4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on COL-0-Fe--root
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "COL-0-Fe--root"  Help Download transcriptome of top 30
Score Experiment Correlation from
COL-0-Fe--root		 Correlation to
COL-0-Fe--root		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 COL-0-Fe--root 1.00 >More info 1.00 >More info COL-0-Ctrl--root root Original data
2 Col -Fe 0.88 >More info 0.91 >More info Col-es root Original data GEO bulk
3 whole roots -Fe 48 hour 0.79 >More info 0.78 >More info whole roots standard Original data GEO bulk
4 whole roots -Fe 72 hour 0.79 >More info 0.77 >More info whole roots standard Original data GEO bulk
5 Fe starvation 72 h 0.79 >More info 0.77 >More info Control Original data GEO bulk
6 root longitudinal zone-4 -Fe 0.65 >More info 0.84 >More info root longitudinal zone-4 standard Original data GEO bulk
7 sta1 0.64 >More info 0.78 >More info WT Original data GEO bulk
8 Whole root - S 3H 0.62 >More info 0.80 >More info Whole root - S 0H Original data GEO bulk
9 root longitudinal zone-2 -Fe 0.56 >More info 0.84 >More info root longitudinal zone-2 standard Original data GEO bulk
10 root longitudinal zone-3 -Fe 0.59 >More info 0.80 >More info root longitudinal zone-3 standard Original data GEO bulk
11 WT roots - Fe 0.63 >More info 0.76 >More info WT roots + Fe Roots Original data GEO bulk
12 COL-0-Fe--shoot 0.60 >More info 0.76 >More info COL-0-Ctrl--shoot shoot Original data
13 Whole root - S 12H 0.65 >More info 0.70 >More info Whole root - S 0H Original data GEO bulk
14 whole roots -Fe 24hour 0.61 >More info 0.72 >More info whole roots standard Original data GEO bulk
15 Fe starvation 24 h 0.61 >More info 0.72 >More info Control Original data GEO bulk
16 Tsu -Fe 24h Roots 0.58 >More info 0.74 >More info Tsu +Fe 24h Roots Original data GEO bulk
17 Tsu-1 -Fe 24h 0.58 >More info 0.74 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
18 Whole root - low pH 24H 0.60 >More info 0.70 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
19 Tsu-1 -Fe 48h 0.60 >More info 0.69 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
20 Tsu -Fe 48h Roots 0.60 >More info 0.69 >More info Tsu +Fe 24h Roots Original data GEO bulk
21 Whole root - low pH 6H 0.56 >More info 0.72 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
22 Whole root - low pH 12H 0.55 >More info 0.72 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
23 gapcp1gapcp2 0.72 >More info 0.54 >More info WT Original data GEO bulk
24 MG132 3 h 0.50 >More info 0.75 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
25 PNO8 3 h 0.54 >More info 0.68 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
26 BLM 0.62 >More info 0.53 >More info CK BLM seedling Original data
27 IRP1-OE-Ctrl--root 0.54 >More info 0.60 >More info COL-0-Ctrl--root root Original data
28 ubc13A -Fe -0.63 >More info -0.51 >More info Col -Fe root Original data GEO bulk
29 seedling 24h after Gamma atm-1 0.50 >More info 0.62 >More info seedling day 2 unirradiated atm-1 24h Original data
30 Ibuprofen 3 h 0.48 >More info 0.62 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
31 K starvation (root) 0.51 >More info 0.57 >More info Ws (root) Original data GEO bulk
32 9m.KCl 0.40 >More info 0.68 >More info To. KCl 14 day old Roots Original data GEO bulk
33 ahg2-1sid2-2 0.43 >More info 0.64 >More info WT (Col) control Original data GEO bulk
34 ANOXIA -0.31 >More info -0.76 >More info ANOXIA+SUCROSE Original data GEO bulk
35 Root -K 0.51 >More info 0.55 >More info Control-root Original data GEO bulk
36 5-Triiodobenzoic acid3 h 0.42 >More info 0.64 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
37 iron minus 6 h 0.32 >More info 0.74 >More info iron +6 h root Original data GEO bulk
38 iron minus 24h 0.41 >More info 0.65 >More info iron +24h root Original data GEO bulk
39 (Ws-2)+100 uM As 0.49 >More info 0.56 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
40 BLM+INA 0.60 >More info 0.44 >More info CK BLM and INA seedling Original data
41 ahg1-1 0.32 >More info 0.72 >More info ABA control Original data GEO bulk
42 SA 0.46 >More info 0.56 >More info WT mock Whole seedling Original data GEO bulk
43 Whole root - low pH 3H 0.38 >More info 0.64 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
44 ahg2-1 0.52 >More info 0.49 >More info WT (Col) control Original data GEO bulk
45 elf3-7-16ºC 0.45 >More info 0.56 >More info WT-16ºC Original data GEO bulk
46 root longitudinal zone-1 -Fe 0.51 >More info 0.49 >More info root longitudinal zone-1 standard Original data GEO bulk
47 6-trichlorophenoxyacetic acid 3 h 0.49 >More info 0.51 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
48 OXUPB1-2 elongation zone 0.31 >More info 0.69 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
49 nas4x roots + Fe 0.44 >More info 0.55 >More info WT roots + Fe Roots Original data GEO bulk
50 Imidazolinone EC50 0.36 >More info 0.62 >More info Carrier (Imidazolinone) Original data GEO bulk
51 seedling 24h after Gamma WT 0.36 >More info 0.62 >More info seedling day 2 unirradiated WT 24h Original data
52 Glyphosate EC50 0.32 >More info 0.65 >More info Carrier (Glyphosate) Original data GEO bulk
53 35S::PI ap3-3 35S::AP-GR +DEX 0.28 >More info 0.68 >More info 0hr DEX Original data GEO bulk
54 cdpk6-yfp 0.38 >More info 0.58 >More info Kan seedlings Original data GEO bulk
55 Seedling KUA1-IOX est 0.35 >More info 0.60 >More info Seedling KUA1-IOX mock Original data
56 sdg2 0.52 >More info 0.42 >More info wt seedling Original data GEO bulk
57 Selenate (root) 0.42 >More info 0.51 >More info Ws (root) Original data GEO bulk
58 1h +Pi -0.42 >More info -0.51 >More info 1h -Pi root Original data GEO bulk
59 Root Selenate 0.42 >More info 0.51 >More info Root control 40 micromolar selenate Root Original data GEO bulk
60 cat2-2; 8h switch to ambient CO2 concentrations; 0.13 >More info 0.78 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
61 col 24h4c set4 0.40 >More info 0.51 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
62 35S::LFY 0.41 >More info 0.50 >More info Landsberg erecta seedlings Original data GEO bulk
63 dicamba 0.39 >More info 0.51 >More info WT mock whole seedling Original data GEO bulk
64 inhibitor A Treated 0.34 >More info 0.55 >More info Negative Control Original data GEO bulk
65 PAHs stress 0.51 >More info 0.38 >More info exp control phenanthrene whole plants Original data GEO bulk
66 Col-0-3h IAA 0.50 >More info 0.38 >More info Col-0-0h IAA whole plant Original data GEO bulk
67 12h volatiles Sm. R3089 -0.36 >More info -0.52 >More info 12h untreated whole seedling Original data GEO bulk
68 WT cold 0.31 >More info 0.57 >More info WT control All aerial tissue Original data GEO bulk
69 hira-root -0.20 >More info -0.67 >More info WT-root root Original data
70 msh1 recA3 untreated 0.28 >More info 0.59 >More info WT untreated above-ground parts Original data GEO bulk
71 Whole root - S 48H 0.35 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
72 AgNO3 3 h 0.33 >More info 0.53 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
73 Laer pretreat GA Flg22 1h 0.15 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
74 oas-a1.1 root 0.35 >More info 0.51 >More info WT-Untreated Root Original data GEO bulk
75 tt4 UV -0.20 >More info -0.65 >More info UV aerial region Original data GEO bulk
76 6h +Pi -0.20 >More info -0.65 >More info 6h -Pi root Original data GEO bulk
77 Triazolopyrimidine EC50 0.31 >More info 0.54 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
78 Differentiation 12h 0.30 >More info 0.55 >More info Differentiation 0h leaves Original data
79 ws 24h4c q8ws 0.34 >More info 0.51 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
80 bbx24 in Simulated Shade -0.30 >More info -0.55 >More info WT in simulated shade shade seedling Original data
81 inhibitor B Treated 0.35 >More info 0.50 >More info Negative Control Original data GEO bulk
82 grf1/grf2/grf3 0.28 >More info 0.56 >More info WS Original data GEO bulk
83 TNT-seedlings 0.27 >More info 0.57 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
84 IRP1-OE-Fe--root -0.55 >More info -0.27 >More info COL-0-Fe--root root Original data
85 Phytoprostane A1 4 h 0.28 >More info 0.54 >More info Col-0 Original data GEO bulk
86 oas-a1.1 Cd 18h 0.26 >More info 0.56 >More info Cd 18h root Root Original data GEO bulk
87 4x -0.27 >More info -0.55 >More info 2x two week old seedlings Original data
88 gun1gun5 far-red pretreated -0.29 >More info -0.52 >More info WT far-red pretreated Original data GEO bulk
89 ga1-3 scl3-1 0.31 >More info 0.50 >More info ga1-3 whole root Original data
90 Col0-PsmES4326-24hpi 0.19 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
91 Sulfometuron EC50 0.28 >More info 0.52 >More info Carrier Original data GEO bulk
92 Col BTH 0.13 >More info 0.67 >More info Col rosettes Original data GEO bulk
93 seedling 24h after HZE atm-1 0.26 >More info 0.54 >More info seedling day 2 unirradiated atm-1 24h Original data
94 Elevated CO2 LIMITING N NIGHT 0.23 >More info 0.57 >More info Elevated CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
95 root stele pH4.6 0.19 >More info 0.60 >More info root stele pH5.7 Original data GEO bulk
96 8hr-pH4.5 0.21 >More info 0.58 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
97 Transgenic LEC2GR Seedling 1h Dex 0.23 >More info 0.55 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
98 Primisulfuron EC50 0.25 >More info 0.53 >More info Carrier (primisulfuron) Original data GEO bulk
99 Chemically 0.21 >More info 0.57 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
100 seedling 12h after Gamma atm-1 0.50 >More info 0.27 >More info seedling day 1 unirradiated atm-1 12h Original data
101 Light 0.23 >More info 0.54 >More info Control Original data GEO bulk
102 S58-2 0.24 >More info 0.53 >More info wt Original data GEO bulk
103 Elevated CO2 LIMITING N DAY 0.19 >More info 0.58 >More info Elevated CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
104 Ambient CO2 LIMITING N NIGHT 0.18 >More info 0.59 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
105 root - 01% oxygen - 48h 0.17 >More info 0.59 >More info root - 21% oxygen - 48h Original data GEO bulk
106 Heat shock optimum 0.11 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
107 rcf1-1 cold 24h 0.17 >More info 0.58 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
108 NJ15 0.16 >More info 0.59 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
109 Cor 10h 0.23 >More info 0.51 >More info Mock 10h Cor Original data GEO bulk
110 24h +Pi -0.21 >More info -0.52 >More info 24h -Pi root Original data GEO bulk
111 red illumination +lincomycin 0.22 >More info 0.51 >More info red illumination -lincomycin Original data GEO bulk
112 seedling 3h after Gamma WT 0.20 >More info 0.53 >More info seedling day 1 unirradiated WT 3h Original data
113 root - 08% oxygen - 30min 0.17 >More info 0.54 >More info root - 21% oxygen - 30min Original data GEO bulk
114 root endodermis and quiescent center pH4.6 0.16 >More info 0.55 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
115 penta mutant (higher order mutant) -0.21 >More info -0.50 >More info col control (higher order mutant) Original data GEO bulk
116 Split KNO3 roots - 2days -0.14 >More info -0.56 >More info Split KCl roots - 2days 5mM KNO3 on ONE side for 2 days roots Original data GEO bulk
117 ani1 T0.5 -0.16 >More info -0.54 >More info WT T0.5 root tissue Original data GEO bulk
118 IAA7mII over-expressor IAA Treated 0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
119 ptpks2 0.10 >More info 0.60 >More info Col-WT leaves Original data GEO bulk
120 Hydrogen Peroxide 500 uM 0.15 >More info 0.54 >More info Control RB and PER Hydrogen Peroxide Original data
121 rao2 H2O2 3h -0.17 >More info -0.51 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
122 bri1-116 -0.05 >More info 0.73 >More info Col seedling Original data GEO bulk
123 Shoot -Cs 0.08 >More info 0.58 >More info Control-shoot Original data GEO bulk
124 Mutant axr3-1 (IAA) 0.15 >More info 0.50 >More info Col (IAA) Original data GEO bulk
125 Root -Cs 0.13 >More info 0.52 >More info Control-root Original data GEO bulk
126 short 17-degree- 0.11 >More info 0.53 >More info control short Original data GEO bulk
127 OXUPB1-2 meristematic zone 0.13 >More info 0.51 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
128 L2.4 mutant 0.13 >More info 0.51 >More info Wt Original data GEO bulk
129 root - 04% oxygen - 48h 0.10 >More info 0.53 >More info root - 21% oxygen - 48h Original data GEO bulk
130 tmm1-inflorescence-tips 0.13 >More info 0.50 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
131 30m light 0.11 >More info 0.51 >More info before light whole seedlings Original data GEO bulk
132 seed germinating in countinuous light 24h SL -0.06 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
133 GA3 0.5 h (ga1) -0.09 >More info -0.52 >More info Mock 0.5 h (ga1) Original data Basic hormone treatment of seedlings
134 plant (Col-0) 4h phytoprostane A1 0.11 >More info 0.50 >More info plant (tga2-5-6) 4h control Original data GEO bulk
135 dark +lincomycin 0.11 >More info 0.50 >More info dark -lincomycin Original data GEO bulk
136 Leafminer damaged seedlings 0.04 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
137 siliques AtHb1 control 0.04 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
138 WT 3h -P -0.00 >More info 0.54 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
139 swn-7 -0.03 >More info -0.50 >More info Col whole plant Original data GEO bulk
140 Red/FR Light45min -0.01 >More info 0.53 >More info FarRed Light 45min Original data Light treatments
141 Split KNO3 roots - 8hours 0.02 >More info -0.54 >More info Split KCl roots - 8hours 5mM KNO3 on ONE side for 8 hours roots Original data GEO bulk
142 Shoot apex inflorescence (after bolting) -0.14 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
143 toc1-1-49hr 0.01 >More info 0.50 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
144 myb3 myb3r4d 0.01 >More info 0.50 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
145 FarRed Light 45min 0.01 >More info -0.51 >More info White Light 45min Original data Light treatments
146 Col-0 DCA 6d 0.01 >More info -0.50 >More info Col-0 MOCK 6d Original data GEO bulk
147 CCA1-ox 6am non-polysomal -0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data