4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on pif3 Dark 1h
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "pif3 Dark 1h"  Help Download transcriptome of top 30
Score Experiment Correlation from
pif3 Dark 1h		 Correlation to
pif3 Dark 1h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 pif3 Dark 1h 1.00 >More info 1.00 >More info WT Dark 1h etiolated seedling Original data GEO bulk
2 pif3 Dark 0h 0.78 >More info 0.95 >More info WT Dark 0h etiolated seedling Original data GEO bulk
3 ABA control -0.57 >More info -0.77 >More info No ABA control Original data GEO bulk
4 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.67 >More info 0.63 >More info 2d dark-grown WT seedling Original data GEO bulk
5 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.67 >More info 0.59 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
6 ahg1-1 -0.54 >More info -0.69 >More info ABA control Original data GEO bulk
7 bri1-116 0.48 >More info 0.73 >More info Col seedling Original data GEO bulk
8 gul2-1 mutant -0.52 >More info -0.62 >More info WT 7 day-old whole seedlings Original data
9 mdh -0.55 >More info -0.58 >More info Col Original data GEO bulk
10 Red/FR Light45min -0.50 >More info -0.63 >More info FarRed Light 45min Original data Light treatments
11 GA4 3 h (ga1 seed) -0.59 >More info -0.51 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
12 MPK6 ox Root Hypoxia 0.50 >More info 0.59 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
13 MPK6 ox Shoot Hypoxia 0.36 >More info 0.73 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
14 WT(Ler) Rc50 0.50 >More info 0.57 >More info WT(Ler) Dark Original data GEO bulk
15 WT Red light 18h 0.66 >More info 0.40 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
16 Estradiol4 days -0.44 >More info -0.60 >More info Col Original data GEO bulk
17 estradiol induced LEC1 -0.44 >More info -0.60 >More info control Original data GEO bulk
18 pab polysome -0.40 >More info -0.64 >More info WT polysome seedling shoot/aerial seedling Original data
19 WT Rc50 0.48 >More info 0.55 >More info WT Dark red light whole seedling Original data GEO bulk
20 phyABCDE Dark -0.46 >More info -0.54 >More info WT Dark Dark whole seedling Original data GEO bulk
21 phyB Dark 0.54 >More info 0.45 >More info WT(Ler) Dark Original data GEO bulk
22 phyAphyB Dark -0.55 >More info -0.44 >More info phyB Dark Original data GEO bulk
23 clf-28 swn-7 -0.52 >More info -0.46 >More info Col whole plant Original data GEO bulk
24 Col BRZ 0.41 >More info 0.57 >More info Col mock Original data GEO bulk
25 WT(Ler) Rc15 0.41 >More info 0.56 >More info WT(Ler) Dark Original data GEO bulk
26 WT (Ler) CK25 0.32 >More info 0.64 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
27 cop1 Seedling Dark 0.50 >More info 0.44 >More info WT Seedling Dark Original data GEO bulk
28 Shoot apex inflorescence (after bolting) 0.28 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
29 Red Light 45min -0.42 >More info -0.51 >More info White Light 45min Original data Light treatments
30 Dark 4 h pls UV-A 5 min 0.39 >More info 0.53 >More info Dark 4 h Original data Light treatments
31 TNT-seedlings -0.13 >More info -0.78 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
32 whole roots 140 mM NaCl 4 hour -0.34 >More info -0.55 >More info whole roots standard Original data GEO bulk
33 vte1-1 1d vernalization -0.50 >More info -0.39 >More info WT 1d vernalization Original data GEO bulk
34 CCA14 dark early -0.22 >More info -0.67 >More info Col dark early Original data GEO bulk
35 phyABDE Rc50 0.57 >More info 0.32 >More info phyABDE Dark red light whole seedling Original data GEO bulk
36 embryo ABA -0.37 >More info -0.50 >More info embryo-control ABA embryo Original data GEO bulk
37 ABI3GR +DEX +CHX -0.21 >More info -0.62 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
38 piffq 2d WL -0.19 >More info -0.62 >More info WT 2d WL whole seedling Original data GEO bulk
39 Chemically -0.09 >More info -0.70 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
40 2hr continuous KNO3 ECR cell -0.21 >More info -0.55 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
41 ABA DFPM -0.53 >More info -0.22 >More info control Original data GEO bulk
42 etiolated atbzip16 -0.13 >More info -0.62 >More info etiolated Ler etiolated aerial part of seedlings Original data GEO bulk
43 DUO1 induced 6h -0.18 >More info -0.56 >More info 6hr-not-induced whole plant Original data GEO bulk
44 Ler KAR1 24h seed -0.09 >More info 0.80 >More info Ler WATER 24h seed KAR1 seed Original data GEO bulk
45 shoots bhlh100/101 100uM Fe -0.01 >More info 0.72 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
46 ahg3-1 -0.57 >More info -0.13 >More info ABA control Original data GEO bulk
47 seed germinating in countinuous light 24h SL -0.00 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
48 pGL1::GL1-GR Dex 24hours -0.14 >More info -0.52 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
49 10min Reillumination Total RNA -0.13 >More info -0.53 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
50 dsr1 0.08 >More info 0.58 >More info WT mock Whole seedling Original data GEO bulk
51 dTLEc control 0.08 >More info 0.53 >More info wt control leaves Original data GEO bulk
52 AFB1 0h -0.07 >More info -0.53 >More info Col 0h Leaf Original data GEO bulk
53 Col BTH -0.10 >More info 0.67 >More info Col rosettes Original data GEO bulk
54 long 17-degree- -0.00 >More info 0.55 >More info control long Original data GEO bulk
55 IAA7mII over-expressor IAA Treated -0.15 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
56 cpctry 0.02 >More info -0.53 >More info Col Original data GEO bulk
57 WT Red light 1h 0.50 >More info 0.00 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
58 Laer pretreat GA Flg22 1h -0.21 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
59 Heat shock optimum -0.16 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
60 nas4x leaves + Fe 0.04 >More info -0.51 >More info WT leaves + Fe Leaves Original data GEO bulk
61 myb3 myb3r4d 0.12 >More info -0.59 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
62 CCA1-ox 6am non-polysomal -0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
63 Leafminer damaged seedlings -0.13 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
64 root - 08% oxygen - 48h -0.16 >More info 0.54 >More info root - 21% oxygen - 48h Original data GEO bulk
65 siliques AtHb1 control -0.22 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
66 Col0-PsmES4326-24hpi -0.36 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk