4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on cat2-short-day 2d
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List of experiments correlated with "cat2-short-day 2d"  Help Download transcriptome of top 30
Score Experiment Correlation from
cat2-short-day 2d		 Correlation to
cat2-short-day 2d		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 cat2-short-day 2d 1.00 >More info 1.00 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
2 cat2-short-day 4d 0.81 >More info 0.90 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
3 cat2-2; 8h switch to ambient CO2 concentrations; 0.77 >More info 0.86 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
4 seedling -S Exp 0.57 >More info 0.74 >More info seedling FN Exp seedling Original data
5 plant (Col-0) 4h phytoprostane A1 0.64 >More info 0.62 >More info plant (tga2-5-6) 4h control Original data GEO bulk
6 IAA/inhibitor A Treated 0.71 >More info 0.54 >More info IAA Treated Original data GEO bulk
7 inhibitor A Treated 0.68 >More info 0.56 >More info Negative Control Original data GEO bulk
8 GO5; 8h switch to ambient CO2 concentrations; 0.57 >More info 0.67 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
9 TNT-seedlings 0.66 >More info 0.56 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
10 WT H2O2 3h 0.66 >More info 0.54 >More info WT water 3h 3h_H2O2 Original data GEO bulk
11 low CO2 + light 0.66 >More info 0.54 >More info normal CO2 + light Original data GEO bulk
12 anac017-2 water 3h 0.50 >More info 0.70 >More info WT water 3h 3h_water Original data GEO bulk
13 5-Triiodobenzoic acid3 h 0.63 >More info 0.56 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
14 Col ozone 3h 0.53 >More info 0.65 >More info Col clean-air 3h ozone Original data GEO bulk
15 WT 30μM arsenate 8 hours. 0.64 >More info 0.54 >More info WT control (not supplemented). Original data
16 Phytoprostane A1 4 h 0.64 >More info 0.53 >More info Col-0 Original data GEO bulk
17 PNO8 3 h 0.50 >More info 0.67 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
18 plant (tga2-5-6) 4h phytoprostane A1 0.58 >More info 0.58 >More info plant (tga2-5-6) 4h control Original data GEO bulk
19 IAA/inhibitor B Treated 0.62 >More info 0.53 >More info IAA Treated Original data GEO bulk
20 Laer pretreat JA Flg22 0h 0.44 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
21 sid2-avrB-6h 0.47 >More info 0.66 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
22 cat2-long-day 4d 0.28 >More info 0.85 >More info Col0-LD4 transferred to air (400 ppm) for 4 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
23 inhibitor B Treated 0.55 >More info 0.56 >More info Negative Control Original data GEO bulk
24 35S::PI ap3-3 35S::AP-GR +DEX 0.40 >More info 0.71 >More info 0hr DEX Original data GEO bulk
25 WT+H2O2 0.60 >More info 0.50 >More info WT H2O2 Original data GEO bulk
26 Col0-PsmES4326-24hpi 0.48 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
27 9 hr Hypoxia IP RNA 0.64 >More info 0.43 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
28 WT seedlings MV 0.50 >More info 0.57 >More info WT seedlings control Seedlings Original data GEO bulk
29 atgsnor1-3-avrB-6h 0.43 >More info 0.63 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
30 CMP 4hr 0.65 >More info 0.40 >More info Acetone 4hr root Original data GEO bulk
31 cell culture 4 h phytoprostane A1 0.58 >More info 0.47 >More info cell culture 4 h control Original data GEO bulk
32 Anoxia 0.51 >More info 0.53 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
33 oligomycin 1 h 0.50 >More info 0.54 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
34 WT AntimycinA 3h 0.63 >More info 0.41 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
35 (Ws-2)+100 uM As 0.60 >More info 0.43 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
36 gai Control 0.55 >More info 0.47 >More info Laer Control leaf discs Original data GEO bulk
37 Fenclorim 4hr 0.63 >More info 0.39 >More info Acetone 4hr root Original data GEO bulk
38 gpa1 +ABA LF 0.44 >More info 0.58 >More info Col-0 +ABA LF Leaves of five week-old plants Original data GEO bulk
39 Col-0 low oxygen 0.55 >More info 0.46 >More info Col-0 control low oxygen root Original data GEO bulk
40 Hydrogen Peroxide 500 uM 0.46 >More info 0.55 >More info Control RB and PER Hydrogen Peroxide Original data
41 NJ15 0.37 >More info 0.64 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
42 flu 0.54 >More info 0.46 >More info WT Col Original data GEO bulk
43 sid2-2 9 hpi A. brassicicola 0.50 >More info 0.50 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
44 flu over-tAPX 0.56 >More info 0.44 >More info WT Col Original data GEO bulk
45 dde2-2 9 hpi A. brassicicola 0.47 >More info 0.53 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
46 Seedling KUA1-IOX est 0.51 >More info 0.48 >More info Seedling KUA1-IOX mock Original data
47 PsJN -0.46 >More info -0.53 >More info Control inoculated with the PGPR bacterial model Burkholderia phytofirmans PsJN Plantlet Original data GEO bulk
48 oligomycin 4 h 0.60 >More info 0.37 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
49 Col-0 under 4 days salt 0.61 >More info 0.36 >More info Col-0 under control 4 days salt treatment rosette Original data
50 Col-Luc WT 3h antimycin A 0.62 >More info 0.35 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
51 9 hr Hypoxia 1 hr recovery Total RNA 0.60 >More info 0.36 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
52 safener treated 0.62 >More info 0.34 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
53 flu dark 8hours/30 minute light 0.36 >More info 0.60 >More info col dark 8hours/30 minute light Original data GEO bulk
54 chito-tetramer 0.54 >More info 0.41 >More info Col Mock Original data GEO bulk
55 6-trichlorophenoxyacetic acid 3 h 0.35 >More info 0.60 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
56 seedling h S Exp -0.38 >More info -0.57 >More info seedling -S Exp seedling Original data
57 (Col-0)+100 uM As 0.51 >More info 0.43 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
58 root stele 40 mM NaCls 0.61 >More info 0.33 >More info root stele Original data GEO bulk
59 Cocultivation 8 hrs root 0.56 >More info 0.37 >More info Mock cocultivation 8 hrs root Root Original data
60 cat2-long-day 2d 0.17 >More info 0.76 >More info Col0-LD2 transferred to air (400 ppm) for 2 days in long day regime (16h light/8h dark) rosette leaf material Original data GEO bulk
61 anac017-2 AntimycinA 3h -0.61 >More info -0.32 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
62 (Col-0)+200 uM As 0.51 >More info 0.42 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
63 sfr3 cold 0.41 >More info 0.52 >More info WT cold All aerial tissue Original data GEO bulk
64 35S::MBF1c 0.41 >More info 0.51 >More info control Original data GEO bulk
65 atmyc2 Seedling BL 0.34 >More info 0.58 >More info WT Seedling BL Original data GEO bulk
66 short 17-degree- -0.24 >More info -0.67 >More info control short Original data GEO bulk
67 9 hr Hypoxia 1 hr recovery IP RNA 0.59 >More info 0.32 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
68 -Sulfate 24 h 0.19 >More info 0.72 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
69 spch 0.53 >More info 0.37 >More info Col-0 WT whole seedling Original data GEO bulk
70 low CO2 + dark 0.52 >More info 0.38 >More info normal CO2 + light Original data GEO bulk
71 Shoot -Cs 0.38 >More info 0.52 >More info Control-shoot Original data GEO bulk
72 ex2 flu dark 8hours/30 minute light 0.30 >More info 0.60 >More info col dark 8hours/30 minute light Original data GEO bulk
73 Col-O high light 0.51 >More info 0.38 >More info Col-O bule light Original data GEO bulk
74 9 hr Hypoxia Total RNA 0.54 >More info 0.35 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
75 2 hr Hypoxia IP RNA 0.56 >More info 0.32 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
76 siliques AtHb1 control 0.35 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
77 root Dosed gold 0.59 >More info 0.27 >More info root No gold .125 mM gold 24 h roots Original data
78 0.125 mM gold 24 h 0.59 >More info 0.27 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
79 agb1 gpa1 -ABA LF -0.15 >More info -0.71 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
80 vte2-1 1d vernalization 0.54 >More info 0.31 >More info WT 1d vernalization Original data GEO bulk
81 SCR-GR Time 12H Dex 0.56 >More info 0.28 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
82 AgNO3 3 h 0.55 >More info 0.29 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
83 6h +Pi -0.60 >More info -0.24 >More info 6h -Pi root Original data GEO bulk
84 Laer pretreat GA Flg22 1h 0.13 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
85 coi1-2 0.64 >More info 0.19 >More info Col-0 mock Whole seedling Original data GEO bulk
86 Nicotinamide-65hr 0.55 >More info 0.28 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
87 root columella root cap 40 mM NaCl 0.53 >More info 0.29 >More info root columella root cap Original data GEO bulk
88 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.51 >More info 0.30 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
89 rosettes WT drought 0.54 >More info 0.27 >More info rosettes WT watered Original data GEO bulk
90 Rose Bengal 0.5 uM 0.31 >More info 0.50 >More info Control RB and PER Rose Bengal Original data
91 Elevated CO2 AMPLE N DAY -0.21 >More info -0.60 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
92 Nicotinamide-61hr 0.52 >More info 0.28 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
93 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.51 >More info 0.29 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
94 Col-0 ozone 0.51 >More info 0.29 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
95 Ibuprofen 3 h 0.21 >More info 0.59 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
96 phyB mutant 16C 4hrs 0.22 >More info 0.58 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
97 C2 leaf-drought 0.50 >More info 0.29 >More info C2 leaf-well watered Original data GEO bulk
98 Heat shock optimum 0.14 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
99 arp6-10 12 ºC 0.22 >More info 0.56 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
100 dark +H2O2 0.25 >More info 0.53 >More info dark 5 mM H2O2 seedling Original data GEO bulk
101 root - 08% oxygen - 30min 0.21 >More info 0.57 >More info root - 21% oxygen - 30min Original data GEO bulk
102 Osmotic Stress 24 h (root) 0.52 >More info 0.23 >More info Stress mock 24 h (root) Original data Stress treatments
103 pXVE:HA-EDM2-a untreated -0.25 >More info -0.50 >More info Col-0 untreated seedlings Original data GEO bulk
104 gpa1 -ABA LF -0.00 >More info -0.75 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
105 Salt Stress 24 h (root) 0.55 >More info 0.19 >More info Stress mock 24 h (root) Original data Stress treatments
106 ARR22-ox (t-zeatin 3 h) 0.53 >More info 0.21 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
107 Mutant gh3.5-1D 0.21 >More info 0.53 >More info Col-0 Original data GEO bulk
108 rosettes myoox drought 0.59 >More info 0.14 >More info rosettes myoox watered Original data GEO bulk
109 Red/FR Light45min 0.07 >More info 0.66 >More info FarRed Light 45min Original data Light treatments
110 ABA DFPM 0.60 >More info 0.11 >More info control Original data GEO bulk
111 dicamba 0.52 >More info 0.19 >More info WT mock whole seedling Original data GEO bulk
112 ANAC102 over-expressor 0.19 >More info 0.52 >More info C24 Original data GEO bulk
113 des1.1 -0.19 >More info -0.52 >More info Leaves-WT leaf Original data GEO bulk
114 8-DAC chr11-1chr17-1 0.55 >More info 0.14 >More info 8-DAC Col-0 leaf explants Original data
115 Col-0 C2H4 24h 0.52 >More info 0.17 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
116 agb1 -ABA LF -0.14 >More info -0.54 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
117 Leafminer damaged seedlings 0.12 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
118 Nicotinamide-57hr 0.50 >More info 0.18 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
119 rdr6-15 -0.50 >More info -0.17 >More info Col-0 Original data GEO bulk
120 bak1-3 +Pep2 10h 0.60 >More info 0.07 >More info WT +Pep2 10h Pep2 Original data GEO bulk
121 Col BTH -0.01 >More info 0.67 >More info Col rosettes Original data GEO bulk
122 pepr1-1 Pepr2-3 +Pep2 10h -0.54 >More info -0.11 >More info WT +Pep2 10h Pep2 Original data GEO bulk
123 FarRed Light 45min 0.03 >More info -0.67 >More info White Light 45min Original data Light treatments
124 IAA7mII over-expressor IAA Treated -0.05 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
125 desiccated mature pollen grains -0.07 >More info -0.57 >More info hydrated pollen grains Original data GEO bulk
126 MG132 3 h 0.05 >More info 0.58 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
127 shoot hypoxia p35S -0.11 >More info -0.50 >More info shoot hypoxia total Original data GEO bulk
128 Mutant iaa17-6 -0.06 >More info -0.54 >More info Col Original data GEO bulk
129 DFPM 0.57 >More info 0.03 >More info control Original data GEO bulk
130 seed germinating in countinuous light 24h SL -0.08 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
131 CMP 24hr 0.51 >More info 0.08 >More info Acetone 24hr root Original data GEO bulk
132 opr3 JA 0.5 h -0.03 >More info -0.55 >More info opr3 0 h Original data GEO bulk
133 3x(m) -0.04 >More info 0.59 >More info 2x two week old seedlings Original data
134 efr-1 +elf18 10h -0.51 >More info -0.03 >More info WT +elf18 10h elf18 Original data GEO bulk
135 SHR-GR Time 1H Dex 0.50 >More info 0.03 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
136 root longitudinal zone-1 -Fe -0.10 >More info 0.62 >More info root longitudinal zone-1 standard Original data GEO bulk
137 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
138 WT (Ler) CK25 -0.04 >More info 0.52 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
139 Constans-mutant 0.09 >More info -0.57 >More info Col control above-ground whole plant Original data GEO bulk
140 bri1-116 -0.25 >More info 0.73 >More info Col seedling Original data GEO bulk
141 WT 1wk -P 0.53 >More info -0.06 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
142 cat2-hCO2 -0.19 >More info 0.65 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
143 Shoot apex inflorescence (after bolting) -0.21 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
144 35S:miR396 -0.08 >More info 0.50 >More info WT 0 days-old seedlings. Original data GEO bulk