4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on lec1-1 Mature Green Seed
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Score Experiment Correlation from
lec1-1 Mature Green Seed		 Correlation to
lec1-1 Mature Green Seed		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 lec1-1 Mature Green Seed 1.00 >More info 1.00 >More info Control for tissue data Original data GEO bulk
2 lec1-1 Post-Mature Green Seed 0.96 >More info 0.96 >More info Control for tissue data Original data GEO bulk
3 seed germinating in countinuous light 48 h SL 0.91 >More info 0.93 >More info Control for tissue data seed Original data GEO bulk
4 lec1-1 24h post-fertilization Seed 0.91 >More info 0.92 >More info Control for tissue data Original data GEO bulk
5 seed germinating in countinuous light 6 h SL 0.91 >More info 0.92 >More info Control for tissue data seed Original data GEO bulk
6 Carpels stage15 0.91 >More info 0.92 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
7 Shoot apex vegetative &Young leaves 0.91 >More info 0.92 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
8 lec1-1 Cotyledon Stage Seed 0.91 >More info 0.92 >More info Control for tissue data Original data GEO bulk
9 Shoot apex vegetative 0.91 >More info 0.92 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
10 Shoot apex transition (before bolting) 0.91 >More info 0.92 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
11 Regenerating Stump Root Tip Cut 130 mm andn Recut
22 hrs Taking 70 mm of Stump (4dpg)		 0.90 >More info 0.92 >More info Control for tissue data Original data GEO bulk
12 seed germinating in countinuous light 12 h SL 0.91 >More info 0.91 >More info Control for tissue data seed Original data GEO bulk
13 Seeds stage8 w/o siliques 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
14 seed germinating in countinuous light 1 h SL 0.91 >More info 0.90 >More info Control for tissue data seed Original data GEO bulk
15 lec1-1 Globular Stage Seed 0.90 >More info 0.91 >More info Control for tissue data Original data GEO bulk
16 ovule 0.91 >More info 0.90 >More info Control for tissue data ovule Original data GEO bulk
17 Rosette leaf No12 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
18 Hypocotyl 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
19 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (4dpg)		 0.90 >More info 0.91 >More info Control for tissue data Original data GEO bulk
20 Root from tip to 130 mm proximal to tip (cut
4dpg)		 0.90 >More info 0.91 >More info Control for tissue data Original data GEO bulk
21 WT cotyledons 0.91 >More info 0.90 >More info Control for tissue data cotyledons Original data
22 Flower (stage12) 0.90 >More info 0.91 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
23 unpollinated pistil 0.91 >More info 0.90 >More info Control for tissue data pistil Original data GEO bulk
24 Regenerating Stump Root Tip Cut 130 mm andn Recut
13 hrs Taking 70 mm of Stump (4dpg)		 0.89 >More info 0.91 >More info Control for tissue data Original data GEO bulk
25 Apex 5DAS 0.90 >More info 0.90 >More info Control for tissue data Original data GEO bulk
26 Ambient CO2 leaf primordia 0.90 >More info 0.90 >More info Control for tissue data leaf primordia Original data
27 Callus 0.90 >More info 0.90 >More info Control for tissue data callus Original data GEO bulk
28 Inflorescences ler 0.89 >More info 0.91 >More info Control for tissue data inflorescences Original data GEO bulk
29 lateral nectary stage 11-12 0.90 >More info 0.90 >More info Control for tissue data lateral nectaries Original data GEO bulk
30 KAN1 0.90 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
31 seed during stratification 48 h S 0.90 >More info 0.90 >More info Control for tissue data seed Original data GEO bulk
32 Pedicels stage15 0.90 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
33 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)		 0.89 >More info 0.91 >More info Control for tissue data Original data GEO bulk
34 Seeds stage3 with siliques 0.90 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
35 seedling 0.90 >More info 0.90 >More info Control for tissue data seedling Original data GEO bulk
36 Apex 14DAS 0.90 >More info 0.90 >More info Control for tissue data Original data GEO bulk
37 Root from tip to 130 mm proximal to tip (cut
8dpg)		 0.89 >More info 0.91 >More info Control for tissue data Original data GEO bulk
38 Regenerating Stump Root Tip Cut 130 mm andn Recut
5 hrs Taking 70 mm of Stump (4dpg)		 0.89 >More info 0.91 >More info Control for tissue data Original data GEO bulk
39 Bud 0.89 >More info 0.90 >More info Control for tissue data pollen grains and tubes Original data
40 Petiol (leaf7) 0.90 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
41 flower-buds 0.89 >More info 0.90 >More info Control for tissue data Original data GEO bulk
42 Mature roots 0.89 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
43 Expanding leaf 0.90 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
44 silique 0.89 >More info 0.90 >More info Control for tissue data silique Original data GEO bulk
45 Nuclei proembryo 0.89 >More info 0.90 >More info Control for tissue data proembryo Original data
46 Cells whole embryo 0.89 >More info 0.90 >More info Control for tissue data whole embryo Original data
47 Section Root from70 mm to 340 mm harvested
immediately		 0.89 >More info 0.90 >More info Control for tissue data Original data GEO bulk
48 siliques 0.89 >More info 0.90 >More info Control for tissue data Original data GEO bulk
49 flowers 0.89 >More info 0.90 >More info Control for tissue data Original data GEO bulk
50 torpedo-basal 0.89 >More info 0.90 >More info Control for tissue data torpedo embryo basal tissue Original data GEO bulk
51 Stem 1st node 0.89 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
52 Flowers stage15 0.89 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
53 in vivo pollen tube 0.89 >More info 0.89 >More info Control for tissue data pollen tube Original data GEO bulk
54 EL (leaves 1-2) 14DAS 0.89 >More info 0.89 >More info Control for tissue data Original data GEO bulk
55 Col dryseed 0.89 >More info 0.89 >More info Control for tissue data dry seeds Original data
56 Atape2 low light 0.89 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
57 HDG4 0.89 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
58 Anther 0.89 >More info 0.89 >More info Control for tissue data anther Original data
59 Ambient CO2 expanding leaf 0.89 >More info 0.89 >More info Control for tissue data expanding leaf Original data
60 Cotyledons 0.89 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
61 Leaf 0.89 >More info 0.88 >More info Control for tissue data leaf Original data GEO bulk
62 Nuclei suspensor 0.88 >More info 0.89 >More info Control for tissue data suspensor Original data
63 LAS 0.89 >More info 0.88 >More info Control for tissue data shoot apical meristem Original data GEO bulk
64 median nectary stage 14-15 0.88 >More info 0.89 >More info Control for tissue data median nectaries Original data GEO bulk
65 Stem 2ndinternode 0.89 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
66 Proximalhalf (leaf7) 0.89 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
67 flower 0.89 >More info 0.88 >More info Control for tissue data flower Original data GEO bulk
68 dry seed 0 h 0.89 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
69 seed freshly harvested H 0.89 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
70 HMG 0.89 >More info 0.88 >More info Control for tissue data shoot apical meristem Original data GEO bulk
71 S17 0.89 >More info 0.88 >More info Control for tissue data shoot apical meristem Original data GEO bulk
72 Ambient CO2 fully expanded leaf 0.89 >More info 0.88 >More info Control for tissue data fully expanded leaf Original data
73 seed during stratification 1 h S 0.89 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
74 Petals stage15 0.88 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
75 cortex 0.87 >More info 0.89 >More info Control for tissue data cortex Original data GEO bulk
76 Distal half (leaf7) 0.89 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
77 leaf 0.89 >More info 0.87 >More info Control for tissue data leaf Original data GEO bulk
78 lateral nectary stage 14-15 0.88 >More info 0.88 >More info Control for tissue data lateral nectaries Original data GEO bulk
79 seed during stratification 12 h S 0.89 >More info 0.87 >More info Control for tissue data seed Original data GEO bulk
80 Rosette leaf No2 0.89 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
81 heart-stage-root 0.87 >More info 0.89 >More info Control for tissue data Original data GEO bulk
82 Senescing leaf 0.88 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
83 AtHB8 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
84 Cauline leaves 0.88 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
85 ML (Mature leaves) 35DAS 0.89 >More info 0.86 >More info Control for tissue data Original data GEO bulk
86 Sepals stage15 0.88 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
87 globular-apical 0.87 >More info 0.88 >More info Control for tissue data globular embryo apical tissue Original data GEO bulk
88 whole seeds mature green 0.88 >More info 0.87 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
89 heart-stage-cotyledon 0.87 >More info 0.88 >More info Control for tissue data Original data GEO bulk
90 torpedo-meristem 0.87 >More info 0.87 >More info Control for tissue data torpedo embryo meristem tissue Original data GEO bulk
91 embryo proper mature green 0.88 >More info 0.86 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
92 whole seeds 0.87 >More info 0.87 >More info Control for tissue data Original data GEO bulk
93 B5 +AA -0.88 >More info -0.86 >More info B5 -AA B5 media and treated with AA Original data
