4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyAphyB Dark
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List of experiments correlated with "phyAphyB Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyAphyB Dark		 Correlation to
phyAphyB Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyAphyB Dark 1.00 >More info 1.00 >More info phyB Dark Original data GEO bulk
2 phyB Dark -0.97 >More info -0.97 >More info WT(Ler) Dark Original data GEO bulk
3 WT(Ler) Rc50 -0.90 >More info -0.92 >More info WT(Ler) Dark Original data GEO bulk
4 WT Rc50 -0.90 >More info -0.91 >More info WT Dark red light whole seedling Original data GEO bulk
5 WT(Ler) Rc15 -0.88 >More info -0.88 >More info WT(Ler) Dark Original data GEO bulk
6 etiolated cop1BBX22-GFPox -0.84 >More info -0.85 >More info etiolated Col-0 whole seedlings Original data GEO bulk
7 WT Red light 18h -0.81 >More info -0.79 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
8 Light 4h polysome-bound -0.77 >More info -0.74 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
9 CabpBVR2 0.74 >More info 0.77 >More info WT Original data GEO bulk
10 Light 4h steady-state -0.76 >More info -0.74 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
11 35SpBVR3 0.72 >More info 0.73 >More info WT Original data GEO bulk
12 2d dark-grown pif1pif3pif4pif5 (pifq) mutant -0.75 >More info -0.68 >More info 2d dark-grown WT seedling Original data GEO bulk
13 WT light -0.71 >More info -0.69 >More info WT dark Original data GEO bulk
14 WT Seedling BL -0.67 >More info -0.71 >More info WT Seedling Dark Original data GEO bulk
15 aerial organ callus inducing medium 48 h 0.67 >More info 0.66 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
16 aerial organ callus inducing medium 96 h 0.66 >More info 0.67 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
17 WT Red light 1h -0.64 >More info -0.68 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
18 aerial organ callus inducing medium 12 h 0.64 >More info 0.67 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
19 2d dark-grown WT(Col-0)/1 hr red light -0.62 >More info -0.69 >More info 2d dark-grown WT seedling Original data GEO bulk
20 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		-0.67 >More info -0.61 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
21 aerial organ callus inducing medium 24h 0.65 >More info 0.63 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
22 csn5 (csn5a-2 csn5b) dark -0.70 >More info -0.58 >More info WT dark Original data GEO bulk
23 cop1 Seedling Dark -0.59 >More info -0.68 >More info WT Seedling Dark Original data GEO bulk
24 Light 0.5h polysome-bound -0.54 >More info -0.72 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
25 csn4-1 mutant -0.69 >More info -0.55 >More info WT dark Original data GEO bulk
26 Col-7 Sucrose 0.67 >More info 0.57 >More info col-7 Original data GEO bulk
27 pif4pif5 mut 24h FR -0.63 >More info -0.61 >More info WT 24h FR Original data GEO bulk
28 csn3-1 dark -0.68 >More info -0.55 >More info WT dark Original data GEO bulk
29 phr1 Shoot-Pi -0.66 >More info -0.56 >More info WT Root-Pi shoots Original data GEO bulk
30 Laer pretreat GA Flg22 1h 0.50 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
31 Dark 4 h pls RedLight 1min -0.46 >More info -0.75 >More info Dark 4 h Original data Light treatments
32 atmyc2 cop1 Seedling Dark -0.58 >More info -0.62 >More info WT Seedling Dark Original data GEO bulk
33 Col-0 low oxygen 0.62 >More info 0.56 >More info Col-0 Original data GEO bulk
34 Red/FR Light 4 h 0.53 >More info 0.64 >More info FarRed Light 4 h Original data Light treatments
35 Dark 4 h pls UV-A 5 min -0.51 >More info -0.65 >More info Dark 4 h Original data Light treatments
36 phr1 phl1 Root-Pi 0.59 >More info 0.54 >More info WT Shoot+Pi roots Original data GEO bulk
37 Dark 40 min pls UV-A 5 min -0.48 >More info -0.65 >More info Dark 45 min Original data Light treatments
38 Dark 44min pls RedLigh 1min -0.47 >More info -0.65 >More info Dark 45 min Original data Light treatments
39 toc1-1-89hr -0.45 >More info -0.66 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
40 Heat shock optimum 0.46 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
41 Light 0.5h steady-state -0.43 >More info -0.66 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
42 Col-0 Root 100 mM ATP 30 min -0.57 >More info -0.51 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
43 Wt-BA-sample 0.52 >More info 0.55 >More info Wt-dmso-sample seedling Original data
44 AtGATA2ox -0.57 >More info -0.50 >More info Col seedling Original data GEO bulk
45 pif3 Dark 0h -0.51 >More info -0.55 >More info WT Dark 0h etiolated seedling Original data GEO bulk
46 gul2-1 mutant 0.59 >More info 0.47 >More info WT 7 day-old whole seedlings Original data
47 Dark 4 h pls UV-AB 5min -0.60 >More info -0.45 >More info Dark 4 h Original data Light treatments
48 elf3-7-23ºC 0.39 >More info 0.66 >More info WT-23ºC Original data GEO bulk
49 Inflorescence miR-NGA 0.50 >More info 0.54 >More info Inflorescence wt Original data GEO bulk
50 phyB Rc50 -0.56 >More info -0.47 >More info WT(Ler) Rc50 Original data GEO bulk
51 FarRed Light 4 h -0.40 >More info -0.62 >More info White Light 4 h Original data Light treatments
52 tt4 -0.39 >More info -0.63 >More info WT aerial region Original data GEO bulk
53 CCA14 dark late 0.63 >More info 0.38 >More info Col dark late Original data GEO bulk
54 16h Col-0 0.38 >More info 0.62 >More info 00h Col-0 Original data GEO bulk
55 pif3 Dark 1h -0.44 >More info -0.55 >More info WT Dark 1h etiolated seedling Original data GEO bulk
56 Red Light 4 h 0.46 >More info 0.52 >More info White Light 4 h Original data Light treatments
57 MIL4 ox BTH 0.48 >More info 0.50 >More info Col BTH Original data GEO bulk
58 sicy-192 cotyledons 0.45 >More info 0.53 >More info WT cotyledons cotyledons Original data
59 Differentiation 36h 0.58 >More info 0.39 >More info Differentiation 0h leaves Original data
60 Differentiation 12h 0.51 >More info 0.46 >More info Differentiation 0h leaves Original data
61 Differentiation 48h 0.58 >More info 0.39 >More info Differentiation 0h leaves Original data
62 D2O 0.46 >More info 0.51 >More info H2O seedling Original data GEO bulk
63 pif4pif5 high R/FR -0.39 >More info -0.56 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
64 light -0.77 >More info -0.18 >More info dark light seedling Original data GEO bulk
65 toc1-1-85hr -0.53 >More info -0.42 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
66 Laer pretreat GA+JA Flg22 2h 0.53 >More info 0.40 >More info Laer pretreat water control leaf discs Original data GEO bulk
67 Differentiation 24h 0.56 >More info 0.37 >More info Differentiation 0h leaves Original data
68 2d red light grown pif1pif3pif4pif5 (pifq) mutant -0.60 >More info -0.33 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
69 piffq FR 3h -0.42 >More info -0.51 >More info WT FR 3h whole seedling Original data GEO bulk
70 eif3h 0.51 >More info 0.41 >More info WT Original data GEO bulk
71 35S:VND7-VP16-GR+CHX 0.36 >More info 0.55 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
72 08h Col-0 0.39 >More info 0.52 >More info 00h Col-0 Original data GEO bulk
73 0h light (+Lincomycin) 0.41 >More info 0.50 >More info 0h light (-Lincomycin) seedlings Original data GEO bulk
74 12h Col-0 0.40 >More info 0.50 >More info 00h Col-0 Original data GEO bulk
75 Col0-PsmES4326-24hpi 0.29 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
76 20h Col-0 0.32 >More info 0.58 >More info 00h Col-0 Original data GEO bulk
77 esd7-1 0.50 >More info 0.39 >More info Ler seedlings Original data GEO bulk
78 Blue Light 4 h -0.26 >More info -0.63 >More info White Light 4 h Original data Light treatments
79 seedling 12h after Gamma atm-1 0.35 >More info 0.54 >More info seedling day 1 unirradiated atm-1 12h Original data
80 Leafminer damaged seedlings 0.32 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
81 Red Light 45min 0.28 >More info 0.60 >More info White Light 45min Original data Light treatments
82 col-5 DC3000 12h 0.37 >More info 0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
83 Laer pretreat GA+JA Flg22 1h 0.55 >More info 0.31 >More info Laer pretreat water control leaf discs Original data GEO bulk
84 abi4-102 -lincomycin 0.56 >More info 0.30 >More info Col-0 -lincomycin Original data GEO bulk
85 Seedling KUA1-IOX est 0.21 >More info 0.65 >More info Seedling KUA1-IOX mock Original data
86 gul2-1 bri1-5 mutant 0.54 >More info 0.31 >More info WT 7 day-old whole seedlings Original data
87 cpr5npr1svi1 0.33 >More info 0.52 >More info WT(COL) Original data GEO bulk
88 WT-16ºC 0.53 >More info 0.30 >More info WT-23ºC Original data GEO bulk
89 Col-0 low R/FR 0.31 >More info 0.51 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
90 seedling 12h after Gamma WT 0.30 >More info 0.51 >More info seedling day 1 unirradiated WT 12h Original data
91 Laer pretreat GA+JA Flg22 0h 0.53 >More info 0.27 >More info Laer pretreat water control leaf discs Original data GEO bulk
92 root - 08% oxygen - 30min 0.12 >More info 0.67 >More info root - 21% oxygen - 30min Original data GEO bulk
93 npr1 0.19 >More info 0.60 >More info WT(COL) Original data GEO bulk
94 Laer pretreat JA Flg22 2h 0.52 >More info 0.25 >More info Laer pretreat water control leaf discs Original data GEO bulk
95 Col BTH 0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
96 Laer pretreat JA Flg22 1h 0.50 >More info 0.25 >More info Laer pretreat water control leaf discs Original data GEO bulk
97 Heat -0.53 >More info -0.22 >More info Control 90 minutes at 38°C. Original data GEO bulk
98 etiolated cop1 -0.79 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
99 MYB46-GR DEX 0.24 >More info 0.51 >More info MYB46-GR mock Young rosette leaves (5-7th) Original data GEO bulk
100 Red/FR Light45min 0.06 >More info 0.68 >More info FarRed Light 45min Original data Light treatments
101 dorn1-1 Root 100 mM ATP 30 min 0.54 >More info 0.18 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
102 4C 1h -0.17 >More info -0.54 >More info 4C 0h Original data GEO bulk
103 seed germinating in countinuous light 24h SL 0.03 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
104 35S::ERF104 H2O 4h -0.51 >More info -0.18 >More info Col-0 H2O 4h Original data GEO bulk
105 IAA7mII over-expressor IAA Treated 0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
106 Polysomal RNA 35S:AtCSP1-FH1 cold 0.07 >More info 0.55 >More info Polysomal RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
107 ML (Mature leaves) 35DAS -0.51 >More info -0.10 >More info Control for tissue data Original data GEO bulk
108 Shoot apex inflorescence (after bolting) -0.07 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
109 root longitudinal zone-2 -Fe 0.07 >More info 0.50 >More info root longitudinal zone-2 standard Original data GEO bulk
110 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
111 siliques AtHb1 control -0.02 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
112 Elevated CO2 LIMITING N DAY 0.07 >More info -0.53 >More info Elevated CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
113 cat2-2; 8h switch to ambient CO2 concentrations; -0.15 >More info 0.52 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
114 bri1-116 -0.55 >More info 0.73 >More info Col seedling Original data GEO bulk