4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on seedlings + TSA
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List of experiments correlated with "seedlings + TSA"  Help Download transcriptome of top 30
Score Experiment Correlation from
seedlings + TSA		 Correlation to
seedlings + TSA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 seedlings + TSA 1.00 >More info 1.00 >More info control seedlings 10-day old whole seedling Original data GEO bulk
2 seedlings +5AC 0.66 >More info 0.63 >More info control seedlings 10-day old whole seedling Original data GEO bulk
3 root - 04% oxygen - 48h 0.46 >More info 0.76 >More info root - 21% oxygen - 48h Original data GEO bulk
4 seedling -S Exp -0.39 >More info -0.79 >More info seedling FN Exp seedling Original data
5 L2.4 mutant 0.53 >More info 0.62 >More info Wt Original data GEO bulk
6 Col-0 Root 100 mM ATP 30 min 0.51 >More info 0.63 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
7 WT Root Hypoxia 0.51 >More info 0.61 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
8 bri1-116 0.39 >More info 0.73 >More info Col seedling Original data GEO bulk
9 tfl1-1-23ºC -0.40 >More info -0.69 >More info WT-23ºC Original data GEO bulk
10 phr1 Shoot-Pi 0.54 >More info 0.53 >More info WT Root-Pi shoots Original data GEO bulk
11 toc1-1-61hr 0.46 >More info 0.60 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
12 Col-0 wt Hypoxic 0.44 >More info 0.61 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
13 root hypoxia total 0.41 >More info 0.63 >More info root control total Original data GEO bulk
14 toc1-1-85hr 0.48 >More info 0.54 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
15 P.p 2.5hai 0.40 >More info 0.61 >More info At-Control roots Original data GEO bulk
16 nar1-4/- 0.47 >More info 0.54 >More info WT whole seedling Original data GEO bulk
17 4C 1h 0.32 >More info 0.69 >More info 4C 0h Original data GEO bulk
18 toc1-1-81hr 0.37 >More info 0.63 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
19 ckh2 CK0 0.42 >More info 0.57 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
20 Col upon hypoxia 6 hrs 0.40 >More info 0.59 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
21 root - 04% oxygen - 30min 0.34 >More info 0.64 >More info root - 21% oxygen - 30min Original data GEO bulk
22 toc1-1-49hr 0.36 >More info 0.62 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
23 E2Fa-Dpa 0.57 >More info 0.40 >More info WT Original data GEO bulk
24 toc1-1-57hr 0.38 >More info 0.59 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
25 Chemically 0.42 >More info 0.55 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
26 Mutant nph4-1 -0.40 >More info -0.56 >More info Col Original data GEO bulk
27 hni9 high nitrogen 0.54 >More info 0.42 >More info WT high nitrogen roots Original data GEO bulk
28 ahg2-1sid2-2 0.33 >More info 0.63 >More info WT (Col) control Original data GEO bulk
29 24h volatiles Sp. HRO-C48 0.44 >More info 0.52 >More info 24h untreated whole seedling Original data GEO bulk
30 ein2-1 +elf18 10h -0.44 >More info -0.51 >More info WT +elf18 10h elf18 Original data GEO bulk
31 WT 30μM arsenate 8 hours. 0.40 >More info 0.54 >More info WT control (not supplemented). Original data
32 root - 01% oxygen - 2h 0.21 >More info 0.72 >More info root - 21% oxygen - 2h Original data GEO bulk
33 35SpBVR3 -0.42 >More info -0.51 >More info WT Original data GEO bulk
34 GR-REV 30min 0.43 >More info 0.50 >More info Col 30min Original data GEO bulk
35 WT-16ºC -0.39 >More info -0.53 >More info WT-23ºC Original data GEO bulk
36 expressing C2 Mock 0.37 >More info 0.54 >More info LUC2C Original data GEO bulk
37 atmyc2 cop1 Seedling Dark 0.40 >More info 0.51 >More info WT Seedling Dark Original data GEO bulk
38 root - 01% oxygen - 30min 0.33 >More info 0.58 >More info root - 21% oxygen - 30min Original data GEO bulk
39 2hr transitory KNO3 PrR cell 0.30 >More info 0.61 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
40 root longitudinal zone-4 pH 4.6 0.37 >More info 0.52 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
41 root - 08% oxygen - 48h 0.19 >More info 0.70 >More info root - 21% oxygen - 48h Original data GEO bulk
42 bbx24 in Simulated Shade -0.31 >More info -0.58 >More info WT in simulated shade shade seedling Original data
43 ckh2 CK25 0.34 >More info 0.54 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
44 Shoot apex inflorescence (after bolting) 0.23 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
45 seed germinating in countinuous light 24h SL 0.21 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
46 Aerobic e1 ate2 0.31 >More info 0.56 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
47 arr-BA-sample 0.52 >More info 0.35 >More info Wt-BA-sample seedling Original data
48 Octopus mutant DYG25 0.50 >More info 0.37 >More info WS Original data GEO bulk
49 ahg2-1 0.36 >More info 0.51 >More info WT (Col) control Original data GEO bulk
50 seedling h S Exp 0.27 >More info 0.60 >More info seedling -S Exp seedling Original data
51 CeO2 germinant -0.32 >More info -0.54 >More info Millipore Water germinant CeO2 seedling Original data
52 IAA 0.5 h 0.22 >More info 0.64 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
53 toc1-1-65hr 0.34 >More info 0.51 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
54 root - 04% oxygen - 2h 0.12 >More info 0.73 >More info root - 21% oxygen - 2h Original data GEO bulk
55 Methyl Jasmonate 3 h -0.30 >More info -0.54 >More info Mock 3 h Original data Basic hormone treatment of seedlings
56 aba3-1 0.18 >More info 0.66 >More info wt Original data GEO bulk
57 vtc1-1 0.25 >More info 0.59 >More info Col-0 whole plant Original data GEO bulk
58 tt4 UV -0.15 >More info -0.68 >More info UV aerial region Original data GEO bulk
59 QK HS 0.29 >More info 0.54 >More info QK control heat shocked seedling Original data GEO bulk
60 toc1-1-53hr 0.32 >More info 0.50 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
61 Col-0 low oxygen 0.31 >More info 0.51 >More info Col-0 control low oxygen root Original data GEO bulk
62 Chitin 0.29 >More info 0.53 >More info Col C Original data GEO bulk
63 HRE1-RNAi20 normoxia -0.31 >More info -0.51 >More info Col upon normoxia normoxia seedling roots Original data GEO bulk
64 root - 08% oxygen - 2h 0.15 >More info 0.65 >More info root - 21% oxygen - 2h Original data GEO bulk
65 2 hr Hypoxia Total RNA 0.29 >More info 0.51 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
66 SA 0.23 >More info 0.57 >More info WT mock Whole seedling Original data GEO bulk
67 root - 01% oxygen - 48h 0.13 >More info 0.66 >More info root - 21% oxygen - 48h Original data GEO bulk
68 roottip hypoxia total 0.20 >More info 0.58 >More info roottip control total Original data GEO bulk
69 wavy 0.28 >More info 0.50 >More info WT Original data GEO bulk
70 Col-0 2HS 0.27 >More info 0.51 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
71 dorn1-1 Root 100 mM ATP 30 min -0.25 >More info -0.53 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
72 columella auxin 0.27 >More info 0.50 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
73 FarRed Light 45min 0.16 >More info 0.60 >More info White Light 45min Original data Light treatments
74 Mock pft1 leaf -0.16 >More info -0.60 >More info Mock Col-0 leaf water leaf Original data GEO bulk
75 bak1-3 +Pep2 2h 0.26 >More info 0.50 >More info WT +Pep2 2h Pep2 Original data GEO bulk
76 Col BTH 0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
77 R. solani AG8 0.23 >More info 0.52 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
78 oligomycin 1 h 0.22 >More info 0.53 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
79 vtc2 mature somatic embryo 0.20 >More info 0.55 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
80 2hr continuous KNO3 and MSX PeR cell 0.20 >More info 0.55 >More info 2hr continuous KCl and MSX control PeR cell Pericycle root cells Original data GEO bulk
81 pnp1-1 1wk -P 0.21 >More info 0.53 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
82 20m.KCl -0.21 >More info -0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
83 Whole root - low pH 12H 0.18 >More info 0.56 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
84 msh1 variegation Col-0 0.15 >More info 0.58 >More info WT Col-0 above ground part of plant Original data GEO bulk
85 MG132 3 h 0.20 >More info 0.51 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
86 mdh -0.19 >More info -0.52 >More info Col Original data GEO bulk
87 bio4-1 mutant watered00µM biotin leaves -0.11 >More info -0.59 >More info bio4-1 mutant leaves leaves Original data GEO bulk
88 0.2µM SMX -0.16 >More info -0.53 >More info control Whole seedling Original data GEO bulk
89 Whole root - low pH 30min 0.08 >More info 0.61 >More info Whole root - Std pH 30min pH 4.6 for 30 min Original data GEO bulk
90 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
91 S14-150 0.11 >More info 0.57 >More info wt Original data GEO bulk
92 Heat shock optimum 0.02 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
93 CDB1-Knockout -0.10 >More info -0.57 >More info WT Original data GEO bulk
94 dor drought -0.05 >More info -0.61 >More info WT drought Original data GEO bulk
95 PstDC3000 48h 0.09 >More info 0.56 >More info WT untreated 48hr leaf Original data GEO bulk
96 Laer pretreat JA Flg22 0h -0.08 >More info -0.56 >More info Laer pretreat water control leaf discs Original data GEO bulk
97 afb3-1 2h KCl -0.09 >More info -0.54 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
98 irradiated leaf (cmt 1d) 0.12 >More info 0.50 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
99 abi1 hypocotyl 0.07 >More info 0.54 >More info Ler hypocotyl hypocotyl Original data GEO bulk
100 oas-a1.1 Cd 18h 0.07 >More info 0.53 >More info Cd 18h root Root Original data GEO bulk
101 sni1 0.06 >More info 0.53 >More info WT Original data GEO bulk
102 IAA Treated 0.07 >More info 0.51 >More info Negative Control Original data GEO bulk
103 rsa3-1 Na 24h -0.07 >More info 0.65 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
104 35S:PCO1 hypoxia -0.05 >More info -0.53 >More info WT hypoxia whole rosette Original data
105 Laer pretreat GA Flg22 1h -0.13 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
106 Light 0.05 >More info 0.51 >More info Control Original data GEO bulk
107 dsr1 0.01 >More info 0.55 >More info WT mock Whole seedling Original data GEO bulk
108 MPK6 ox Shoot Hypoxia -0.01 >More info 0.56 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
109 root - 08% oxygen - 30min -0.10 >More info 0.64 >More info root - 21% oxygen - 30min Original data GEO bulk
110 TNT-seedlings -0.02 >More info 0.55 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
111 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
112 -Sulfate 24 h 0.15 >More info -0.66 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
113 35S:RPS4 eds1-2 2h 0.01 >More info -0.52 >More info 35S:RPS4 2h leaves Original data
114 siliques AtHb1 control -0.09 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
115 WT Atum 1h 0.15 >More info -0.56 >More info WT 0h Leaf tissue Original data GEO bulk
116 Leafminer damaged seedlings -0.16 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
117 Col0-PsmES4326-24hpi -0.24 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk