4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr red light
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List of experiments correlated with "2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr red light "  Help Download transcriptome of top 30
Score Experiment Correlation from
2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr red light 		Correlation to
2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr red light 		Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		1.00 >More info 1.00 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
2 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.91 >More info 0.90 >More info 2d dark-grown WT seedling Original data GEO bulk
3 WT Red light 18h 0.75 >More info 0.72 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
4 ABA control -0.61 >More info -0.79 >More info No ABA control Original data GEO bulk
5 clf-28 swn-7 -0.66 >More info -0.69 >More info Col whole plant Original data GEO bulk
6 pif3 Dark 0h 0.56 >More info 0.78 >More info WT Dark 0h etiolated seedling Original data GEO bulk
7 phyB Dark 0.65 >More info 0.68 >More info WT(Ler) Dark Original data GEO bulk
8 gul2-1 mutant -0.71 >More info -0.61 >More info WT 7 day-old whole seedlings Original data
9 phyAphyB Dark -0.61 >More info -0.67 >More info phyB Dark Original data GEO bulk
10 hsfa1 quadruple mutant -0.57 >More info -0.70 >More info WT (Col-0) whole seedling Original data GEO bulk
11 pif3 Dark 1h 0.59 >More info 0.67 >More info WT Dark 1h etiolated seedling Original data GEO bulk
12 WT light 0.69 >More info 0.57 >More info WT dark Original data GEO bulk
13 Ws seedlings -0.53 >More info -0.69 >More info ged1 seedlings Original data GEO bulk
14 ged1 seedlings 0.53 >More info 0.69 >More info Ws seedlings Original data GEO bulk
15 mdh -0.55 >More info -0.66 >More info Col Original data GEO bulk
16 Dark 4 h pls RedLight 1min 0.49 >More info 0.72 >More info Dark 4 h Original data Light treatments
17 gul2-1 bri1-5 mutant -0.61 >More info -0.59 >More info WT 7 day-old whole seedlings Original data
18 phr1 phl1 Root-Pi -0.58 >More info -0.61 >More info WT Shoot+Pi roots Original data GEO bulk
19 eif3h -0.66 >More info -0.52 >More info WT Original data GEO bulk
20 piffq 2d WL -0.52 >More info -0.66 >More info WT 2d WL whole seedling Original data GEO bulk
21 fri-flc -0.57 >More info -0.60 >More info WT Original data GEO bulk
22 Col-7 Sucrose -0.60 >More info -0.57 >More info col-7 Original data GEO bulk
23 aerial organ callus inducing medium 96 h -0.53 >More info -0.64 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
24 MPK6 ox Shoot Hypoxia 0.42 >More info 0.75 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
25 ws 24h4c q8ws -0.56 >More info -0.60 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
26 bri1-116 0.43 >More info 0.73 >More info Col seedling Original data GEO bulk
27 WT(Ler) Rc50 0.46 >More info 0.69 >More info WT(Ler) Dark Original data GEO bulk
28 phr1 Shoot-Pi 0.53 >More info 0.61 >More info WT Root-Pi shoots Original data GEO bulk
29 WT Seedling BL 0.55 >More info 0.59 >More info WT Seedling Dark Original data GEO bulk
30 phyABCDE Dark -0.48 >More info -0.66 >More info WT Dark Dark whole seedling Original data GEO bulk
31 WT Rc50 0.46 >More info 0.67 >More info WT Dark red light whole seedling Original data GEO bulk
32 eif3h non-polysome -0.66 >More info -0.47 >More info WT non-polysome Original data GEO bulk
33 MPK6 ox Root Hypoxia 0.54 >More info 0.59 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
34 pab polysome -0.38 >More info -0.75 >More info WT polysome seedling shoot/aerial seedling Original data
35 cop1 Seedling Dark 0.47 >More info 0.65 >More info WT Seedling Dark Original data GEO bulk
36 Estradiol4 days -0.46 >More info -0.65 >More info Col Original data GEO bulk
37 estradiol induced LEC1 -0.46 >More info -0.65 >More info control Original data GEO bulk
38 Col-0 Root 100 mM ATP 30 min 0.59 >More info 0.52 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
39 eif3h polysome -0.66 >More info -0.43 >More info WT polysome Original data GEO bulk
40 CabpBVR2 -0.54 >More info -0.54 >More info WT Original data GEO bulk
41 ahg1-1 -0.37 >More info -0.71 >More info ABA control Original data GEO bulk
42 35SpBVR3 -0.56 >More info -0.51 >More info WT Original data GEO bulk
43 WT(Ler) Rc15 0.39 >More info 0.68 >More info WT(Ler) Dark Original data GEO bulk
44 hsfa1 quadruple mutant heat shock -0.50 >More info -0.56 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
45 sicy-192 cotyledons -0.51 >More info -0.54 >More info WT cotyledons cotyledons Original data
46 rosettes myoox drought -0.55 >More info -0.50 >More info rosettes myoox watered Original data GEO bulk
47 Dark 4 h pls UV-A 5 min 0.47 >More info 0.58 >More info Dark 4 h Original data Light treatments
48 aerial organ callus inducing medium 48 h -0.48 >More info -0.57 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
49 atmyc2 cop1 Seedling Dark 0.53 >More info 0.51 >More info WT Seedling Dark Original data GEO bulk
50 GA4 3 h (ga1 seed) -0.52 >More info -0.51 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
51 col 24h4c set4 -0.51 >More info -0.52 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
52 Cold Stress 24 h (shoot) -0.49 >More info -0.54 >More info Stress mock 24 h (shoot) Original data Stress treatments
53 short 12-degree- -0.37 >More info -0.66 >More info control short Original data GEO bulk
54 rosettes WT drought -0.54 >More info -0.48 >More info rosettes WT watered Original data GEO bulk
55 Col-0 low oxygen -0.51 >More info -0.49 >More info Col-0 Original data GEO bulk
56 35S-MIF1 light grown -0.46 >More info -0.54 >More info Light-grown WT control Original data GEO bulk
57 Salt Stress 24 h (shoot) -0.49 >More info -0.50 >More info Stress mock 24 h (shoot) Original data Stress treatments
58 short 14-degree- -0.40 >More info -0.59 >More info control short Original data GEO bulk
59 HopZ1a treated -0.47 >More info -0.52 >More info col Original data GEO bulk
60 tt4 0.32 >More info 0.67 >More info WT aerial region Original data GEO bulk
61 Col-0 norflurazon -0.48 >More info -0.50 >More info Col-0 control Original data GEO bulk
62 phyABDE Dark -0.40 >More info -0.58 >More info WT Dark Dark whole seedling Original data GEO bulk
63 ACN1-2 Sucrose 0.41 >More info 0.57 >More info Col-7 Sucrose Original data GEO bulk
64 low water potential -0.56 >More info -0.41 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
65 aerial organ callus inducing medium 24h -0.47 >More info -0.50 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
66 eto1-4 +370 0.56 >More info 0.40 >More info eto1-4 whole seedling Original data GEO bulk
67 phyABDE 4-day dark- 2 hours Rc50 -0.55 >More info -0.41 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
68 Osmotic Stress 24 h (shoot) -0.50 >More info -0.45 >More info Stress mock 24 h (shoot) Original data Stress treatments
69 pif4pif5 mut 1h FR 0.43 >More info 0.52 >More info WT 1h FR Original data GEO bulk
70 etiolated cop1BBX22-GFPox 0.42 >More info 0.52 >More info etiolated Col-0 whole seedlings Original data GEO bulk
71 short 10-degree- -0.40 >More info -0.53 >More info control short Original data GEO bulk
72 4C 24h -0.39 >More info -0.54 >More info 4C 0h Original data GEO bulk
73 Pto inoculated -0.51 >More info -0.42 >More info col Original data GEO bulk
74 35S::Zat12+H2O2 -0.42 >More info -0.51 >More info WT+H2O2 H2O2 Original data GEO bulk
75 aerial organ callus inducing medium 12 h -0.40 >More info -0.52 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
76 35S:VND7-VP16-GR+CHX -0.40 >More info -0.51 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
77 SLWF infested -0.38 >More info -0.53 >More info SLWF uninfested rosette tissue Original data GEO bulk
78 ataf1-1 mutant Col-0 Bgh inoculated -0.41 >More info -0.50 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
79 col-5 hrpA 12h -0.41 >More info -0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
80 csn4-1 dark -0.54 >More info -0.36 >More info WT light Original data GEO bulk
81 eto1-4 +393 0.55 >More info 0.35 >More info eto1-4 whole seedling Original data GEO bulk
82 short 17-degree- -0.32 >More info -0.58 >More info control short Original data GEO bulk
83 2d red light grown pif1pif3pif4pif5 (pifq) mutant 0.31 >More info 0.59 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
84 short 8-degree- -0.37 >More info -0.52 >More info control short Original data GEO bulk
85 WT Col-0 Bgh inoculated -0.39 >More info -0.50 >More info WT Col-0 Un-inoculated Original data GEO bulk
86 E.coli 0157 H7 7h -0.26 >More info -0.63 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
87 pif4pif5 mut 24h FR 0.34 >More info 0.53 >More info WT 24h FR Original data GEO bulk
88 dsr1 0.32 >More info 0.55 >More info WT mock Whole seedling Original data GEO bulk
89 csn5 (csn5a-2 csn5b) light -0.50 >More info -0.37 >More info WT light Original data GEO bulk
90 E.coli TUV86 2 fliC 7h -0.34 >More info -0.52 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
91 Seedling KUA1-IOX est -0.32 >More info -0.54 >More info Seedling KUA1-IOX mock Original data
92 rosettes drought -0.50 >More info -0.36 >More info rosettes watered Original data GEO bulk
93 Shoot apex inflorescence (after bolting) 0.21 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
94 sta1 -0.27 >More info -0.59 >More info WT Original data GEO bulk
95 Shoot -Cs -0.34 >More info -0.51 >More info Control-shoot Original data GEO bulk
96 shoot-10 μM DEX- 12 hr 0.27 >More info 0.56 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
97 toc1-1-85hr 0.22 >More info 0.61 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
98 ein3-1eil1-1 dark 0.26 >More info 0.56 >More info Wt dark whole 4-day old etiolated seedlings Original data GEO bulk
99 ACN1-2 0.29 >More info 0.52 >More info col-7 Original data GEO bulk
100 bZIP1ko mutant N+Light- -0.21 >More info -0.59 >More info WT-sib N+Light- whole plant Original data GEO bulk
101 Col leaf scrape 5 dpi -0.55 >More info -0.24 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
102 Norflurazon -0.26 >More info -0.51 >More info Col-0 Original data GEO bulk
103 Norflurazon -0.26 >More info -0.51 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
104 efr-1 +elf18 10h 0.26 >More info 0.50 >More info WT +elf18 10h elf18 Original data GEO bulk
105 del1-1 5dpi -0.13 >More info -0.63 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
106 Cd 24h root 0.25 >More info 0.50 >More info WT-Untreated Shoot Original data GEO bulk
107 T101D 10mM NH4NO3 -0.16 >More info -0.59 >More info col 10mM NH4NO3 Root Original data
108 WT cold 24h -0.16 >More info -0.57 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
109 cpr5npr1svi1 -0.20 >More info -0.52 >More info WT(COL) Original data GEO bulk
110 IAA7mII over-expressor IAA Treated 0.02 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
111 pif4pif5 mut dark 0.18 >More info 0.53 >More info WT dark Original data GEO bulk
112 upb1-1 elongation zone -0.10 >More info -0.61 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
113 ABI3GR +DEX +CHX -0.20 >More info -0.51 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
114 PNO8 12 h 0.14 >More info 0.55 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
115 eto1-4 -0.50 >More info -0.17 >More info Col-0 whole seedling Original data GEO bulk
116 WT cotyledons 0.50 >More info 0.16 >More info Control for tissue data cotyledons Original data
117 WT NAA 1h 0.04 >More info 0.60 >More info WT 0h Leaf tissue Original data GEO bulk
118 npr1 -0.13 >More info -0.51 >More info WT(COL) Original data GEO bulk
119 3x(m) 0.11 >More info 0.50 >More info 2x two week old seedlings Original data
120 shoot control p35S -0.10 >More info -0.50 >More info shoot control total Original data GEO bulk
121 root longitudinal zone-3 pH 4.6 0.07 >More info 0.52 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
122 2hr transitory KNO3 PrR cell -0.06 >More info 0.65 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
123 Chemically -0.11 >More info 0.65 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
124 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
125 Col BTH -0.16 >More info 0.67 >More info Col rosettes Original data GEO bulk
126 seed germinating in countinuous light 24h SL -0.17 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
127 TNT-seedlings -0.18 >More info 0.67 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
128 2xX4x interploidy cross 0.09 >More info -0.58 >More info 2xX2x cross Original data GEO bulk
129 irradiated leaf (WT 5d) -0.11 >More info 0.57 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
130 Heat shock optimum -0.20 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
131 bbx24 in With Light 0.09 >More info -0.53 >More info WT in With Light light seedling Original data
132 5-Triiodobenzoic acid3 h -0.13 >More info 0.53 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
133 light 0.56 >More info -0.18 >More info dark light seedling Original data GEO bulk
134 Laer pretreat GA Flg22 1h -0.37 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
135 siliques AtHb1 control -0.27 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
136 ptpks2 0.26 >More info -0.50 >More info Col-WT leaves Original data GEO bulk
137 Leafminer damaged seedlings -0.33 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
138 Col0-PsmES4326-24hpi -0.43 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk