4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on dark-hs
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List of experiments correlated with "dark-hs"  Help Download transcriptome of top 30
Score Experiment Correlation from
dark-hs		 Correlation to
dark-hs		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 dark-hs 1.00 >More info 1.00 >More info dark-control seedling Original data
2 Col-0 HS 0.87 >More info 0.89 >More info Col-0 control heat shocked seedling Original data GEO bulk
3 WT (Col-0) heat shock 0.87 >More info 0.89 >More info WT (Col-0) whole seedling Original data GEO bulk
4 Seedling-HeatStressed TOTALmRNA 0.88 >More info 0.88 >More info Seedling-control TOTALmRNA seedling Original data
5 Ws HS 0.86 >More info 0.87 >More info Ws control heat shocked seedling Original data GEO bulk
6 Col-0 37C 0.88 >More info 0.85 >More info Col-0 22C Original data GEO bulk
7 Seedling-HeatStressed POLYSOMESmRNA 0.87 >More info 0.86 >More info Seedling-control POLYSOMESmRNA seedling Original data
8 Heat 0.86 >More info 0.84 >More info Control 90 minutes at 38°C. Original data GEO bulk
9 light-hs 0.84 >More info 0.86 >More info light-control seedling Original data
10 Heat and anoxia 0.84 >More info 0.79 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
11 WT heat shock 0.82 >More info 0.76 >More info WT untreated above-ground parts Original data GEO bulk
12 HS 0.83 >More info 0.75 >More info noneHS Original data GEO bulk
13 Heat shock 20%Inhibition 0.83 >More info 0.72 >More info Heat shock baseline Photosynthesis at 20% inhibition from optimum leaf first fully expanded Original data GEO bulk
14 Anoxia 0.77 >More info 0.64 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
15 QK HS 0.65 >More info 0.74 >More info QK control heat shocked seedling Original data GEO bulk
16 hsfa1 quadruple mutant heat shock -0.78 >More info -0.59 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
17 Heat shock 30%Inhibition 0.79 >More info 0.56 >More info Heat shock baseline Photosynthesis at 30% inhibition from optimum leaf first fully expanded Original data GEO bulk
18 9 hr Hypoxia 1 hr recovery Total RNA 0.73 >More info 0.60 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
19 WT 30μM arsenate 8 hours. 0.76 >More info 0.54 >More info WT control (not supplemented). Original data
20 Col leaf scrape 5 dpi 0.69 >More info 0.58 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
21 Heat 6h-recover 48h -0.81 >More info -0.46 >More info Heat 6h rosettes - 5 leaves stage Original data
22 Heat 6h 0.79 >More info 0.47 >More info At mock rosettes - 5 leaves stage Original data
23 Red/FR Light45min 0.40 >More info 0.86 >More info FarRed Light 45min Original data Light treatments
24 NJ15 0.57 >More info 0.68 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
25 Heat no recovery 0.70 >More info 0.54 >More info Mock no recovery seedling Original data GEO bulk
26 plant (tga2-5-6) 4h phytoprostane A1 0.74 >More info 0.50 >More info plant (tga2-5-6) 4h control Original data GEO bulk
27 9 hr Hypoxia 1 hr recovery IP RNA 0.69 >More info 0.55 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
28 (Col-0)+200 uM As 0.74 >More info 0.49 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
29 9 hr Hypoxia Total RNA 0.67 >More info 0.55 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
30 Heat shock optimum 0.53 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
31 Cocultivation 8 hrs root 0.66 >More info 0.49 >More info Mock cocultivation 8 hrs root Root Original data
32 9 hr Hypoxia IP RNA 0.64 >More info 0.50 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
33 inhibitor A Treated 0.66 >More info 0.47 >More info Negative Control Original data GEO bulk
34 dicamba 0.56 >More info 0.55 >More info WT mock whole seedling Original data GEO bulk
35 17 2h labelled -0.60 >More info -0.51 >More info 27 1h labelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
36 17 2h unlabelled -0.61 >More info -0.49 >More info 27 1h unlabelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
37 17 2h total -0.59 >More info -0.51 >More info 27 1h total 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
38 FarRed Light 45min -0.45 >More info -0.64 >More info White Light 45min Original data Light treatments
39 rosettes WT drought 0.57 >More info 0.52 >More info rosettes WT watered Original data GEO bulk
40 A2hsfa1-ox in quadruple mutant heat shock 0.68 >More info 0.40 >More info hsfa1 quadruple mutant heat shock whole seedling Original data GEO bulk
41 WT+H2O2 0.60 >More info 0.47 >More info WT H2O2 Original data GEO bulk
42 rosettes myoox drought 0.58 >More info 0.49 >More info rosettes myoox watered Original data GEO bulk
43 (Col-0)+100 uM As 0.67 >More info 0.39 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
44 24h SL WT -0.64 >More info -0.41 >More info 0 h WT seed Original data
45 embryo paclobutrazol 0.58 >More info 0.47 >More info embryo-control paclobutrazol embryo Original data GEO bulk
46 Col-0 low oxygen 0.68 >More info 0.35 >More info Col-0 control low oxygen root Original data GEO bulk
47 WT-16ºC -0.45 >More info -0.58 >More info WT-23ºC Original data GEO bulk
48 ahg1-1 0.35 >More info 0.67 >More info ABA control Original data GEO bulk
49 24h SL Attim 17-1 1 -0.64 >More info -0.37 >More info 0 h Attim 17-1 1 seed Original data
50 Col0-PsmES4326-24hpi 0.40 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
51 tumour -0.64 >More info -0.36 >More info non-tumor tumour Original data GEO bulk
52 Salt Stress 24 h (root) 0.58 >More info 0.42 >More info Stress mock 24 h (root) Original data Stress treatments
53 WT H2O2 3h 0.61 >More info 0.38 >More info WT water 3h 3h_H2O2 Original data GEO bulk
54 inhibitor B Treated 0.61 >More info 0.38 >More info Negative Control Original data GEO bulk
55 Osmotic Stress 24 h (root) 0.58 >More info 0.41 >More info Stress mock 24 h (root) Original data Stress treatments
56 cngc1-3 -0.30 >More info -0.69 >More info Col-0 root Original data GEO bulk
57 IAA/inhibitor A Treated 0.65 >More info 0.33 >More info IAA Treated Original data GEO bulk
58 Salt Stress 24 h (shoot) 0.63 >More info 0.34 >More info Stress mock 24 h (shoot) Original data Stress treatments
59 WT seedlings MV 0.56 >More info 0.41 >More info WT seedlings control Seedlings Original data GEO bulk
60 Phytoprostane A1 4 h 0.66 >More info 0.31 >More info Col-0 Original data GEO bulk
61 Nuclear GSH2 -0.60 >More info -0.37 >More info Cytoplasmic GSH2 Control Original data GEO bulk
62 abi3-6 16 DAF Seed -0.56 >More info -0.41 >More info WT (Col-0) 16 DAF Seed developing seeds dissected from sliques Original data
63 WT Seedling BL+ABA 0.59 >More info 0.37 >More info WT Seedling BL Original data GEO bulk
64 downy mildew cotyledons late stage 0.72 >More info 0.24 >More info mock inoculated Cotyledons Original data GEO bulk
65 Light 0.5h polysome-bound 0.57 >More info 0.38 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
66 48 h S WT -0.59 >More info -0.36 >More info 0 h WT seed Original data
67 FAMA induced 4h 0.43 >More info 0.52 >More info control 4h Whole seedling Original data GEO bulk
68 2 hr Hypoxia Total RNA 0.56 >More info 0.38 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
69 gul2-1 mutant 0.55 >More info 0.39 >More info WT 7 day-old whole seedlings Original data
70 embryo ABA 0.50 >More info 0.44 >More info embryo-control ABA embryo Original data GEO bulk
71 60m light 0.42 >More info 0.52 >More info before light whole seedlings Original data GEO bulk
72 CMP 4hr 0.54 >More info 0.39 >More info Acetone 4hr root Original data GEO bulk
73 csn5 (csn5a-2 csn5b) light 0.56 >More info 0.37 >More info WT light Original data GEO bulk
74 oligomycin 4 h 0.51 >More info 0.42 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
75 rdr6-15 -0.52 >More info -0.41 >More info Col-0 Original data GEO bulk
76 cell culture 4 h phytoprostane A1 0.68 >More info 0.24 >More info cell culture 4 h control Original data GEO bulk
77 ABA 1 h 0.36 >More info 0.56 >More info Mock 1 h Original data Basic hormone treatment of seedlings
78 48 h S Attim 17-1 1 -0.58 >More info -0.34 >More info 0 h Attim 17-1 1 seed Original data
79 pil5 red light 0.57 >More info 0.35 >More info Col-0 red light Original data GEO bulk
80 root endodermis and quiescent center 40 mM NaCl 0.50 >More info 0.42 >More info root endodermis and quiescent center Original data GEO bulk
81 C58 35dpi -0.58 >More info -0.34 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
82 phyABCDE Dark 0.52 >More info 0.39 >More info WT Dark Dark whole seedling Original data GEO bulk
83 SA 0.54 >More info 0.37 >More info WT mock Whole seedling Original data GEO bulk
84 whole roots 140 mM NaCl 4 hour 0.40 >More info 0.51 >More info whole roots standard Original data GEO bulk
85 6 h SL WT -0.57 >More info -0.34 >More info 0 h WT seed Original data
86 Col-O high light 0.61 >More info 0.30 >More info Col-O bule light Original data GEO bulk
87 (Ws-2)+100 uM As 0.63 >More info 0.27 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
88 SLWF infested 0.68 >More info 0.22 >More info SLWF uninfested rosette tissue Original data GEO bulk
89 dsr1 SA Treated 0.55 >More info 0.34 >More info SA Whole seedling Original data GEO bulk
90 Col-0 2HS 0.50 >More info 0.39 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
91 hira-root -0.53 >More info -0.36 >More info WT-root root Original data
92 Col-0 DCA 6d -0.35 >More info -0.54 >More info Col-0 MOCK 6d Original data GEO bulk
93 atgsnor1-1 -0.35 >More info -0.54 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
94 plant (tga2-5-6) 4h OPDA 0.55 >More info 0.33 >More info plant (tga2-5-6) 4h control Original data GEO bulk
95 1h +Pi -0.36 >More info -0.52 >More info 1h -Pi root Original data GEO bulk
96 5-Triiodobenzoic acid3 h 0.59 >More info 0.29 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
97 6 h SL Attim 17-1 1 -0.57 >More info -0.31 >More info 0 h Attim 17-1 1 seed Original data
98 flu 0.54 >More info 0.33 >More info WT Col Original data GEO bulk
99 Roots Cd -0.56 >More info -0.31 >More info Roots control Cd Root Original data GEO bulk
100 WT 90-105 min Xanthomonas 0.57 >More info 0.30 >More info WT T0 Original data GEO bulk
101 Osmotic Stress 24 h (shoot) 0.58 >More info 0.28 >More info Stress mock 24 h (shoot) Original data Stress treatments
102 Dark 40min pls UV-AB 5min 0.52 >More info 0.33 >More info Dark 45 min Original data Light treatments
103 P.p 6hai 0.33 >More info 0.52 >More info At-Control roots Original data GEO bulk
104 penta MeJA 1h 0.57 >More info 0.28 >More info Laer MeJA 1h leaf discs Original data GEO bulk
105 Col-0 flu HL 3h 0.58 >More info 0.27 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
106 Laer pretreat GA Flg22 1h 0.14 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
107 Wounding Stress3 h (root) -0.51 >More info -0.33 >More info Stress mock 3 h (root) Original data Stress treatments
108 2hr transitory KNO3 ECR cell -0.30 >More info -0.54 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
109 ABA control 0.25 >More info 0.59 >More info No ABA control Original data GEO bulk
110 atsf1-2 mutant seedling 0.55 >More info 0.28 >More info Col-0 seedling seedlings Original data
111 flu over-tAPX 0.55 >More info 0.27 >More info WT Col Original data GEO bulk
112 root cells cortex 140mM NaCl 1 hour 0.59 >More info 0.23 >More info root cells cortex standard 1 hour root cells cortex Original data
113 coi1-2 0.51 >More info 0.30 >More info Col-0 mock Whole seedling Original data GEO bulk
114 UV 0.50 >More info 0.31 >More info WT aerial region Original data GEO bulk
115 2h KNO3 Whole root -0.51 >More info -0.30 >More info 2h KCl control Whole root Whole root Original data GEO bulk
116 DUO1 induced 12h 0.25 >More info 0.56 >More info 12hr-not-induced whole plant Original data GEO bulk
117 DUO1 induced 24h 0.24 >More info 0.56 >More info 24hr-not-induced whole plant Original data GEO bulk
118 IMI 4mM 0.57 >More info 0.23 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
119 AZC 0.56 >More info 0.23 >More info noneHS Original data GEO bulk
120 root endodermis -S -0.52 >More info -0.26 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
121 2 h EST -0.56 >More info -0.22 >More info mock 2 h EST seedling Original data GEO bulk
122 Nuclear GSH1 -0.56 >More info -0.22 >More info Cytoplasmic GSH1 Control Original data GEO bulk
123 downy mildew cotyledons early stage -0.54 >More info -0.23 >More info mock inoculated Cotyledons Original data GEO bulk
124 Col light-dark EtOH 0.54 >More info 0.23 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
125 safener treated 0.51 >More info 0.26 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
126 NAA +AA 0.25 >More info 0.52 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
127 B5 +AA 0.25 >More info 0.52 >More info B5 -AA B5 media and treated with AA Original data
128 2 hr Hypoxia IP RNA 0.51 >More info 0.25 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
129 Col-0 0h NAA 0.55 >More info 0.21 >More info Col-0 6h MOCK Original data GEO bulk
130 ein3 eil1 0.54 >More info 0.22 >More info Col-0 mock Whole seedling Original data GEO bulk
131 WT 2-4h Xanthomonas 0.59 >More info 0.16 >More info WT T0 Original data GEO bulk
132 plant (Col-0) 4h phytoprostane A1 0.60 >More info 0.15 >More info plant (tga2-5-6) 4h control Original data GEO bulk
133 gun1gun5 far-red pretreated -0.50 >More info -0.24 >More info WT far-red pretreated Original data GEO bulk
134 GRX-overexpression seedlings MV -0.24 >More info -0.50 >More info WT seedlings MV Seedlings Original data GEO bulk
135 Dark 40 min pls UV-A 5 min 0.53 >More info 0.20 >More info Dark 45 min Original data Light treatments
136 Col BTH 0.04 >More info 0.67 >More info Col rosettes Original data GEO bulk
137 bri1-116 -0.04 >More info 0.73 >More info Col seedling Original data GEO bulk
138 gai Control 0.54 >More info 0.14 >More info Laer Control leaf discs Original data GEO bulk
139 siliques AtHb1 control 0.16 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
140 root hypoxia total 0.55 >More info 0.12 >More info root control total Original data GEO bulk
141 root cells cortex 140mM NaCl 20 hours 0.55 >More info 0.12 >More info root cells cortex standard 1 hour root cells cortex Original data
142 GV3101 3hpi -0.50 >More info -0.16 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
143 root callus inducing medium 96 h -0.51 >More info -0.15 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
144 root callus inducing medium 48 h -0.50 >More info -0.16 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
145 Te CA 0.54 >More info 0.12 >More info Col CA Leaves Original data
146 Laer treat paclobutrazol (PAC) 0.53 >More info 0.12 >More info Laer Control leaf discs Original data GEO bulk
147 IAA7mII over-expressor IAA Treated -0.05 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
148 root cells cortex 140mM NaCl 8 hours 0.52 >More info 0.11 >More info root cells cortex standard 1 hour root cells cortex Original data
149 MYB76 OE 0.53 >More info 0.10 >More info WT for MYB29/76 Original data GEO bulk
150 seedling 24h after HZE atm-1 0.11 >More info 0.50 >More info seedling day 2 unirradiated atm-1 24h Original data
151 root cells cortex 140mM NaCl 48 hours 0.53 >More info 0.07 >More info root cells cortex standard 1 hour root cells cortex Original data
152 root - 04% oxygen - 48h -0.02 >More info -0.56 >More info root - 21% oxygen - 48h Original data GEO bulk
153 ANAC102 knock-out low oxygen -0.62 >More info 0.05 >More info Col-0 low oxygen Original data GEO bulk
154 Drought Stress 24 h (root) -0.53 >More info -0.02 >More info Stress mock 24 h (root) Original data Stress treatments
155 +1.6 mM Tween 20 1 h. 0.54 >More info -0.00 >More info +distilled water 1 h. Original data GEO bulk
156 sicy-192 gun1-101 cotyledons 0.51 >More info 0.01 >More info WT cotyledons cotyledons Original data
157 Leafminer damaged seedlings -0.04 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
158 root - 08% oxygen - 48h 0.01 >More info -0.50 >More info root - 21% oxygen - 48h Original data GEO bulk
159 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
160 seed germinating in countinuous light 24h SL -0.20 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
161 DUO1 induced 6h -0.10 >More info 0.53 >More info 6hr-not-induced whole plant Original data GEO bulk
162 0h ivd 0.09 >More info -0.51 >More info 0h wt Original data
163 Shoot apex inflorescence (after bolting) -0.27 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
164 Norflurazon 0.67 >More info -0.30 >More info Col-0 Original data GEO bulk
165 Norflurazon 0.67 >More info -0.30 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
166 ms35 silique stage 5 -0.52 >More info 0.16 >More info Ler .5 anther and filament Original data GEO bulk
167 Polysomal RNA 35S:HF-RPL18 0.18 >More info -0.52 >More info Polysomal RNA csp1 12h non-stress rosettes Original data GEO bulk
168 MPK6 ox Shoot Hypoxia 0.54 >More info -0.39 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk