03 >More info 0.67 >More info Col rosettes Original data GEO bulk
95 lec1-1 Mature Green Seed 0.51 >More info 0.12 >More info Control for tissue data Original data GEO bulk
96 eif3h polysome 0.57 >More info 0.06 >More info WT polysome Original data GEO bulk
97 20d after anthesis 0.55 >More info 0.07 >More info 10d after anthesis senescing pod tissues of 20 days after anthesis Original data GEO bulk
98 Leafminer damaged seedlings 0.06 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
99 seedling -S Exp -0.01 >More info -0.61 >More info seedling FN Exp seedling Original data
100 Stem tissue 2 days NAA 0.54 >More info 0.07 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
101 Heat shock optimum -0.04 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
102 NJ15 -0.01 >More info 0.62 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
103 irradiated leaf (WT 5d) 0.06 >More info 0.54 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
104 Paclobutrazol 3 h -0.07 >More info -0.52 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
105 short 17-degree- 0.07 >More info 0.52 >More info control short Original data GEO bulk
106 WT Red light 18h -0.51 >More info -0.08 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
107 tcp14 0.00 >More info -0.58 >More info WT inflorescences Original data GEO bulk
108 eif3h 0.55 >More info 0.02 >More info WT Original data GEO bulk
109 TNT-seedlings 0.00 >More info 0.57 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
110 eif3h non-polysome 0.55 >More info 0.01 >More info WT non-polysome Original data GEO bulk
111 Apex mir-3TCP 14DAS 0.02 >More info 0.54 >More info Apex Col 14DAS Original data GEO bulk
112 gun4-1 0.53 >More info 0.02 >More info WT Col-0 seedling Original data GEO bulk
113 35S::PI ap3-3 35S::AP-GR +DEX -0.12 >More info 0.66 >More info 0hr DEX Original data GEO bulk
114 21h-DC3000 avrRpm1 0.03 >More info 0.50 >More info 21h-DC3000 leaves Original data GEO bulk
115 low CO2 + dark -0.01 >More info -0.50 >More info normal CO2 + light Original data GEO bulk
116 endosperm ABA 0.63 >More info -0.13 >More info endosperm-control ABA endosperm Original data GEO bulk
117 Shoot apex inflorescence (after bolting) -0.17 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
118 Imbibed 24 h ABA 3uM (seed) 0.57 >More info -0.11 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
119 phyABDE 4-day dark- 2 hours Rc50 0.61 >More info -0.17 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
120 CCA1-ox 6am non-polysomal -0.10 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
121 phyABDE Rc50 -0.58 >More info 0.18 >More info phyABDE Dark red light whole seedling Original data GEO bulk