4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on sid2
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "sid2"  Help Download transcriptome of top 30
Score Experiment Correlation from
sid2		 Correlation to
sid2		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 sid2 1.00 >More info 1.00 >More info Col rosettes Original data GEO bulk
2 mil4 sid2 0.90 >More info 0.91 >More info Col rosettes Original data GEO bulk
3 mil4 0.89 >More info 0.89 >More info Col rosettes Original data GEO bulk
4 Pseudomonas 0.82 >More info 0.89 >More info Control pseudomonas treated whole seedling Original data GEO bulk
5 MIL4 ox 0.85 >More info 0.83 >More info Col Original data GEO bulk
6 pap1-D/tt4 0.78 >More info 0.79 >More info Col-0 aerial part Original data
7 MYB12OX/tt4 0.78 >More info 0.79 >More info Col-0 aerial part Original data
8 tt4 0.73 >More info 0.76 >More info Col-0 aerial part Original data
9 WOX1-1 0.72 >More info 0.75 >More info Col-0 aerial part Original data
10 TaFLS overexpression line (OE2) 0.74 >More info 0.71 >More info Col-0 Rosette leaves Original data
11 mil4 BTH 0.71 >More info 0.68 >More info Col BTH rosettes Original data GEO bulk
12 mkk2 control rep 0.70 >More info 0.68 >More info Col-0 Time 0 rep Original data GEO bulk
13 Shoot dark control 7h 0.68 >More info 0.68 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
14 mutant acs9B (single mutant) 0.72 >More info 0.64 >More info col control (single mutant) Original data GEO bulk
15 WT drought -0.62 >More info -0.72 >More info WT control All aerial tissue Original data GEO bulk
16 mutant acs2C (single mutant) 0.71 >More info 0.62 >More info col control (single mutant) Original data GEO bulk
17 sfr2 control -0.71 >More info -0.61 >More info WT control All aerial tissue Original data GEO bulk
18 fls1-3 0.67 >More info 0.64 >More info Col-0 Rosette leaves Original data
19 Col(gl) leaf 100mM NaCl 0.74 >More info 0.56 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
20 Col(gl) 100mM NaCl 0.74 >More info 0.56 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
21 Day Time Treatment -0.65 >More info -0.64 >More info Day Time Control 1hr white light pulse aerial rosette Original data
22 Night Time Treatment -0.62 >More info -0.65 >More info Night Time Control 1hr white light pulse aerial rosette Original data
23 WT-Dry -0.61 >More info -0.64 >More info WT-CK dehydration treatment 1h Original data
24 Shoot dark control 24h 0.64 >More info 0.60 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
25 6h volatiles Sm. R3089 0.54 >More info 0.70 >More info 6h untreated whole seedling Original data GEO bulk
26 Shoot submergence 24h 0.66 >More info 0.58 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
27 12h volatiles Sm. R3089 0.53 >More info 0.68 >More info 12h untreated whole seedling Original data GEO bulk
28 Col BTH 0.54 >More info 0.67 >More info Col rosettes Original data GEO bulk
29 shl-2 Pool 0.63 >More info 0.58 >More info Ler Pool seedling Original data GEO bulk
30 arr10 arr12 -0.59 >More info -0.58 >More info WT Original data GEO bulk
31 pap1-D 0.56 >More info 0.61 >More info Col-0 aerial part Original data
32 Col-0 DEX Shade 0.66 >More info 0.51 >More info Col-0 DEX WL seedlings Original data
33 sim smr1 0.53 >More info 0.64 >More info WT seedling Original data GEO bulk
34 Atss3 Light4 -0.55 >More info -0.61 >More info Atss3 Dark0.5 Original data GEO bulk
35 35S:GIF 0.61 >More info 0.55 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
36 M6PR transgenic leaf 0mM NaCl 0.59 >More info 0.57 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
37 mkk1 control rep 0.64 >More info 0.49 >More info Col-0 Time 0 rep Original data GEO bulk
38 seedling 24h after Gamma atm-1 -0.54 >More info -0.57 >More info seedling day 2 unirradiated atm-1 24h Original data
39 Atss3 Light1 -0.47 >More info -0.64 >More info Atss3 Dark0.5 Original data GEO bulk
40 seedling 1.5h after HZE atm-1 0.47 >More info 0.63 >More info seedling day 1 unirradiated atm-1 1.5h Original data
41 Leaf systemic -0.46 >More info -0.63 >More info Leaf control vegetative leaf Original data GEO bulk
42 petiole in D 0.51 >More info 0.57 >More info petiole in WL petioles Original data GEO bulk
43 ADD3 -0.54 >More info -0.53 >More info WT aerial part Original data GEO bulk
44 WT hypoxia 0.53 >More info 0.54 >More info WT normoxia whole rosette Original data
45 Dark 1day ivd 0.58 >More info 0.49 >More info 0h ivd Original data
46 mkk2 24h BTH rep 0.53 >More info 0.53 >More info Col-0 24h BTH rep Original data GEO bulk
47 Rsch 3d 0.53 >More info 0.53 >More info Rsch CA Leaves Original data
48 mkk1 24h BTH rep 0.59 >More info 0.47 >More info Col-0 24h BTH rep Original data GEO bulk
49 seedling 24h after Gamma WT -0.58 >More info -0.48 >More info seedling day 2 unirradiated WT 24h Original data
50 Dark 6h hml 0.58 >More info 0.48 >More info 0h hml Original data
51 TaFLS overexpression line (OE1) 0.62 >More info 0.44 >More info Col-0 Rosette leaves Original data
52 Whole root - S 3H -0.54 >More info -0.52 >More info Whole root - S 0H Original data GEO bulk
53 sfr3 control -0.49 >More info -0.57 >More info WT control All aerial tissue Original data GEO bulk
54 camta1 leaf water 0.55 >More info 0.50 >More info Col-0 leaf water leaf Original data GEO bulk
55 Dark 1day hml 0.57 >More info 0.48 >More info 0h hml Original data
56 Dark 6h wt 0.57 >More info 0.48 >More info 0h wt Original data
57 cpr5 sim smr1 0.47 >More info 0.58 >More info WT seedling Original data GEO bulk
58 Col(gl) 0mM NaCl 0.52 >More info 0.52 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
59 Col(gl) leaf 0mM NaCl 0.52 >More info 0.52 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
60 gun5 control -0.49 >More info -0.55 >More info Col-0 control Original data GEO bulk
61 Col-0 INA 48h -0.41 >More info -0.63 >More info Col-0 MOCK 48h Original data GEO bulk
62 downy mildew cotyledons late stage -0.42 >More info -0.62 >More info mock inoculated Cotyledons Original data GEO bulk
63 CDB1-Knockout 0.36 >More info 0.68 >More info WT Original data GEO bulk
64 E.orontii Infection 6 h 0.54 >More info 0.49 >More info Uninfection 6 h Original data Elicitor treatments
65 Dark 6h ivd 0.49 >More info 0.54 >More info 0h ivd Original data
66 Te 1d 0.48 >More info 0.55 >More info Te CA Leaves Original data
67 IRP1-OE-Ctrl--shoot -0.65 >More info -0.37 >More info COL-0-Ctrl--shoot shoot Original data
68 Col-0 Mock Shade 0.72 >More info 0.29 >More info Col-0 Mock WL seedlings Original data
69 Cocultivation 8 hrs leaf 0.54 >More info 0.47 >More info Mock cocultivation 8 hrs leaf Leaf Original data
70 Mutant lfy-12(shoot apex) -0.55 >More info -0.46 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
71 erf104-ko H2O 4h -0.51 >More info -0.50 >More info Col-0 H2O 4h Original data GEO bulk
72 MIL4 ox BTH 0.50 >More info 0.51 >More info Col BTH Original data GEO bulk
73 leaf blade in D 0.49 >More info 0.52 >More info leaf blade in WL leaf blades Original data GEO bulk
74 60m light -0.43 >More info -0.58 >More info before light whole seedlings Original data GEO bulk
75 Dark 3day hml 0.55 >More info 0.45 >More info 0h hml Original data
76 mpk6-ko H2O 4h -0.37 >More info -0.63 >More info Col-0 H2O 4h Original data GEO bulk
77 camta1-2 0.44 >More info 0.56 >More info Col-0-WT Original data GEO bulk
78 tmm1-inflorescence-tips -0.35 >More info -0.64 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
79 NahG 0.38 >More info 0.61 >More info Col-0 Leaves Original data GEO bulk
80 Col-0 WT HL 3h -0.57 >More info -0.41 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
81 det2 light-dark 0.56 >More info 0.42 >More info det2 light light-dark Original data GEO bulk
82 bio4-1 mutant watered00µM biotin leaves 0.57 >More info 0.41 >More info bio4-1 mutant leaves leaves Original data GEO bulk
83 Dark 1day wt 0.54 >More info 0.44 >More info 0h wt Original data
84 Leaf wounded -0.52 >More info -0.46 >More info Leaf control vegetative leaf Original data GEO bulk
85 WT (Col-0) inflorescence drought day 3 -0.50 >More info -0.48 >More info WT (Col-0) inflorescence well-watered day 3 Unopen flower buds Original data GEO bulk
86 A. halleri 0.52 >More info 0.46 >More info A. thaliana mature leaves before flowering Original data GEO bulk
87 Root submergence 7h 0.55 >More info 0.43 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
88 A. lyrata 0.46 >More info 0.52 >More info A. thaliana mature leaves before flowering Original data GEO bulk
89 Col-0 DCA 48h -0.39 >More info -0.58 >More info Col-0 MOCK 48h Original data GEO bulk
90 Cd 18h root -0.41 >More info -0.56 >More info WT-Untreated Root Original data GEO bulk
91 Dark 3day wt 0.52 >More info 0.44 >More info 0h wt Original data
92 mutant acs1A (single mutant) 0.67 >More info 0.29 >More info col control (single mutant) Original data GEO bulk
93 psad1-1 stn7-1 0.51 >More info 0.45 >More info Col-0 rosette leaves Original data GEO bulk
94 HARAP aerobic 0.32 >More info 0.64 >More info WT aerobic aerobic Original data GEO bulk
95 Dark 2day wt 0.54 >More info 0.41 >More info 0h wt Original data
96 green tissue gl3 egl3 0.66 >More info 0.27 >More info green tissue WT L. er Original data GEO bulk
97 M6PR transgenic leaf 100mM NaCl 0.25 >More info 0.67 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
98 Heat shock optimum 0.27 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
99 ptpks2 -0.25 >More info -0.65 >More info Col-WT leaves Original data GEO bulk
100 aerial organ callus inducing medium 12 h 0.38 >More info 0.52 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
101 oas-a1.1 root -0.34 >More info -0.55 >More info WT-Untreated Root Original data GEO bulk
102 Dark 2day hml 0.53 >More info 0.36 >More info 0h hml Original data
103 Mutant lwd1_lwd2 0.24 >More info 0.65 >More info Wildtype for phy mutants Original data GEO bulk
104 LWD1 and LWD2 in photoperiod regulation (lwd1lwd2
)		 0.24 >More info 0.65 >More info LWD1 and LWD2 in photoperiod regulation (wt ) Original data GEO bulk
105 sng1 UV -0.39 >More info -0.50 >More info UV aerial region Original data GEO bulk
106 Pst-DC3000(hrpA)-4hpi 0.22 >More info 0.67 >More info Pst-DC3000-4hpi Original data GEO bulk
107 cca1-lhy 30m light 0.36 >More info 0.52 >More info 30m light whole seedlings Original data GEO bulk
108 G3P -0.27 >More info -0.61 >More info Mock distal leaves Original data GEO bulk
109 swn-7 0.33 >More info 0.54 >More info Col whole plant Original data GEO bulk
110 Col 3d 0.34 >More info 0.53 >More info Col CA Leaves Original data
111 gapcp1gapcp2 -0.59 >More info -0.28 >More info WT Original data GEO bulk
112 toc1-1-85hr -0.28 >More info -0.59 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
113 camta3-2 -0.29 >More info -0.56 >More info WT Original data GEO bulk
114 hda9 dryseed -0.33 >More info -0.52 >More info Col dryseed dry seeds Original data
115 S5 -0.23 >More info -0.62 >More info WT Original data GEO bulk
116 A. thaliana-A. lyrata hybrid 0.28 >More info 0.57 >More info A. thaliana mature leaves before flowering Original data GEO bulk
117 essp3/brm5 mutant -0.54 >More info -0.30 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
118 Mutant NahG(leaf) 0.32 >More info 0.52 >More info Col-0 (leaf) Original data GEO bulk
119 pad4-est1b-1-doublemutant 0.31 >More info 0.53 >More info pad4-mutant developed rosette leaves Original data GEO bulk
120 dde2-2 24hpi A. brassicicola -0.31 >More info -0.53 >More info Col-0 9 hpi A. brassicicola 3rd-5th true leaves Original data
121 Root dark control 7h 0.54 >More info 0.29 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
122 E.orontii Infection 3 day 0.50 >More info 0.33 >More info Uninfection 3 day Original data Elicitor treatments
123 Laer pretreat GA Flg22 1h 0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
124 Shoot apex inflorescence (after bolting) 0.16 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
125 4C 2h(SOIL) -0.17 >More info -0.64 >More info 4C 0h(SOIL) Original data GEO bulk
126 sex1-3 0.23 >More info 0.58 >More info Col-WT leaves Original data GEO bulk
127 COL-0-Fe--shoot -0.55 >More info -0.25 >More info COL-0-Ctrl--shoot shoot Original data
128 Mutant ag-12(flower) -0.30 >More info -0.50 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
129 cca1-lhy before light 0.51 >More info 0.28 >More info before light whole seedlings Original data GEO bulk
130 over-tAPX -0.19 >More info -0.60 >More info WT Col Original data GEO bulk
131 seed germinating in countinuous light 24h SL 0.11 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
132 ga1-3 scl3-1 -0.51 >More info -0.25 >More info ga1-3 whole root Original data
133 phr1 phl1 Shoot-Pi 0.54 >More info 0.22 >More info WT Shoot-Pi shoots Original data GEO bulk
134 sfr6 control -0.53 >More info -0.23 >More info WT control All aerial tissue Original data GEO bulk
135 bri1-116 0.03 >More info 0.73 >More info Col seedling Original data GEO bulk
136 4C 1h -0.10 >More info -0.64 >More info 4C 0h Original data GEO bulk
137 L2.4 mutant -0.50 >More info -0.23 >More info Wt Original data GEO bulk
138 phyABCDE Rc50 -0.17 >More info -0.55 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
139 Shoot submergence 7h 0.70 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
140 Total RNA 35S:AtCSP1-FH1 cold -0.10 >More info -0.60 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
141 Col0-PsmES4326-24hpi 0.08 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
142 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
143 phyB mutant 16C 4hrs 0.61 >More info 0.05 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
144 short 12-degree- -0.15 >More info -0.51 >More info control short Original data GEO bulk
145 35S::RSL4 0.16 >More info 0.50 >More info Col-0 Control root Original data GEO bulk
146 phyB mutant 16C 10hrs -0.58 >More info -0.08 >More info 16C 10h whole plant excluding roots Original data GEO bulk
147 3x(m) -0.11 >More info -0.54 >More info 2x two week old seedlings Original data
148 gapcp1gapcp2 ABA 0.07 >More info 0.58 >More info WT ABA ABA seedling Original data GEO bulk
149 abi1 hypocotyl -0.14 >More info -0.50 >More info Ler hypocotyl hypocotyl Original data GEO bulk
150 WT Shoot-Pi -0.50 >More info -0.13 >More info WT Shoot+Pi shoots Original data GEO bulk
151 ahg2-1sid2-2 -0.50 >More info -0.11 >More info WT (Col) control Original data GEO bulk
152 short 17-degree- -0.11 >More info -0.50 >More info control short Original data GEO bulk
153 opr3 OPDA 0.5 h 0.00 >More info -0.61 >More info opr3 0 h Original data GEO bulk
154 sng1 -0.03 >More info -0.56 >More info WT aerial region Original data GEO bulk
155 Dark 2day ivd 0.58 >More info -0.01 >More info 0h ivd Original data
156 Apex mir-319b 17DAS -0.50 >More info -0.06 >More info Apex Col 14DAS Original data GEO bulk
157 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
158 Dark 0.04 >More info 0.50 >More info Control Original data GEO bulk
159 nbp35-3/- 0.57 >More info -0.03 >More info WT whole seedling Original data GEO bulk
160 Leafminer damaged seedlings -0.06 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
161 WT roots - Fe -0.04 >More info 0.52 >More info WT roots + Fe Roots Original data GEO bulk
162 siliques AtHb1 control -0.05 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
163 Genotoxic Stress 3 h (shoot) -0.50 >More info 0.04 >More info Stress mock 3 h (shoot) Original data Stress treatments
164 Mock pft1 leaf -0.60 >More info 0.16 >More info Mock Col-0 leaf water leaf Original data GEO bulk