94 phloem sieve cells and companion cells 0.87 >More info 0.87 >More info Control for tissue data phloem Original data GEO bulk
95 NAA +AA -0.88 >More info -0.86 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
96 globular-basal 0.86 >More info 0.88 >More info Control for tissue data globular embryo basal tissue Original data GEO bulk
97 embryo proper 0.87 >More info 0.87 >More info Control for tissue data Original data GEO bulk
98 root hair 0.86 >More info 0.87 >More info Control for tissue data root hairs Original data GEO bulk
99 differentiating xylem 0.86 >More info 0.87 >More info Control for tissue data xylem Original data GEO bulk
100 peripheral endosperm heart stage 0.87 >More info 0.86 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
101 micropylar endosperm mature green 0.87 >More info 0.86 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
102 mature endodermis glcal 0.86 >More info 0.86 >More info Control for tissue data endodermis Original data GEO bulk
103 peripheral endosperm mature green 0.86 >More info 0.86 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
104 chalazal endosperm mature green 0.86 >More info 0.86 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
105 micropylar endosperm heart stage 0.86 >More info 0.86 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
106 Stamen stage15 0.86 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
107 embryo proper heart stage 0.86 >More info 0.86 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
108 torpedo-root 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
109 QC 0.85 >More info 0.86 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
110 peripherial endosperm 0.85 >More info 0.86 >More info Control for tissue data Original data GEO bulk
111 whole seeds heart stage 0.85 >More info 0.86 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
112 seed coat heart stage 0.85 >More info 0.86 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
113 seed coat 0.86 >More info 0.85 >More info Control for tissue data Original data GEO bulk
114 pericycle control 0.85 >More info 0.85 >More info Control for tissue data mock pericycle Original data GEO bulk
115 chalazal seed coat 0.85 >More info 0.85 >More info Control for tissue data Original data GEO bulk
116 seed coat mature green 0.85 >More info 0.85 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
117 chalazal endosperm 0.84 >More info 0.85 >More info Control for tissue data Original data GEO bulk
118 chalazal seed coat mature green 0.85 >More info 0.84 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
119 intact root control 0.85 >More info 0.84 >More info Control for tissue data mock whole root Original data GEO bulk
120 Emwa1 inoculated psk 3 dpi 0.86 >More info 0.83 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
121 epidermis control 0.84 >More info 0.84 >More info Control for tissue data mock epidermis Original data GEO bulk
122 Mature pollen 0.85 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
123 pskr1-5 0.86 >More info 0.82 >More info wild type Cotyledons Original data GEO bulk
124 pollen 0.83 >More info 0.83 >More info Control for tissue data pollen grain Original data GEO bulk
125 chalazal endosperm heart stage 0.83 >More info 0.83 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
126 in vitro pollen tube 0.83 >More info 0.81 >More info Control for tissue data pollen tube Original data
127 seed germinating in countinuous light 24h SL 0.92 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
128 Salicylic Acid 3 h -0.86 >More info -0.73 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
129 Shoot apex inflorescence (after bolting) 0.91 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
130 L17 phyA line -0.83 >More info -0.50 >More info WT seedling Original data GEO bulk
131 chalazal seed coat heart stage 0.84 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
132 erf104-ko Flg22 4h -0.64 >More info -0.46 >More info erf104-ko H2O 4h Original data GEO bulk
133 miR393 0h 0.55 >More info 0.49 >More info WT 0h Leaf tissue Original data GEO bulk
134 Starch sheath 2 days NAA 0.63 >More info 0.39 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
135 torpedo-apical 0.88 >More info 0.11 >More info Control for tissue data torpedo embryo apical tissue Original data GEO bulk
136 Nuclei whole embryo 0.88 >More info 0.10 >More info Control for tissue data whole embryo Original data
137 2h KNO3 Whole root 0.62 >More info 0.34 >More info 2h KCl control Whole root Whole root Original data GEO bulk
138 Heat shock optimum 0.29 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
139 Starch sheath 5 days MS incubation 0.54 >More info 0.39 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
140 chalazal endosperm linear-cotyledon -0.35 >More info -0.57 >More info whole seeds linear-cotyledon Original data GEO bulk
141 WT Atum 1h 0.56 >More info 0.33 >More info WT 0h Leaf tissue Original data GEO bulk
142 columella control 0.84 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
143 C2H2 ZF TDNA mutant -0.54 >More info -0.33 >More info Col-WT mature pollen Original data GEO bulk
144 sex4-3 0.51 >More info 0.36 >More info Col-WT leaves Original data GEO bulk
145 sfr3 cold -0.60 >More info -0.26 >More info WT-cold aerial tissues Original data GEO bulk
146 tcp13/+ tcp14/+ 0.23 >More info 0.62 >More info WT inflorescences Original data GEO bulk
147 Starch sheath 2 days MS incubation 0.52 >More info 0.32 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
148 chalazal endosperm pre-globular -0.31 >More info -0.51 >More info whole seed sections pre-globular Original data GEO bulk
149 Col BTH 0.14 >More info 0.67 >More info Col rosettes Original data GEO bulk
150 polysome mRNA eif3k 0.52 >More info 0.28 >More info polysome mRNA WT aerial part Original data GEO bulk
151 fri-flc 0.19 >More info 0.61 >More info WT Original data GEO bulk
152 torpedo-cotyledon 0.87 >More info -0.09 >More info Control for tissue data Original data GEO bulk
153 HSP90 Reduced RNAi-A3 -0.58 >More info -0.20 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
154 ptpks2 0.55 >More info 0.22 >More info Col-WT leaves Original data GEO bulk
155 bri1-116 0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
156 ABA control 0.16 >More info 0.60 >More info No ABA control Original data GEO bulk
157 met1-3 fourth-selfed generation -0.22 >More info -0.54 >More info Col WT leaf Original data GEO bulk
158 4xX2x interploidy cross 0.16 >More info 0.59 >More info 2xX2x cross Original data GEO bulk
159 bZIP TDNA mutant -0.50 >More info -0.24 >More info Col-WT mature pollen Original data GEO bulk
160 phyABCDE Dark 0.17 >More info 0.56 >More info WT Dark Dark whole seedling Original data GEO bulk
161 mpk6-ko H2O 4h 0.59 >More info 0.14 >More info Col-0 H2O 4h Original data GEO bulk
162 dsr1 -0.11 >More info -0.62 >More info WT mock Whole seedling Original data GEO bulk
163 35S:VND7-VP16-GR+CHX -0.15 >More info -0.57 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
164 piffq 2d WL 0.22 >More info 0.50 >More info WT 2d WL whole seedling Original data GEO bulk
165 siliques AtHb1 control 0.17 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
166 atr zebularine -0.50 >More info -0.18 >More info WT zebularine shoot apical meristem Original data
167 ACN1-2 Sucrose -0.10 >More info -0.58 >More info Col-7 Sucrose Original data GEO bulk
168 Col leaf scrape 5 dpi -0.50 >More info -0.17 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
169 phyABDE Dark 0.12 >More info 0.51 >More info WT Dark Dark whole seedling Original data GEO bulk
170 ani1 T0.5 0.04 >More info 0.56 >More info WT T0.5 root tissue Original data GEO bulk
171 cngc19 0.52 >More info 0.07 >More info Col-0 root Original data GEO bulk
172 Cocultivation 8 hrs leaf 0.53 >More info 0.05 >More info Mock cocultivation 8 hrs leaf Leaf Original data
173 Leafminer damaged seedlings 0.01 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
174 shoots bhlh100/101 100uM Fe -0.06 >More info -0.50 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
175 CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold -0.50 >More info -0.05 >More info CSP1 immonoprecipitated RNA 35S:HF-RPL18 12h cold (4C) rosettes Original data GEO bulk
176 Stem tissue 2 days NAA 0.50 >More info 0.03 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
177 elevated CO2 high Mg shoot 0.50 >More info 0.03 >More info atmospheric CO2 high Mg shoot Shoot Original data
178 tcp13 -0.05 >More info 0.58 >More info WT inflorescences Original data GEO bulk
179 2hr transitory KNO3 EPR cell -0.51 >More info -0.01 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
180 Laer pretreat GA Flg22 1h -0.19 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
181 WT Atum 2h 0.54 >More info -0.03 >More info WT 0h Leaf tissue Original data GEO bulk
182 opr3 OPDA 2 h -0.04 >More info 0.55 >More info opr3 0 h Original data GEO bulk
183 CCA1-ox 6am non-polysomal -0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
184 WT NAA 2h 0.52 >More info -0.04 >More info WT 0h Leaf tissue Original data GEO bulk
185 FAMA induced 4h -0.50 >More info 0.03 >More info control 4h Whole seedling Original data GEO bulk
186 Col0-PsmES4326-24hpi -0.14 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
187 erf104-ko H2O 4h 0.54 >More info -0.11 >More info Col-0 H2O 4h Original data GEO bulk
188 cngc1-3 0.51 >More info -0.11 >More info Col-0 root Original data GEO bulk
189 35S::ERF104 H2O 4h 0.54 >More info -0.18 >More info Col-0 H2O 4h Original data GEO bulk
190 IAA7mII over-expressor IAA Treated -0.37 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
191 estradiole-induced ANAC059 0.22 >More info -0.53 >More info transgenic (empty vector inducible system) Original data GEO bulk