Whole root - low pH 48H

4.0:Analysis result - correlation network

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Module-based correlation network(MCN) centered on Whole root - low pH 48H

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List of experiments correlated with "Whole root - low pH 48H"

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Score	Experiment	Correlation from Whole root - low pH 48H	Correlation to Whole root - low pH 48H	Control Experiment	Treatment	Tissue	Link to original data	Experimental Category
1	Whole root - low pH 48H	1.00 >More info	1.00 >More info	Whole root - Std pH 48H	pH 4.6 for 48 hr		Original data	GEO bulk
2	CLO 4mM	0.53 >More info	0.59 >More info	untreated	4 weeks old at time of treatment	whole leaf	Original data	GEO bulk
3	FAMA induced 4h	-0.68 >More info	-0.42 >More info	control 4h		Whole seedling	Original data	GEO bulk
4	Starch sheath 5 days MS incubation	0.57 >More info	0.53 >More info	Starch sheath T0	MS incubation	laser capture microdissection	Original data	GEO bulk
5	bri1-116	0.37 >More info	0.73 >More info	Col		seedling	Original data	GEO bulk
6	albino Ds13-2198-1	-0.53 >More info	-0.54 >More info	control			Original data	GEO bulk
7	bbx24 in Simulated Shade	0.60 >More info	0.46 >More info	WT in simulated shade	shade	seedling	Original data
8	8 hr ammonium	0.65 >More info	0.37 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
9	root epidermis and lateral root cap 40 mM NaCl	-0.77 >More info	-0.25 >More info	root epidermis and lateral root cap			Original data	GEO bulk
10	roottip control p35S	-0.48 >More info	-0.51 >More info	roottip control total	control	roottip	Original data	GEO bulk
11	8 hr nitrate	0.69 >More info	0.29 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
12	WT leaves - Fe	0.65 >More info	0.31 >More info	WT leaves + Fe		Leaves	Original data	GEO bulk
13	Starch sheath 2 days NAA	0.52 >More info	0.43 >More info	Starch sheath T0	Stem starch sheath under NAA in vitro treatment before cell divission	laser capture microdissection	Original data	GEO bulk
14	Leafminer damaged seedlings	0.38 >More info	0.56 >More info	Healthy seedlings		leaves	Original data	GEO bulk
15	mutant acs1A (single mutant)	0.64 >More info	0.30 >More info	col control (single mutant)			Original data	GEO bulk
16	roottip hypoxia p35S	-0.57 >More info	-0.36 >More info	roottip hypoxia total	hypoxia	roottip	Original data	GEO bulk
17	Dark	0.59 >More info	0.32 >More info	Control			Original data	GEO bulk
18	root control pSHR	-0.41 >More info	-0.50 >More info	root control total	control	root	Original data	GEO bulk
19	UV Stress 24 h (shoot)	0.67 >More info	0.22 >More info	Stress mock 24 h (shoot)			Original data	Stress treatments
20	sfr6 control	-0.62 >More info	-0.27 >More info	WT control		All aerial tissue	Original data	GEO bulk
21	sfr2 control	-0.57 >More info	-0.32 >More info	WT control		All aerial tissue	Original data	GEO bulk
22	ubc13A-es	-0.51 >More info	-0.36 >More info	Col-es		root	Original data	GEO bulk
23	Whole root - low pH 1H	0.58 >More info	0.29 >More info	Whole root - Std pH 1H	pH 4.6 for 1 hr		Original data	GEO bulk
24	root protoplasts 40 mM NaCl	-0.69 >More info	-0.17 >More info	whole roots 40 mM NaCl		protoplasting and FACS sorting	Original data	GEO bulk
25	ice1 24H Cold	0.65 >More info	0.21 >More info	WT 24H Cold			Original data	GEO bulk
26	col-5 hrpA 2h	0.50 >More info	0.36 >More info	col-5 MgCl2 2h		Whole leaf	Original data	GEO bulk
27	35S-MIF1 dark grown	0.69 >More info	0.17 >More info	Dark-grown WT control			Original data	GEO bulk
28	eds16 whole leaf 7d UI	-0.27 >More info	-0.59 >More info	Col whole leaf 7d UI		whole leaf	Original data	GEO bulk
29	leaf blade in D	0.68 >More info	0.17 >More info	leaf blade in WL		leaf blades	Original data	GEO bulk
30	Chemically	-0.31 >More info	-0.54 >More info	Solvent	treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid	whole seedlings	Original data
31	Laer pretreat GA Flg22 1h	0.14 >More info	0.71 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
32	pnp1-1 1wk -P	0.51 >More info	0.33 >More info	WT 1wk -P	No phosphate medium	seedlings without roots	Original data	GEO bulk
33	4C 2h(SOIL)	0.50 >More info	0.34 >More info	4C 0h(SOIL)			Original data	GEO bulk
34	Aerobic prt6	0.64 >More info	0.20 >More info	Aerobic Col-0	aerobic (normal) conditions	seedlings	Original data	GEO bulk
35	Col whole leaf 5dpi	0.64 >More info	0.20 >More info	Col whole leaf 0h UI		whole leaf	Original data	GEO bulk
36	3.5h KNO3 Whole root	0.72 >More info	0.12 >More info	3.5h KCl control Whole root		Whole root	Original data	GEO bulk
37	Col-0 norflurazon	0.62 >More info	0.22 >More info	Col-0 control			Original data	GEO bulk
38	root longitudinal zone-3 NaCl	-0.60 >More info	-0.24 >More info	root longitudinal zone-3			Original data	GEO bulk
39	OXUPB1-2 meristematic zone	-0.65 >More info	-0.17 >More info	Col-0 meristematic zone		Seedling root meristem zone	Original data	GEO bulk
40	Heat shock optimum	0.17 >More info	0.65 >More info	Heat shock baseline	Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
41	npr1	0.59 >More info	0.23 >More info	WT(COL)			Original data	GEO bulk
42	250uM K-nitrate 20min roots	0.51 >More info	0.30 >More info	250uM KCl 20min roots		Roots	Original data	GEO bulk
43	Split KNO3 roots - 2days	0.53 >More info	0.27 >More info	Split KCl roots - 2days	5mM KNO3 on ONE side for 2 days	roots	Original data	GEO bulk
44	Osmotic Stress 24 h (root)	-0.55 >More info	-0.24 >More info	Stress mock 24 h (root)			Original data	Stress treatments
45	mutant acs5D (single mutant)	0.57 >More info	0.21 >More info	col control (single mutant)			Original data	GEO bulk
46	brm-101	0.56 >More info	0.21 >More info	Ler			Original data	GEO bulk
47	rpl24 total	0.70 >More info	0.07 >More info	WT total		seedling shoot/aerial seedling	Original data
48	mutant acs4A (single mutant)	0.58 >More info	0.19 >More info	col control (single mutant)			Original data	GEO bulk
49	ABA	-0.55 >More info	-0.22 >More info	control			Original data	GEO bulk
50	gun1-9 norflurazon	0.60 >More info	0.16 >More info	gun1-9 control			Original data	GEO bulk
51	sta1	0.50 >More info	0.26 >More info	WT			Original data	GEO bulk
52	WT 30μM phosphate 8 hours.	0.67 >More info	0.09 >More info	WT control (not supplemented).			Original data
53	mutant acs9B (single mutant)	0.56 >More info	0.19 >More info	col control (single mutant)			Original data	GEO bulk
54	FLIGHT TAGESB plate6 ROOTS	-0.65 >More info	-0.10 >More info	GROUND CONTROL TAGESB plate6 ROOTS		plant tissue	Original data
55	Col whole leaf 3dpi	0.66 >More info	0.09 >More info	Col whole leaf 0h UI		whole leaf	Original data	GEO bulk
56	toc1-1-85hr	-0.25 >More info	-0.50 >More info	WT-untreated-85hr	none	seedlings aerial tissue	Original data	GEO bulk
57	cpctry	-0.23 >More info	-0.52 >More info	Col			Original data	GEO bulk
58	Col BTH	0.08 >More info	0.67 >More info	Col		rosettes	Original data	GEO bulk
59	1.5 hr nitrate	0.56 >More info	0.17 >More info	immediately prior to nitrogen addtion		roots from hydroponically grown plants	Original data	GEO bulk
60	root hypoxia pSHR	-0.17 >More info	-0.56 >More info	root hypoxia total	hypoxia	root	Original data	GEO bulk
61	FarRed Light 4 h	-0.67 >More info	-0.06 >More info	White Light 4 h			Original data	Light treatments
62	Ws 2h KNO3	0.60 >More info	0.13 >More info	Ws 2h KCl	2 hours of 5 mM KNO3	Arabidopsis root	Original data	GEO bulk
63	24h volatiles Sm. R3089	0.58 >More info	0.15 >More info	24h untreated		whole seedling	Original data	GEO bulk
64	clf-28	0.64 >More info	0.08 >More info	Col		whole plant	Original data	GEO bulk
65	estradiole-induced ANAC092	-0.61 >More info	-0.11 >More info	transgenic (empty vector inducible system)			Original data	GEO bulk
66	root cap pGL2 3h BL	-0.55 >More info	-0.16 >More info	root cap pGL2 0h BL	brassinosteroid	root	Original data
67	Ler 10C long-day	-0.50 >More info	-0.21 >More info	Ler 20C long-day		seeds	Original data	GEO bulk
68	ex1 flu dark 8hours/30 minute light	0.59 >More info	0.12 >More info	col dark 8hours/30 minute light			Original data	GEO bulk
69	whole roots 140 mM NaCl 4 hour	-0.51 >More info	-0.20 >More info	whole roots standard			Original data	GEO bulk
70	WT 1wk -P	-0.62 >More info	-0.08 >More info	WT 1wk +P	No phosphate medium	seedlings without roots	Original data	GEO bulk
71	cpr5	0.60 >More info	0.10 >More info	WT(COL)			Original data	GEO bulk
72	FAMA induced 48h	0.77 >More info	-0.08 >More info	control 48h		Whole seedling	Original data	GEO bulk
73	hsfa1 quadruple mutant heat shock	0.66 >More info	0.03 >More info	WT (Col-0) heat shock		whole seedling	Original data	GEO bulk
74	sfr3 control	-0.65 >More info	-0.04 >More info	WT control		All aerial tissue	Original data	GEO bulk
75	WT Seedling BL+ABA	0.63 >More info	0.05 >More info	WT Seedling BL			Original data	GEO bulk
76	SPT4-R3 seedlings0 DAS	0.51 >More info	0.17 >More info	Col-0 seedlings0 DAS		seedlings	Original data
77	pkl Mutant mock	0.58 >More info	0.10 >More info	WT mock			Original data	GEO bulk
78	npr1 sni1 brca2a	-0.51 >More info	-0.16 >More info	npr1 sni1 water	water	seedling	Original data	GEO bulk
79	grf1/grf2/grf3	-0.55 >More info	-0.12 >More info	WS			Original data	GEO bulk
80	CCA1-ox 12am small polysomal	-0.64 >More info	-0.03 >More info	WT 12am small polysomal		aerial part	Original data
81	hyl1	0.59 >More info	0.07 >More info	Col-0			Original data	GEO bulk
82	small flower buds J10B	0.57 >More info	0.09 >More info	small flower buds J03B		small flower buds	Original data	GEO bulk
83	Col whole leaf 6hpi	0.60 >More info	0.06 >More info	Col whole leaf 0h UI		whole leaf	Original data	GEO bulk
84	RRE2 Chitin	-0.54 >More info	-0.11 >More info	Chitin			Original data	GEO bulk
85	Col-0 low oxygen	0.50 >More info	0.15 >More info	Col-0			Original data	GEO bulk
86	mp-B4149 mutant IAA	-0.52 >More info	-0.13 >More info	GR-bdl IAA			Original data	GEO bulk
87	nas4x leaves - Fe	-0.52 >More info	-0.12 >More info	WT leaves - Fe		Leaves	Original data	GEO bulk
88	CHS-silenced type	-0.59 >More info	-0.04 >More info	anthocyanin-producing revertants		total tissue	Original data	GEO bulk
89	essp3/brm5 mutant	-0.51 >More info	-0.12 >More info	WT (Pro-beta-CG;GUS)			Original data	GEO bulk
90	BAM8 Ox untreated	-0.55 >More info	-0.08 >More info	WT untreated	none	shoot	Original data
91	root callus inducing medium 12 h	0.53 >More info	0.09 >More info	root callus inducing medium 0 h	12 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
92	miR mutant (higher order mutant)	0.52 >More info	0.10 >More info	col control (higher order mutant)			Original data	GEO bulk
93	TNT-seedlings	-0.04 >More info	-0.58 >More info	DMF-control-seedlings	TNT-treated-seedlings	whole plant	Original data	GEO bulk
94	60m light	-0.50 >More info	-0.11 >More info	before light		whole seedlings	Original data	GEO bulk
95	xyl-grown cell culture- 1h 1mM Fru	-0.04 >More info	-0.57 >More info	xyl-grown cell culture- 1h 1mM Xyl		cell culture	Original data
96	rhd2	-0.50 >More info	-0.10 >More info	WT		Small excised segments of primary root tissue corresponding to root-hair elongation zone	Original data	GEO bulk
97	Dark 44min pls RedLigh 1min	-0.52 >More info	-0.08 >More info	Dark 45 min			Original data	Light treatments
98	cpr5npr1	0.52 >More info	0.07 >More info	WT(COL)			Original data	GEO bulk
99	middle flower buds J10B	0.53 >More info	0.06 >More info	middle flower buds J03B		middle flower buds	Original data	GEO bulk
100	seed germinating in countinuous light 24h SL	-0.08 >More info	0.67 >More info	Control for tissue data		seed	Original data	GEO bulk
101	HSP90 Reduced hsp90.2	0.51 >More info	0.08 >More info	HSP90 Reduced Control		All aerial tissue	Original data	GEO bulk
102	KAN1-GR 60min	-0.62 >More info	0.03 >More info	KAN1-GR 0min			Original data	GEO bulk
103	stele auxin	-0.50 >More info	-0.09 >More info	stele control	5 uM indole-3-acetic acid	stele	Original data	GEO bulk
104	A2hsfa1-ox in quadruple mutant heat shock	-0.54 >More info	-0.04 >More info	hsfa1 quadruple mutant heat shock		whole seedling	Original data	GEO bulk
105	Laer Flg22(Agrobacterium) 2h	0.02 >More info	0.56 >More info	Laer Control		leaf discs	Original data	GEO bulk
106	Whole root - low pH 30min	-0.69 >More info	0.11 >More info	Whole root - Std pH 30min	pH 4.6 for 30 min		Original data	GEO bulk
107	pvip1 pvip2 seedling	0.59 >More info	-0.02 >More info	Col-0 seedling		seedling	Original data	GEO bulk
108	short 8-degree-	-0.64 >More info	0.08 >More info	control short			Original data	GEO bulk
109	CCA14 dark late	-0.51 >More info	-0.05 >More info	Col dark late			Original data	GEO bulk
110	til1-1 37C	-0.51 >More info	-0.04 >More info	Col-0 37C			Original data	GEO bulk
111	auxin and brassinazole seedlings	0.53 >More info	0.02 >More info	auxin seedlings			Original data	GEO bulk
112	Col BRZ	0.53 >More info	-0.00 >More info	Col mock			Original data	GEO bulk
113	Kas -Fe 24h Roots	0.50 >More info	0.03 >More info	Kas +Fe 24h Roots			Original data	GEO bulk
114	Kas-1 -Fe 24h	0.50 >More info	0.03 >More info	Kas-1 +Fe 24h		roots	Original data	GEO bulk
115	Col0-PsmES4326-24hpi	-0.08 >More info	0.61 >More info	Col0-mock-24hpi		leaf	Original data	GEO bulk
116	Laer Pst DC3000 12hpi	0.68 >More info	-0.16 >More info	Laer Control		leaf discs	Original data	GEO bulk
117	Cs root	0.50 >More info	0.02 >More info	control root			Original data	GEO bulk
118	Shoot apex inflorescence (after bolting)	-0.13 >More info	0.65 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
119	CCA1-ox 12am total RNA	-0.54 >More info	0.03 >More info	WT 12am total RNA		aerial part	Original data
120	IAA19mII over-expressor IAA Treated	-0.52 >More info	0.03 >More info	empty vector IAA Treated			Original data	GEO bulk
121	root longitudinal zone-3 -Fe	0.56 >More info	-0.09 >More info	root longitudinal zone-3 standard			Original data	GEO bulk
122	SOS1 100mM NaCl	-0.56 >More info	0.11 >More info	Ws 100mM NaCl	100mM NaCl	leaf	Original data	GEO bulk
123	AtNIGT1/HRS1 +CHX + DEX + Nitrate	0.50 >More info	-0.05 >More info	AtNIGT1/HRS1 +CHX - DEX + Nitrate			Original data
124	short 12-degree-	-0.57 >More info	0.12 >More info	control short			Original data	GEO bulk
125	E2Fa-Dpa	-0.58 >More info	0.13 >More info	WT			Original data	GEO bulk
126	CCA1-ox 6am non-polysomal	-0.10 >More info	0.51 >More info	WT 6am non-polysomal		aerial part	Original data
127	Col-0 2HS	-0.55 >More info	0.15 >More info	Col-0NS	2 h hypoxia stress (2HS)	7-day-old seedlings	Original data
128	eds16 whole leaf 1dpi	0.61 >More info	-0.21 >More info	Col whole leaf 1dpi		whole leaf	Original data	GEO bulk
129	ACC 0.5 h	0.52 >More info	-0.12 >More info	Mock 0.5 h			Original data	Basic hormone treatment of seedlings
130	shoot hypoxia total	-0.52 >More info	0.13 >More info	shoot control total			Original data	GEO bulk
131	empty vector IAA Treated	0.52 >More info	-0.14 >More info	empty vector mock			Original data	GEO bulk
132	siliques AtHb1 control	-0.14 >More info	0.52 >More info	siliques WT control	control	silique	Original data	GEO bulk
133	Mock pft1 leaf	-0.51 >More info	0.22 >More info	Mock Col-0 leaf	water	leaf	Original data	GEO bulk
134	ORS1 induced	-0.56 >More info	0.28 >More info	mock-induced		rosette leaves	Original data	GEO bulk
135	short 14-degree-	-0.51 >More info	0.24 >More info	control short			Original data	GEO bulk
136	hsfa1 quadruple mutant	0.52 >More info	-0.33 >More info	WT (Col-0)		whole seedling	Original data	GEO bulk
137	IAA7mII over-expressor IAA Treated	-0.51 >More info	0.69 >More info	empty vector IAA Treated			Original data	GEO bulk
138	Drought Stress 24 h (root)	0.57 >More info	-0.53 >More info	Stress mock 24 h (root)			Original data	Stress treatments