4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 2 hr Hypoxia IP RNA
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List of experiments correlated with "2 hr Hypoxia IP RNA"  Help Download transcriptome of top 30
Score Experiment Correlation from
2 hr Hypoxia IP RNA		 Correlation to
2 hr Hypoxia IP RNA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 2 hr Hypoxia IP RNA 1.00 >More info 1.00 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
2 2 hr Hypoxia Total RNA 0.87 >More info 0.87 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
3 Col-0 2HS 0.85 >More info 0.88 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
4 9 hr Hypoxia IP RNA 0.87 >More info 0.84 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
5 shoot hypoxia total 0.80 >More info 0.84 >More info shoot control total Original data GEO bulk
6 WT Shoot Hypoxia 0.78 >More info 0.84 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
7 Col-0 wt Hypoxic 0.74 >More info 0.82 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
8 9 hr Hypoxia Total RNA 0.78 >More info 0.76 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
9 root hypoxia total 0.73 >More info 0.77 >More info root control total Original data GEO bulk
10 MPK6 ox Shoot Hypoxia 0.76 >More info 0.73 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
11 roottip hypoxia total 0.69 >More info 0.79 >More info roottip control total Original data GEO bulk
12 WT Root Hypoxia 0.66 >More info 0.79 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
13 root - 01% oxygen - 2h 0.59 >More info 0.82 >More info root - 21% oxygen - 2h Original data GEO bulk
14 Anoxia 0.59 >More info 0.76 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
15 Col-0 low oxygen 0.68 >More info 0.64 >More info Col-0 control low oxygen root Original data GEO bulk
16 9 hr Hypoxia 1 hr recovery Total RNA 0.64 >More info 0.64 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
17 10min Reillumination IP RNA -0.58 >More info -0.69 >More info 1h Dark IP RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
18 MPK6 ox Root Hypoxia 0.67 >More info 0.57 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
19 9 hr Hypoxia 1 hr recovery IP RNA 0.60 >More info 0.64 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
20 1 h Light IP RNA -0.60 >More info -0.58 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
21 Seedling-HeatStressed POLYSOMESmRNA 0.55 >More info 0.62 >More info Seedling-control POLYSOMESmRNA seedling Original data
22 FHY3p dark+DEX -0.62 >More info -0.54 >More info FHY3p dark+mock Original data GEO bulk
23 Aerobic e1 ate2 0.43 >More info 0.73 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
24 WT seedlings MV 0.44 >More info 0.68 >More info WT seedlings control Seedlings Original data GEO bulk
25 estradiole-induced ANAC059 -0.57 >More info -0.54 >More info transgenic (empty vector inducible system) Original data GEO bulk
26 root - 08% oxygen - 2h 0.32 >More info 0.78 >More info root - 21% oxygen - 2h Original data GEO bulk
27 WT+H2O2 0.46 >More info 0.63 >More info WT H2O2 Original data GEO bulk
28 root - 08% oxygen - 30min 0.28 >More info 0.80 >More info root - 21% oxygen - 30min Original data GEO bulk
29 root - 04% oxygen - 2h 0.33 >More info 0.75 >More info root - 21% oxygen - 2h Original data GEO bulk
30 oligomycin 1 h 0.43 >More info 0.62 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
31 1.5 hr ammonium 0.58 >More info 0.46 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
32 TNT-seedlings 0.33 >More info 0.71 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
33 shoot-10 μM DEX- 6 hr 0.46 >More info 0.58 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
34 root - 01% oxygen - 30min 0.32 >More info 0.71 >More info root - 21% oxygen - 30min Original data GEO bulk
35 SA 4mM 0.36 >More info 0.67 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
36 Aerobic prt6 0.38 >More info 0.64 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
37 10min Reillumination Total RNA -0.31 >More info -0.71 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
38 shoot-10 μM DEX- 12 hr 0.42 >More info 0.59 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
39 shoot-10 μM DEX- 24hr 0.37 >More info 0.64 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
40 ein3 eil1 0.50 >More info 0.50 >More info Col-0 mock Whole seedling Original data GEO bulk
41 IAA/inhibitor A Treated 0.48 >More info 0.52 >More info IAA Treated Original data GEO bulk
42 AgNO3 3 h 0.39 >More info 0.60 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
43 pho1 0.38 >More info 0.61 >More info Col2WT Original data GEO bulk
44 sfr6 drought -0.33 >More info -0.66 >More info WT drought All aerial tissue Original data GEO bulk
45 Cycloheximide 3 h 0.45 >More info 0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
46 vtc2 mature somatic embryo 0.37 >More info 0.61 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
47 estradiole-induced ANAC092 -0.46 >More info -0.51 >More info transgenic (empty vector inducible system) Original data GEO bulk
48 TA induced 0.44 >More info 0.53 >More info Methanol TA Suspension cells Original data GEO bulk
49 low CO2 + light 0.42 >More info 0.55 >More info normal CO2 + light Original data GEO bulk
50 NJ15 0.26 >More info 0.71 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
51 inhibitor A Treated 0.34 >More info 0.62 >More info Negative Control Original data GEO bulk
52 Col0-PsmES4326-24hpi 0.35 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
53 WT AntimycinA 3h 0.44 >More info 0.52 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
54 Seedling-HeatStressed TOTALmRNA 0.41 >More info 0.55 >More info Seedling-control TOTALmRNA seedling Original data
55 WT 3H Cold 0.28 >More info 0.67 >More info WT control Original data GEO bulk
56 Col-Luc WT 3h antimycin A 0.51 >More info 0.44 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
57 root - 04% oxygen - 48h 0.20 >More info 0.75 >More info root - 21% oxygen - 48h Original data GEO bulk
58 root - 04% oxygen - 30min 0.25 >More info 0.70 >More info root - 21% oxygen - 30min Original data GEO bulk
59 Heat and anoxia 0.44 >More info 0.51 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
60 3x(m) 0.18 >More info 0.77 >More info 2x two week old seedlings Original data
61 flu 0.37 >More info 0.56 >More info WT Col Original data GEO bulk
62 plant (tga2-5-6) 4h phytoprostane A1 0.31 >More info 0.62 >More info plant (tga2-5-6) 4h control Original data GEO bulk
63 WT 1wk -P 0.42 >More info 0.51 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
64 6h +Pi -0.41 >More info -0.52 >More info 6h -Pi root Original data GEO bulk
65 whole roots 140 mM NaCl 30 minutes 0.36 >More info 0.57 >More info whole roots standard Original data GEO bulk
66 ein2-1 9 hpi A. brassicicola 0.41 >More info 0.52 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
67 ein3 eil1 JA 0.37 >More info 0.55 >More info JA Whole seedling Original data GEO bulk
68 CeO2 germinant -0.39 >More info -0.53 >More info Millipore Water germinant CeO2 seedling Original data
69 1h +Pi -0.32 >More info -0.60 >More info 1h -Pi root Original data GEO bulk
70 cat2-2; 8h switch to ambient CO2 concentrations; 0.34 >More info 0.58 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
71 SCR-GR Time 12H Dex 0.53 >More info 0.38 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
72 pmr5 0.40 >More info 0.51 >More info Col-0 Original data GEO bulk
73 Leafminer damaged seedlings 0.34 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
74 root hypoxia pPEP 0.52 >More info 0.38 >More info root hypoxia total hypoxia root Original data GEO bulk
75 WT H2O2 3h 0.33 >More info 0.57 >More info WT water 3h 3h_H2O2 Original data GEO bulk
76 Col upon hypoxia 6 hrs 0.53 >More info 0.36 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
77 inhibitor B Treated 0.32 >More info 0.57 >More info Negative Control Original data GEO bulk
78 WT+chitooctaose 0.30 >More info 0.59 >More info WT+water chitooctaose seedlings Original data GEO bulk
79 cat2-short-day 2d 0.32 >More info 0.56 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
80 WT-Dry 0.34 >More info 0.54 >More info WT-CK dehydration treatment 1h Original data
81 root callus inducing medium 24h -0.52 >More info -0.36 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
82 Col in Pi deficiency medium 0.35 >More info 0.53 >More info Col in control medium root Original data GEO bulk
83 dorn1-1 Root 100 mM ATP 30 min -0.37 >More info -0.50 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
84 Col BTH 0.19 >More info 0.67 >More info Col rosettes Original data GEO bulk
85 5-Triiodobenzoic acid3 h 0.24 >More info 0.62 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
86 IAA7mII over-expressor IAA Treated 0.16 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
87 WT drought 0.27 >More info 0.58 >More info WT control All aerial tissue Original data GEO bulk
88 3x(p) 0.28 >More info 0.56 >More info 2x two week old seedlings Original data
89 root callus inducing medium 48 h -0.50 >More info -0.33 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
90 wnk8-1 untreated -0.32 >More info -0.51 >More info Col-0 untreated seedlings Original data GEO bulk
91 Col ozone 3h 0.26 >More info 0.57 >More info Col clean-air 3h ozone Original data GEO bulk
92 35S:RPS4 eds1-2 2h -0.26 >More info -0.57 >More info 35S:RPS4 2h leaves Original data
93 oas-a1.1 root -0.28 >More info -0.54 >More info WT-Untreated Root Original data GEO bulk
94 pXVE:HA-EDM2-a untreated -0.28 >More info -0.53 >More info Col-0 untreated seedlings Original data GEO bulk
95 root callus inducing medium 96 h -0.50 >More info -0.30 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
96 ARR22-ox (t-zeatin 3 h) 0.50 >More info 0.30 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
97 npr1-3 DCA 48h 0.19 >More info 0.61 >More info npr1-3 MOCK 48h Original data GEO bulk
98 4C 1h 0.23 >More info 0.57 >More info 4C 0h Original data GEO bulk
99 35S::PI ap3-3 35S::AP-GR +DEX 0.10 >More info 0.69 >More info 0hr DEX Original data GEO bulk
100 flu dark 8hours/30 minute light 0.26 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
101 root - 08% oxygen - 48h 0.07 >More info 0.71 >More info root - 21% oxygen - 48h Original data GEO bulk
102 RRE2 Chitin 0.51 >More info 0.26 >More info Chitin Original data GEO bulk
103 4C 2h(SOIL) 0.20 >More info 0.57 >More info 4C 0h(SOIL) Original data GEO bulk
104 Hydrogen Peroxide 500 uM 0.18 >More info 0.59 >More info Control RB and PER Hydrogen Peroxide Original data
105 FLIGHT TAGESB plate6 SHOOTS 0.26 >More info 0.51 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
106 Protoplast Induced 0.18 >More info 0.58 >More info Uninduced Original data GEO bulk
107 cat2-short-day 4d 0.23 >More info 0.53 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
108 dark-hs 0.25 >More info 0.51 >More info dark-control seedling Original data
109 pip3 At2g19270 TDNA 9 0.25 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
110 siliques AtHb1 control 0.23 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
111 Leaf wounded 0.22 >More info 0.53 >More info Leaf control vegetative leaf Original data GEO bulk
112 Rose Bengal 0.5 uM 0.13 >More info 0.62 >More info Control RB and PER Rose Bengal Original data
113 ex2 flu dark 8hours/30 minute light 0.16 >More info 0.57 >More info col dark 8hours/30 minute light Original data GEO bulk
114 ein2 1% sucrose 14-day-old 0.20 >More info 0.52 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
115 Laer pretreat GA Flg22 1h -0.01 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
116 Heat shock optimum 0.03 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
117 Got7 UV 0.18 >More info 0.50 >More info Got7 mock UV seedling Original data
118 16C 4hs -0.17 >More info -0.50 >More info L22-4hrs whole plant excluding roots Original data GEO bulk
119 opr3 JA 0.5 h 0.09 >More info 0.58 >More info opr3 0 h Original data GEO bulk
120 Phytoprostane A1 4 h 0.16 >More info 0.50 >More info Col-0 Original data GEO bulk
121 IAA/inhibitor B Treated 0.11 >More info 0.55 >More info IAA Treated Original data GEO bulk
122 bri1-116 -0.08 >More info 0.73 >More info Col seedling Original data GEO bulk
123 amiRAP aerobic -0.14 >More info -0.51 >More info WT aerobic aerobic Original data GEO bulk
124 Whole root - low pH 3H 0.15 >More info 0.50 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
125 nbp35-3/- 0.10 >More info 0.53 >More info WT whole seedling Original data GEO bulk
126 Prohexadione 12 h 0.09 >More info 0.52 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
127 abi1 hypocotyl 0.08 >More info 0.51 >More info Ler hypocotyl hypocotyl Original data GEO bulk
128 seedling -S Exp 0.08 >More info 0.50 >More info seedling FN Exp seedling Original data
129 desiccated mature pollen grains -0.04 >More info -0.52 >More info hydrated pollen grains Original data GEO bulk
130 siliques WT hypoxia 0.53 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
131 ex1 flu dark 8hours/30 minute light 0.02 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
132 seed germinating in countinuous light 24h SL -0.15 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
133 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
134 Red/FR Light45min -0.12 >More info 0.63 >More info FarRed Light 45min Original data Light treatments
135 Shoot apex inflorescence (after bolting) -0.22 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages