4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on phyB Dark
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List of experiments correlated with "phyB Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
phyB Dark		 Correlation to
phyB Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 phyB Dark 1.00 >More info 1.00 >More info WT(Ler) Dark Original data GEO bulk
2 phyAphyB Dark -0.97 >More info -0.97 >More info phyB Dark Original data GEO bulk
3 WT(Ler) Rc50 0.90 >More info 0.92 >More info WT(Ler) Dark Original data GEO bulk
4 WT Rc50 0.90 >More info 0.91 >More info WT Dark red light whole seedling Original data GEO bulk
5 WT(Ler) Rc15 0.87 >More info 0.88 >More info WT(Ler) Dark Original data GEO bulk
6 etiolated cop1BBX22-GFPox 0.85 >More info 0.85 >More info etiolated Col-0 whole seedlings Original data GEO bulk
7 WT Red light 18h 0.82 >More info 0.81 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
8 Light 4h polysome-bound 0.78 >More info 0.75 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
9 CabpBVR2 -0.75 >More info -0.78 >More info WT Original data GEO bulk
10 Light 4h steady-state 0.77 >More info 0.75 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
11 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.76 >More info 0.71 >More info 2d dark-grown WT seedling Original data GEO bulk
12 35SpBVR3 -0.73 >More info -0.73 >More info WT Original data GEO bulk
13 WT light 0.71 >More info 0.70 >More info WT dark Original data GEO bulk
14 WT Seedling BL 0.67 >More info 0.71 >More info WT Seedling Dark Original data GEO bulk
15 csn5 (csn5a-2 csn5b) dark 0.71 >More info 0.64 >More info WT dark Original data GEO bulk
16 aerial organ callus inducing medium 96 h -0.66 >More info -0.69 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
17 WT Red light 1h 0.66 >More info 0.68 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
18 aerial organ callus inducing medium 48 h -0.67 >More info -0.67 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
19 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.68 >More info 0.65 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
20 csn4-1 mutant 0.70 >More info 0.61 >More info WT dark Original data GEO bulk
21 aerial organ callus inducing medium 12 h -0.64 >More info -0.66 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
22 csn3-1 dark 0.69 >More info 0.61 >More info WT dark Original data GEO bulk
23 cop1 Seedling Dark 0.60 >More info 0.69 >More info WT Seedling Dark Original data GEO bulk
24 Light 0.5h polysome-bound 0.57 >More info 0.72 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
25 2d dark-grown WT(Col-0)/1 hr red light 0.61 >More info 0.68 >More info 2d dark-grown WT seedling Original data GEO bulk
26 phr1 Shoot-Pi 0.67 >More info 0.61 >More info WT Root-Pi shoots Original data GEO bulk
27 aerial organ callus inducing medium 24h -0.65 >More info -0.63 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
28 bri1-116 0.55 >More info 0.73 >More info Col seedling Original data GEO bulk
29 Col-7 Sucrose -0.67 >More info -0.57 >More info col-7 Original data GEO bulk
30 atmyc2 cop1 Seedling Dark 0.60 >More info 0.63 >More info WT Seedling Dark Original data GEO bulk
31 pif4pif5 mut 24h FR 0.62 >More info 0.61 >More info WT 24h FR Original data GEO bulk
32 Red/FR Light 4 h -0.54 >More info -0.67 >More info FarRed Light 4 h Original data Light treatments
33 Dark 4 h pls RedLight 1min 0.45 >More info 0.75 >More info Dark 4 h Original data Light treatments
34 phr1 phl1 Root-Pi -0.59 >More info -0.59 >More info WT Shoot+Pi roots Original data GEO bulk
35 Col-0 Root 100 mM ATP 30 min 0.59 >More info 0.58 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
36 toc1-1-85hr 0.53 >More info 0.63 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
37 Col-0 low oxygen -0.61 >More info -0.55 >More info Col-0 Original data GEO bulk
38 Dark 40 min pls UV-A 5 min 0.47 >More info 0.66 >More info Dark 45 min Original data Light treatments
39 phyB Rc50 0.58 >More info 0.54 >More info WT(Ler) Rc50 Original data GEO bulk
40 Dark 4 h pls UV-A 5 min 0.48 >More info 0.64 >More info Dark 4 h Original data Light treatments
41 Dark 44min pls RedLigh 1min 0.45 >More info 0.66 >More info Dark 45 min Original data Light treatments
42 AtGATA2ox 0.58 >More info 0.53 >More info Col seedling Original data GEO bulk
43 Wt-BA-sample -0.54 >More info -0.57 >More info Wt-dmso-sample seedling Original data
44 Light 0.5h steady-state 0.43 >More info 0.66 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
45 Dark 4 h pls UV-AB 5min 0.60 >More info 0.48 >More info Dark 4 h Original data Light treatments
46 elf3-7-23ºC -0.39 >More info -0.69 >More info WT-23ºC Original data GEO bulk
47 toc1-1-89hr 0.44 >More info 0.63 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
48 gul2-1 mutant -0.60 >More info -0.47 >More info WT 7 day-old whole seedlings Original data
49 pif3 Dark 0h 0.50 >More info 0.56 >More info WT Dark 0h etiolated seedling Original data GEO bulk
50 FarRed Light 4 h 0.41 >More info 0.65 >More info White Light 4 h Original data Light treatments
51 tt4 0.41 >More info 0.65 >More info WT aerial region Original data GEO bulk
52 Inflorescence miR-NGA -0.50 >More info -0.52 >More info Inflorescence wt Original data GEO bulk
53 Red Light 4 h -0.47 >More info -0.55 >More info White Light 4 h Original data Light treatments
54 CCA14 dark late -0.63 >More info -0.38 >More info Col dark late Original data GEO bulk
55 16h Col-0 -0.39 >More info -0.62 >More info 00h Col-0 Original data GEO bulk
56 Differentiation 36h -0.59 >More info -0.41 >More info Differentiation 0h leaves Original data
57 pif4pif5 high R/FR 0.42 >More info 0.58 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
58 pif3 Dark 1h 0.45 >More info 0.54 >More info WT Dark 1h etiolated seedling Original data GEO bulk
59 Differentiation 48h -0.58 >More info -0.40 >More info Differentiation 0h leaves Original data
60 Differentiation 12h -0.50 >More info -0.46 >More info Differentiation 0h leaves Original data
61 35S:VND7-VP16-GR+CHX -0.35 >More info -0.60 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
62 08h Col-0 -0.40 >More info -0.54 >More info 00h Col-0 Original data GEO bulk
63 2d red light grown pif1pif3pif4pif5 (pifq) mutant 0.60 >More info 0.34 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
64 Red Light 45min -0.31 >More info -0.63 >More info White Light 45min Original data Light treatments
65 20h Col-0 -0.35 >More info -0.59 >More info 00h Col-0 Original data GEO bulk
66 Differentiation 24h -0.56 >More info -0.37 >More info Differentiation 0h leaves Original data
67 eif3h polysome -0.50 >More info -0.43 >More info WT polysome Original data GEO bulk
68 Laer pretreat GA+JA Flg22 2h -0.52 >More info -0.41 >More info Laer pretreat water control leaf discs Original data GEO bulk
69 12h Col-0 -0.42 >More info -0.51 >More info 00h Col-0 Original data GEO bulk
70 fri-flc -0.41 >More info -0.52 >More info WT Original data GEO bulk
71 Blue Light 4 h 0.26 >More info 0.66 >More info White Light 4 h Original data Light treatments
72 glk1 glk2 GLK1-GR +DEX 4h 0.42 >More info 0.50 >More info glk1 glk2 GLK1-GR mock 4h dexamethasone whole seedlings Original data GEO bulk
73 eif3h -0.51 >More info -0.40 >More info WT Original data GEO bulk
74 gul2-1 bri1-5 mutant -0.53 >More info -0.37 >More info WT 7 day-old whole seedlings Original data
75 Mutant sav3-2 (WL) 0.32 >More info 0.57 >More info Col-0 (WL) Original data GEO bulk
76 sav3-2 light 0.32 >More info 0.57 >More info Col-0 light seedlings Original data GEO bulk
77 WT-16ºC -0.53 >More info -0.35 >More info WT-23ºC Original data GEO bulk
78 phyB mutant 22C 10hrs -0.33 >More info -0.54 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
79 seedling 12h after Gamma atm-1 -0.34 >More info -0.53 >More info seedling day 1 unirradiated atm-1 12h Original data
80 ABA control -0.31 >More info -0.55 >More info No ABA control Original data GEO bulk
81 Seedling KUA1-IOX est -0.21 >More info -0.65 >More info Seedling KUA1-IOX mock Original data
82 Laer pretreat GA+JA Flg22 1h -0.54 >More info -0.31 >More info Laer pretreat water control leaf discs Original data GEO bulk
83 abi4-102 -lincomycin -0.55 >More info -0.29 >More info Col-0 -lincomycin Original data GEO bulk
84 Red/FR Light45min -0.08 >More info -0.76 >More info FarRed Light 45min Original data Light treatments
85 Heat 0.53 >More info 0.30 >More info Control 90 minutes at 38°C. Original data GEO bulk
86 etiolated cop1 0.79 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
87 dorn1-1 Root 100 mM ATP 30 min -0.54 >More info -0.27 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
88 Col-0 low R/FR -0.31 >More info -0.50 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
89 Laer pretreat JA Flg22 2h -0.53 >More info -0.26 >More info Laer pretreat water control leaf discs Original data GEO bulk
90 pif5 high R/FR 0.29 >More info 0.50 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
91 ACN1-2 0.20 >More info 0.59 >More info col-7 Original data GEO bulk
92 Laer pretreat GA+JA Flg22 0h -0.51 >More info -0.27 >More info Laer pretreat water control leaf discs Original data GEO bulk
93 npr1 -0.18 >More info -0.59 >More info WT(COL) Original data GEO bulk
94 Anoxia 0.50 >More info 0.26 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
95 4C 1h 0.15 >More info 0.59 >More info 4C 0h Original data GEO bulk
96 35S::ERF104 H2O 4h 0.50 >More info 0.23 >More info Col-0 H2O 4h Original data GEO bulk
97 sav1-1 light 0.23 >More info 0.50 >More info Col-0 light seedlings Original data GEO bulk
98 root - 08% oxygen - 30min -0.13 >More info -0.59 >More info root - 21% oxygen - 30min Original data GEO bulk
99 IAA7mII over-expressor IAA Treated 0.02 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
100 Shoot apex inflorescence (after bolting) 0.04 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
101 root longitudinal zone-3 -Fe -0.14 >More info -0.50 >More info root longitudinal zone-3 standard Original data GEO bulk
102 Polysomal RNA 35S:AtCSP1-FH1 cold -0.09 >More info -0.55 >More info Polysomal RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
103 seed germinating in countinuous light 24h SL -0.06 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
104 root longitudinal zone-2 -Fe -0.08 >More info -0.53 >More info root longitudinal zone-2 standard Original data GEO bulk
105 light 0.76 >More info -0.18 >More info dark light seedling Original data GEO bulk
106 Col BTH -0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
107 siliques AtHb1 control -0.01 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
108 CCA1-ox 6am non-polysomal -0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
109 WT roots - Fe 0.08 >More info -0.57 >More info WT roots + Fe Roots Original data GEO bulk
110 Elevated CO2 LIMITING N DAY -0.08 >More info 0.55 >More info Elevated CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
111 ptpks2 0.16 >More info -0.53 >More info Col-WT leaves Original data GEO bulk
112 Col0-PsmES4326-24hpi -0.28 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
113 Leafminer damaged seedlings -0.32 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
114 Laer pretreat GA Flg22 1h -0.50 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
115 Heat shock optimum -0.46 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk