4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Whole root - low pH 6H
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List of experiments correlated with "Whole root - low pH 6H"  Help Download transcriptome of top 30
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Whole root - low pH 6H		 Correlation to
Whole root - low pH 6H		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Whole root - low pH 6H 1.00 >More info 1.00 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
2 Whole root - low pH 3H 0.81 >More info 0.86 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
3 Whole root - low pH 12H 0.86 >More info 0.76 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
4 root longitudinal zone-2 low sulfur -0.79 >More info -0.75 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
5 Whole root - low pH 24H 0.77 >More info 0.76 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
6 TNT-seedlings 0.73 >More info 0.65 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
7 whole roots -Fe 72 hour 0.80 >More info 0.54 >More info whole roots standard Original data GEO bulk
8 Fe starvation 72 h 0.80 >More info 0.54 >More info Control Original data GEO bulk
9 whole roots -Fe 48 hour 0.76 >More info 0.58 >More info whole roots standard Original data GEO bulk
10 9m.KCl 0.75 >More info 0.55 >More info To. KCl 14 day old Roots Original data GEO bulk
11 hira-root -0.73 >More info -0.57 >More info WT-root root Original data
12 root longitudinal zone-4 low sulfur -0.68 >More info -0.61 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
13 8hr-pH4.5 0.68 >More info 0.60 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
14 COL-0-Fe--root 0.72 >More info 0.56 >More info COL-0-Ctrl--root root Original data
15 Whole root - low pH 1H 0.54 >More info 0.74 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
16 Whole root - S 3H 0.48 >More info 0.78 >More info Whole root - S 0H Original data GEO bulk
17 SCR-GR Time 12H Dex 0.63 >More info 0.61 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
18 root longitudinal zone-1 low sulfur -0.63 >More info -0.61 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
19 6h +Pi -0.67 >More info -0.57 >More info 6h -Pi root Original data GEO bulk
20 root longitudinal zone-2 pH 4.6 0.56 >More info 0.67 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
21 root endodermis -S -0.72 >More info -0.51 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
22 Cocultivation 8 hrs root 0.68 >More info 0.53 >More info Mock cocultivation 8 hrs root Root Original data
23 root longitudinal zone-3 low sulfur -0.66 >More info -0.53 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
24 root columella root cap pH4.6 0.68 >More info 0.51 >More info root columella root cap pH5.7 Original data GEO bulk
25 oligomycin 1 h 0.59 >More info 0.59 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
26 Roots Cd -0.51 >More info -0.65 >More info Roots control Cd Root Original data GEO bulk
27 GO5; 8h switch to ambient CO2 concentrations; 0.57 >More info 0.59 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
28 nia1nia2 0.67 >More info 0.48 >More info Col-0 whole seedlings Original data GEO bulk
29 Fenclorim 24hr 0.69 >More info 0.44 >More info Acetone 24hr root Original data GEO bulk
30 nia1nia2noa1-2 0.65 >More info 0.48 >More info Col-0 whole seedlings Original data GEO bulk
31 (Ws-2)+100 uM As 0.57 >More info 0.53 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
32 seedlings-week-old RECA1-overexpressing
transgenic		 0.63 >More info 0.47 >More info seedlings-week-old Col-0 seedlings Original data
33 oligomycin 4 h 0.67 >More info 0.42 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
34 Sulfometuron EC50 0.54 >More info 0.55 >More info Carrier Original data GEO bulk
35 Col0 roots 2hr KNO3 nitrogen -0.31 >More info -0.78 >More info Col0 roots 2hr KCl control root Original data GEO bulk
36 dde2-2 9 hpi A. brassicicola 0.57 >More info 0.51 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
37 root Dosed gold 0.69 >More info 0.39 >More info root No gold .125 mM gold 24 h roots Original data
38 Triazolopyrimidine EC50 0.57 >More info 0.51 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
39 0.125 mM gold 24 h 0.69 >More info 0.39 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
40 Col -Fe 0.65 >More info 0.42 >More info Col-es root Original data GEO bulk
41 Primisulfuron EC50 0.58 >More info 0.49 >More info Carrier (primisulfuron) Original data GEO bulk
42 Tsu -Fe 24h Roots 0.52 >More info 0.54 >More info Tsu +Fe 24h Roots Original data GEO bulk
43 Tsu-1 -Fe 24h 0.52 >More info 0.54 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
44 Fenclorim 4hr 0.61 >More info 0.44 >More info Acetone 4hr root Original data GEO bulk
45 roots IAA 0.61 >More info 0.44 >More info roots mock Original data GEO bulk
46 Phytoprostane A1 4 h 0.55 >More info 0.46 >More info Col-0 Original data GEO bulk
47 CMP 4hr 0.64 >More info 0.37 >More info Acetone 4hr root Original data GEO bulk
48 root longitudinal zone-1 pH 4.6 0.45 >More info 0.56 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
49 root stele pH4.6 0.51 >More info 0.49 >More info root stele pH5.7 Original data GEO bulk
50 Col0-PsmES4326-24hpi 0.39 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
51 Whole root - S 12H 0.31 >More info 0.69 >More info Whole root - S 0H Original data GEO bulk
52 bak1-3 +Pep2 10h 0.55 >More info 0.44 >More info WT +Pep2 10h Pep2 Original data GEO bulk
53 ubc13A -Fe -0.66 >More info -0.33 >More info Col -Fe root Original data GEO bulk
54 Whole root - S 48H 0.38 >More info 0.61 >More info Whole root - S 0H Original data GEO bulk
55 bbx24 in Simulated Shade -0.58 >More info -0.40 >More info WT in simulated shade shade seedling Original data
56 1hr-pH4.5 0.52 >More info 0.46 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
57 dicamba 0.60 >More info 0.38 >More info WT mock whole seedling Original data GEO bulk
58 15m.KCl 0.61 >More info 0.37 >More info To. KCl 14 day old Roots Original data GEO bulk
59 CDB1-Knockout -0.39 >More info -0.59 >More info WT Original data GEO bulk
60 Root -Cs 0.43 >More info 0.55 >More info Control-root Original data GEO bulk
61 Imidazolinone EC50 0.58 >More info 0.38 >More info Carrier (Imidazolinone) Original data GEO bulk
62 root stele -S -0.50 >More info -0.46 >More info root stele pH5.7 Original data GEO bulk
63 SHR-GR Time 1H Dex 0.43 >More info 0.53 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
64 rcf1-1 cold 24h 0.44 >More info 0.52 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
65 Col BTH 0.28 >More info 0.67 >More info Col rosettes Original data GEO bulk
66 5-Triiodobenzoic acid3 h 0.50 >More info 0.45 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
67 BLM+INA 0.54 >More info 0.40 >More info CK BLM and INA seedling Original data
68 sid2-2 9 hpi A. brassicicola 0.55 >More info 0.39 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
69 aox1a:rpoTmp untreated 0.52 >More info 0.42 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
70 Seedling KUA1-IOX est 0.37 >More info 0.56 >More info Seedling KUA1-IOX mock Original data
71 ein2-1 9 hpi A. brassicicola 0.52 >More info 0.41 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
72 Col-0 2h NAA 0.51 >More info 0.42 >More info Col-0 6h MOCK Original data GEO bulk
73 sicy-192 gun1-101 cotyledons 0.61 >More info 0.32 >More info WT cotyledons cotyledons Original data
74 dorn1-1 Root 100 mM ATP 30 min -0.42 >More info -0.51 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
75 Leaf GLU1-KO 0.54 >More info 0.38 >More info Leaf Col(0) rosette leaves Original data GEO bulk
76 24h +Pi -0.56 >More info -0.36 >More info 24h -Pi root Original data GEO bulk
77 root columella root cap -S -0.59 >More info -0.33 >More info root columella root cap pH5.7 Original data GEO bulk
78 BLM 0.53 >More info 0.38 >More info CK BLM seedling Original data
79 plant (tga2-5-6) 4h phytoprostane A1 0.52 >More info 0.39 >More info plant (tga2-5-6) 4h control Original data GEO bulk
80 LTN008-2 aza-dc 0.62 >More info 0.29 >More info LTN012-2 Mock Original data
81 Nicotinamide-53hr 0.52 >More info 0.38 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
82 R. solani AG8 0.55 >More info 0.35 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
83 SCR-GR Time 1H Dex 0.28 >More info 0.62 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
84 ABA SA 24h 0.16 >More info 0.73 >More info EtOH 24h 24hr Original data GEO bulk
85 Whole root - S 24H 0.37 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
86 tor mutant glucose 0.37 >More info 0.52 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
87 WT chitooctaose 0.56 >More info 0.32 >More info WT water Original data GEO bulk
88 Col-0 low oxygen 0.51 >More info 0.37 >More info Col-0 control low oxygen root Original data GEO bulk
89 SCL3 OE -0.51 >More info -0.37 >More info Col-0 whole root Original data GEO bulk
90 afb3-1 2h KNO3 0.32 >More info 0.55 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
91 CMP 24hr 0.61 >More info 0.26 >More info Acetone 24hr root Original data GEO bulk
92 1h +Pi -0.36 >More info -0.51 >More info 1h -Pi root Original data GEO bulk
93 WT 30μM arsenate 8 hours. 0.58 >More info 0.29 >More info WT control (not supplemented). Original data
94 Nicotinamide-81hr 0.53 >More info 0.32 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
95 Leafminer damaged seedlings 0.29 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
96 protoplasted roots pH4.6 0.62 >More info 0.23 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
97 root cortex pH4.6 0.64 >More info 0.21 >More info root cortex pH5.7 Original data GEO bulk
98 35S::PI ap3-3 35S::AP-GR +DEX 0.26 >More info 0.59 >More info 0hr DEX Original data GEO bulk
99 Nicotinamide-49hr 0.50 >More info 0.34 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
100 ABA DFPM 0.55 >More info 0.29 >More info control Original data GEO bulk
101 roots bhlh100/101 100uM Fe -0.56 >More info -0.28 >More info roots WT 100uM Fe 100uM Fe roots Original data GEO bulk
102 grf1/grf2/grf3 0.54 >More info 0.29 >More info WS Original data GEO bulk
103 shoots WT 0uM Fe 0.53 >More info 0.30 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
104 Shoot -K 0.60 >More info 0.23 >More info Control-shoot Original data GEO bulk
105 K starvation (shoot) 0.60 >More info 0.23 >More info Ws (shoot) Original data GEO bulk
106 sni1 0.55 >More info 0.27 >More info WT Original data GEO bulk
107 Var2-1 roots 2hr KCl control -0.54 >More info -0.28 >More info Col0 roots 2hr KCl control root Original data GEO bulk
108 seedling -S Exp 0.57 >More info 0.25 >More info seedling FN Exp seedling Original data
109 3m.KCl 0.61 >More info 0.20 >More info To. KCl 14 day old Roots Original data GEO bulk
110 Whole root - S 72H 0.29 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
111 Shoot -Cs 0.28 >More info 0.53 >More info Control-shoot Original data GEO bulk
112 CLO 4mM 0.50 >More info 0.30 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
113 DFPM 0.56 >More info 0.23 >More info control Original data GEO bulk
114 Wounding Stress3 h (root) -0.57 >More info -0.22 >More info Stress mock 3 h (root) Original data Stress treatments
115 cdkf:1-2 0.53 >More info 0.25 >More info wt seedling young seedlings Original data GEO bulk
116 Nicotinamide-57hr 0.54 >More info 0.24 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
117 embryo paclobutrazol 0.51 >More info 0.26 >More info embryo-control paclobutrazol embryo Original data GEO bulk
118 oas-a1.1 root 0.25 >More info 0.52 >More info WT-Untreated Root Original data GEO bulk
119 IAA/inhibitor A Treated 0.51 >More info 0.25 >More info IAA Treated Original data GEO bulk
120 rsa1 salt 0 h 0.51 >More info 0.25 >More info WT salt 0 h Control seedlings Original data GEO bulk
121 Root submergence 24h 0.56 >More info 0.19 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
122 Col-0 Root 100 mM ATP 30 min 0.58 >More info 0.15 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
123 shoots bhlh100/101 0uM Fe 0.53 >More info 0.20 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
124 leaf blade in FRD 0.53 >More info 0.20 >More info leaf blade in WL leaf blades Original data GEO bulk
125 COL-0-Fe--shoot 0.21 >More info 0.52 >More info COL-0-Ctrl--shoot shoot Original data
126 seed germinating in countinuous light 24h SL 0.04 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
127 gapcp1gapcp2 0.51 >More info 0.20 >More info WT Original data GEO bulk
128 phr1 Shoot-Pi 0.62 >More info 0.09 >More info WT Root-Pi shoots Original data GEO bulk
129 Root dark control 24h 0.53 >More info 0.18 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
130 Heat shock optimum 0.05 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
131 seedling 24h after HZE WT 0.50 >More info 0.20 >More info seedling day 2 unirradiated WT 24h Original data
132 bri1-116 -0.03 >More info 0.73 >More info Col seedling Original data GEO bulk
133 ABA JA 24h 0.18 >More info 0.52 >More info EtOH 24h 24hr Original data GEO bulk
134 Shoot apex inflorescence (after bolting) 0.04 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
135 cngc1-3 0.14 >More info 0.55 >More info Col-0 root Original data GEO bulk
136 Nicotinamide-65hr 0.50 >More info 0.19 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
137 root cap pGL2(root cap pGL2BRI1) 8h BL -0.09 >More info -0.60 >More info root cap pGL2(root cap pGL2BRI1) 0h BL brassinosteroid root Original data
138 myb3 myb3r4d 0.06 >More info 0.61 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
139 chl1-5 10mM NH4NO3 0.51 >More info 0.13 >More info col 10mM NH4NO3 Root Original data
140 chl1-12 10mM NH4NO3 0.55 >More info 0.08 >More info col 10mM NH4NO3 Root Original data
141 short 12-degree- 0.10 >More info 0.53 >More info control short Original data GEO bulk
142 siliques AtHb1 control 0.11 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
143 xyl-grown cell culture- 1h 1mM Suc -0.01 >More info -0.61 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
144 roots WT 0uM Fe -0.54 >More info -0.07 >More info roots WT 100uM Fe 0uM Fe roots Original data GEO bulk
145 21h-DC3000 avrRpm1 -0.11 >More info -0.50 >More info 21h-DC3000 leaves Original data GEO bulk
146 Salicylic Acid 3 h 0.02 >More info 0.54 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
147 WT Atum 1h 0.01 >More info 0.55 >More info WT 0h Leaf tissue Original data GEO bulk
148 t-zeatin 0.5 h -0.05 >More info -0.50 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
149 Laer pretreat GA Flg22 1h -0.18 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
150 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
151 ice1 control 0.50 >More info -0.00 >More info WT control Original data GEO bulk
152 arf6 arf8 stage2 0.51 >More info -0.04 >More info WT stage2 Original data GEO bulk
153 IAA7mII over-expressor IAA Treated -0.24 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk