4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on cop1 Seedling Dark
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "cop1 Seedling Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
cop1 Seedling Dark		 Correlation to
cop1 Seedling Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 cop1 Seedling Dark 1.00 >More info 1.00 >More info WT Seedling Dark Original data GEO bulk
2 atmyc2 cop1 Seedling Dark 0.91 >More info 0.87 >More info WT Seedling Dark Original data GEO bulk
3 WT Seedling BL 0.89 >More info 0.86 >More info WT Seedling Dark Original data GEO bulk
4 CabpBVR2 -0.78 >More info -0.71 >More info WT Original data GEO bulk
5 WT light 0.73 >More info 0.75 >More info WT dark Original data GEO bulk
6 phr1 phl1 Root-Pi -0.78 >More info -0.70 >More info WT Shoot+Pi roots Original data GEO bulk
7 phr1 Shoot-Pi 0.77 >More info 0.69 >More info WT Root-Pi shoots Original data GEO bulk
8 afb3-1 2h KNO3 0.65 >More info 0.80 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
9 bri1-116 0.68 >More info 0.73 >More info Col seedling Original data GEO bulk
10 Col-0 low oxygen -0.73 >More info -0.62 >More info Col-0 Original data GEO bulk
11 Col-0 Root 100 mM ATP 30 min 0.75 >More info 0.58 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
12 etiolated cop1BBX22-GFPox 0.70 >More info 0.63 >More info etiolated Col-0 whole seedlings Original data GEO bulk
13 35SpBVR3 -0.66 >More info -0.67 >More info WT Original data GEO bulk
14 atmyc2 Seedling Dark 0.66 >More info 0.66 >More info WT Seedling Dark Original data GEO bulk
15 csn5 (csn5a-2 csn5b) dark 0.67 >More info 0.62 >More info WT dark Original data GEO bulk
16 phyB Dark 0.69 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
17 WT Rc50 0.66 >More info 0.62 >More info WT Dark red light whole seedling Original data GEO bulk
18 phyAphyB Dark -0.68 >More info -0.59 >More info phyB Dark Original data GEO bulk
19 aerial organ callus inducing medium 96 h -0.61 >More info -0.65 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
20 WT(Ler) Rc15 0.61 >More info 0.62 >More info WT(Ler) Dark Original data GEO bulk
21 WT Red light 18h 0.57 >More info 0.65 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
22 csn4-1 mutant 0.64 >More info 0.58 >More info WT dark Original data GEO bulk
23 WT(Ler) Rc50 0.60 >More info 0.61 >More info WT(Ler) Dark Original data GEO bulk
24 csn3-1 dark 0.64 >More info 0.57 >More info WT dark Original data GEO bulk
25 Light 4h polysome-bound 0.61 >More info 0.56 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
26 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.62 >More info 0.52 >More info 2d dark-grown WT seedling Original data GEO bulk
27 Dark 4 h pls UV-A 5 min 0.44 >More info 0.70 >More info Dark 4 h Original data Light treatments
28 phyABDE Rc50 0.60 >More info 0.53 >More info phyABDE Dark red light whole seedling Original data GEO bulk
29 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.65 >More info 0.47 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
30 aerial organ callus inducing medium 48 h -0.59 >More info -0.53 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
31 abh1 -ABA -0.36 >More info -0.76 >More info Col-0 -ABA Original data GEO bulk
32 vtc2 mature somatic embryo 0.69 >More info 0.43 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
33 T6 leaf-drought -0.56 >More info -0.55 >More info T6 leaf-well watered Original data GEO bulk
34 root - 04% oxygen - 48h 0.61 >More info 0.49 >More info root - 21% oxygen - 48h Original data GEO bulk
35 Differentiation 48h -0.62 >More info -0.48 >More info Differentiation 0h leaves Original data
36 seedling -S Exp -0.65 >More info -0.44 >More info seedling FN Exp seedling Original data
37 Sulfometuron EC50 -0.63 >More info -0.46 >More info Carrier Original data GEO bulk
38 low water potential -0.62 >More info -0.47 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
39 cat2-2; 8h switch to ambient CO2 concentrations; -0.58 >More info -0.50 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
40 2hr continuous KNO3 ECR cell -0.41 >More info -0.67 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
41 Imidazolinone EC50 -0.62 >More info -0.45 >More info Carrier (Imidazolinone) Original data GEO bulk
42 Dark 4 h pls RedLight 1min 0.34 >More info 0.73 >More info Dark 4 h Original data Light treatments
43 C58 35dpi -0.58 >More info -0.49 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
44 Light 4h steady-state 0.54 >More info 0.52 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
45 Differentiation 36h -0.61 >More info -0.45 >More info Differentiation 0h leaves Original data
46 WT Root Hypoxia 0.57 >More info 0.49 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
47 35S:VND7-VP16-GR+CHX -0.56 >More info -0.50 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
48 eto1-4 + AVG -0.48 >More info -0.58 >More info eto1-4 whole seedling Original data GEO bulk
49 Shoot -Cs -0.48 >More info -0.58 >More info Control-shoot Original data GEO bulk
50 dorn1-1 Root MES buffer 30 min 0.49 >More info 0.57 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
51 DC3000 7h -0.49 >More info -0.56 >More info Mock 7h DC3000 Original data GEO bulk
52 T101D 10mM NH4NO3 -0.48 >More info -0.57 >More info col 10mM NH4NO3 Root Original data
53 Differentiation 12h -0.59 >More info -0.45 >More info Differentiation 0h leaves Original data
54 Botrytis cinerea 48h -0.56 >More info -0.48 >More info control 48h Original data GEO bulk
55 hrpA 7h -0.58 >More info -0.46 >More info Mock 7h hrpA Original data GEO bulk
56 NAA -AA -0.56 >More info -0.47 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
57 SCL3 OE -0.72 >More info -0.31 >More info Col-0 whole root Original data GEO bulk
58 col-5 hrpA 12h -0.50 >More info -0.53 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
59 HopZ1a treated -0.60 >More info -0.43 >More info col Original data GEO bulk
60 Laer pretreat GA+JA Flg22 2h -0.54 >More info -0.48 >More info Laer pretreat water control leaf discs Original data GEO bulk
61 Shoot apex inflorescence (after bolting) 0.37 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
62 erf104-ko Flg22 4h -0.57 >More info -0.43 >More info erf104-ko H2O 4h Original data GEO bulk
63 Laer treat paclobutrazol (PAC) -0.50 >More info -0.50 >More info Laer Control leaf discs Original data GEO bulk
64 cngc19 -0.65 >More info -0.35 >More info Col-0 root Original data GEO bulk
65 E.coli 0157 H7 7h -0.47 >More info -0.53 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
66 Cor 10h -0.48 >More info -0.52 >More info Mock 10h Cor Original data GEO bulk
67 eif3h polysome -0.46 >More info -0.53 >More info WT polysome Original data GEO bulk
68 AvrRpt2 Col-0 6hpi -0.58 >More info -0.40 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
69 WT (Col-0) inflorescence moderate drought day 3 -0.57 >More info -0.41 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
70 aerial organ callus inducing medium 24h -0.54 >More info -0.44 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
71 WT (Col-0) inflorescence moderate drought day 10 -0.54 >More info -0.43 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
72 rosettes WT drought -0.59 >More info -0.38 >More info rosettes WT watered Original data GEO bulk
73 WT in -N -0.55 >More info -0.42 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
74 35S:MYB28 like miR 0.35 >More info 0.62 >More info WT for miR Original data GEO bulk
75 estradiol induced LEC1 -0.58 >More info -0.38 >More info control Original data GEO bulk
76 tumour -0.52 >More info -0.44 >More info non-tumor tumour Original data GEO bulk
77 pif3 Dark 0h 0.54 >More info 0.42 >More info WT Dark 0h etiolated seedling Original data GEO bulk
78 Estradiol4 days -0.58 >More info -0.38 >More info Col Original data GEO bulk
79 SAM SE agl15 agl18 double mutant 0.53 >More info 0.42 >More info SAM SE Col Original data GEO bulk
80 Norflurazon -0.51 >More info -0.44 >More info Col-0 Original data GEO bulk
81 dor drought -0.52 >More info -0.43 >More info WT drought Original data GEO bulk
82 Differentiation 24h -0.58 >More info -0.37 >More info Differentiation 0h leaves Original data
83 Norflurazon -0.51 >More info -0.44 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
84 GO5; 8h switch to ambient CO2 concentrations; -0.52 >More info -0.42 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
85 Mutant gh3.5-1D (AvrRpt2) -0.44 >More info -0.50 >More info Col-0 (AvrRpt2) Original data GEO bulk
86 pif3 Dark 1h 0.44 >More info 0.50 >More info WT Dark 1h etiolated seedling Original data GEO bulk
87 WT-SA -0.53 >More info -0.40 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
88 eif3h -0.38 >More info -0.55 >More info WT Original data GEO bulk
89 shoot hypoxia pSUC2 -0.59 >More info -0.34 >More info shoot hypoxia total Original data GEO bulk
90 mutant acs5C (single mutant) -0.52 >More info -0.40 >More info col control (single mutant) Original data GEO bulk
91 PAHs stress -0.55 >More info -0.37 >More info exp control phenanthrene whole plants Original data GEO bulk
92 pif4pif5 mut dark 0.28 >More info 0.64 >More info WT dark Original data GEO bulk
93 rosettes myoox drought -0.62 >More info -0.30 >More info rosettes myoox watered Original data GEO bulk
94 35S:ATR1 like miR 0.33 >More info 0.59 >More info WT for miR Original data GEO bulk
95 Laer pretreat GA+JA Flg22 1h -0.53 >More info -0.37 >More info Laer pretreat water control leaf discs Original data GEO bulk
96 ckh2 CK0 0.40 >More info 0.50 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
97 Laer pretreat GA+JA Flg22 0h -0.52 >More info -0.37 >More info Laer pretreat water control leaf discs Original data GEO bulk
98 ckh2 CK200 0.51 >More info 0.38 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
99 HopZ1a treated ulp1c ulp1d -0.51 >More info -0.38 >More info col Original data GEO bulk
100 mpk6-ko Flg22 4h -0.39 >More info -0.50 >More info mpk6-ko H2O 4h Original data GEO bulk
101 arr-BA-sample 0.38 >More info 0.51 >More info Wt-BA-sample seedling Original data
102 mdh -0.57 >More info -0.32 >More info Col Original data GEO bulk
103 ckh2 CK25 0.34 >More info 0.54 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
104 WT-16ºC -0.35 >More info -0.53 >More info WT-23ºC Original data GEO bulk
105 L2.4 mutant 0.36 >More info 0.52 >More info Wt Original data GEO bulk
106 2hr transitory KNO3 ECR cell -0.31 >More info -0.57 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
107 Seedling KUA1-IOX est -0.30 >More info -0.58 >More info Seedling KUA1-IOX mock Original data
108 WT leaf-drought -0.53 >More info -0.33 >More info WT leaf-well watered Original data GEO bulk
109 6m.KCl 0.51 >More info 0.35 >More info To. KCl 14 day old Roots Original data GEO bulk
110 T8 leaf-drought -0.50 >More info -0.34 >More info T8 leaf-well watered Original data GEO bulk
111 Rosette leaf No12 0.59 >More info 0.25 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
112 MPK6 ox Root Hypoxia 0.60 >More info 0.24 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
113 Pto inoculated -0.56 >More info -0.27 >More info col Original data GEO bulk
114 miR393 0h 0.53 >More info 0.29 >More info WT 0h Leaf tissue Original data GEO bulk
115 Ambient CO2 expanding leaf 0.55 >More info 0.27 >More info Control for tissue data expanding leaf Original data
116 ABA control -0.50 >More info -0.31 >More info No ABA control Original data GEO bulk
117 Expanding leaf 0.58 >More info 0.23 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
118 rrd2 IBA 0.50 >More info 0.30 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
119 npr1 -0.20 >More info -0.60 >More info WT(COL) Original data GEO bulk
120 NaCl scm -0.27 >More info -0.53 >More info NaCl Col Original data GEO bulk
121 Proximalhalf (leaf7) 0.58 >More info 0.22 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
122 OH1 -0.50 >More info -0.29 >More info Col-0 leaves Original data GEO bulk
123 Ambient CO2 fully expanded leaf 0.55 >More info 0.24 >More info Control for tissue data fully expanded leaf Original data
124 shoot control pSUC2 -0.50 >More info -0.29 >More info shoot control total Original data GEO bulk
125 seed germinating in countinuous light 24h SL 0.12 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
126 WT cotyledons 0.51 >More info 0.27 >More info Control for tissue data cotyledons Original data
127 NaCl wermyb2 -0.27 >More info -0.51 >More info NaCl Col Original data GEO bulk
128 WT roots - Fe -0.09 >More info -0.69 >More info WT roots + Fe Roots Original data GEO bulk
129 3m.KCl 0.51 >More info 0.26 >More info To. KCl 14 day old Roots Original data GEO bulk
130 Cotyledons 0.58 >More info 0.19 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
131 Distal half (leaf7) 0.57 >More info 0.20 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
132 IAA7mII over-expressor IAA Treated 0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
133 Ambient CO2 leaf primordia 0.51 >More info 0.23 >More info Control for tissue data leaf primordia Original data
134 leaf 0.53 >More info 0.21 >More info Control for tissue data leaf Original data GEO bulk
135 etiolated cop1 0.70 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
136 Red Light 4 h -0.21 >More info -0.52 >More info White Light 4 h Original data Light treatments
137 3.5h KNO3 Whole root -0.23 >More info -0.50 >More info 3.5h KCl control Whole root Whole root Original data GEO bulk
138 Shoot apex vegetative &Young leaves 0.53 >More info 0.19 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
139 P. infestans 6 h (leaf) -0.56 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
140 Rosette leaf No2 0.56 >More info 0.15 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
141 Col PSTDC3000 24h -0.58 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
142 Petiol (leaf7) 0.53 >More info 0.17 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
143 Col-7 Sucrose -0.50 >More info -0.20 >More info col-7 Original data GEO bulk
144 Pedicels stage15 0.50 >More info 0.19 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
145 24h volatiles Sp. HRO-C48 0.11 >More info 0.57 >More info 24h untreated whole seedling Original data GEO bulk
146 GRX-overexpression seedlings NaCl 0.06 >More info 0.59 >More info WT seedlings NaCl Seedlings Original data GEO bulk
147 35S:RPS4 eds1-2 T0 -0.08 >More info -0.57 >More info 35S:RPS4 T0 leaves Original data
148 GRX-overexpression seedlings MV -0.12 >More info -0.51 >More info WT seedlings MV Seedlings Original data GEO bulk
149 agb1 -ABA GC 0.07 >More info 0.55 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
150 cngc1-3 -0.55 >More info -0.04 >More info Col-0 root Original data GEO bulk
151 6h volatiles Sm. R3089 -0.51 >More info -0.08 >More info 6h untreated whole seedling Original data GEO bulk
152 shoot hypoxia p35S -0.04 >More info -0.53 >More info shoot hypoxia total Original data GEO bulk
153 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
154 xyl-grown cell culture- 1h 1mM Suc 0.05 >More info -0.55 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
155 light 0.66 >More info -0.18 >More info dark light seedling Original data GEO bulk
156 siliques AtHb1 control -0.05 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
157 Heat shock optimum -0.23 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
158 Col BTH -0.29 >More info 0.67 >More info Col rosettes Original data GEO bulk
159 dorn1-1 Root 100 mM ATP 30 min -0.51 >More info 0.15 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
160 sfr3 cold -0.55 >More info 0.25 >More info WT-cold aerial tissues Original data GEO bulk
161 -Sulfate 24 h 0.30 >More info -0.54 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
162 Leafminer damaged seedlings -0.34 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
163 AtMYB30-ox 2-4h Xanthomonas -0.50 >More info 0.28 >More info WT 2-4h Xanthomonas Original data GEO bulk
164 Laer pretreat GA Flg22 1h -0.49 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
165 Col0-PsmES4326-24hpi -0.60 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk