4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on rGRF
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List of experiments correlated with "rGRF"  Help Download transcriptome of top 30
Score Experiment Correlation from
rGRF
Correlation to
rGRF
Control Experiment Genotype Treatment Tissue Link to
original data
Experimental
Category
Data set
Details
1 rGRF 1.00 >More info 1.00 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
2 rGRF3x35S:GIF 0.90 >More info 0.89 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
3 35S:GIF 0.80 >More info 0.67 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
4 30m light -0.65 >More info -0.72 >More info before light whole seedlings Original data GEO bulk
5 low CO2 + dark 0.65 >More info 0.68 >More info normal CO2 + light Original data GEO bulk
6 petiole in D 0.67 >More info 0.65 >More info petiole in WL petioles Original data GEO bulk
7 Red Light 4 h 0.59 >More info 0.73 >More info White Light 4 h Original data Light treatments
8 leaf blade in D 0.64 >More info 0.61 >More info leaf blade in WL leaf blades Original data GEO bulk
9 cpr5npr1 0.62 >More info 0.62 >More info WT(COL) Original data GEO bulk
10 cpr5scv1 0.57 >More info 0.66 >More info WT(COL) Original data GEO bulk
11 Drought Stress 24 h (shoot) 0.58 >More info 0.65 >More info Stress mock 24 h (shoot) Original data Stress treatments
12 camta1-2 0.51 >More info 0.67 >More info Col-0-WT Original data GEO bulk
13 cpr5npr1svi1 0.57 >More info 0.61 >More info WT(COL) Original data GEO bulk
14 +1.6 mM Tween 20 1 h. 0.61 >More info 0.54 >More info +distilled water 1 h. Original data GEO bulk
15 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.65 >More info 0.48 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
16 Red/FR Light 4 h 0.55 >More info 0.57 >More info FarRed Light 4 h Original data Light treatments
17 6h volatiles Sp. HRO-C48 0.58 >More info 0.54 >More info 6h untreated whole seedling Original data GEO bulk
18 SOS1 0mM NaCl 0.61 >More info 0.51 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
19 3x(p) 0.62 >More info 0.50 >More info 2x two week old seedlings Original data
20 cpr5 0.55 >More info 0.56 >More info WT(COL) Original data GEO bulk
21 Elevated CO2 AMPLE N DAY 0.52 >More info 0.59 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
22 sfr6 drought -0.53 >More info -0.57 >More info WT drought All aerial tissue Original data GEO bulk
23 M6PR transgenic 0mM NaCl 0.61 >More info 0.49 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
24 low CO2 + light 0.49 >More info 0.61 >More info normal CO2 + light Original data GEO bulk
25 tunicamycin -0.73 >More info -0.36 >More info DMF Original data GEO bulk
26 npr1 sni1 ssn2 -0.55 >More info -0.53 >More info npr1 sni1 water water seedling Original data GEO bulk
27 Shoot dark control 24h 0.59 >More info 0.49 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
28 Leafminer damaged seedlings 0.51 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
29 Shoot submergence 24h 0.61 >More info 0.46 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
30 ptpks2 -0.40 >More info -0.67 >More info Col-WT leaves Original data GEO bulk
31 OsSAP11 expressing -0.69 >More info -0.38 >More info WT seedlings Original data GEO bulk
32 cs26 short-day -0.63 >More info -0.43 >More info Leaves-WT-SD leaf Original data GEO bulk
33 CHLM overexpression -0.56 >More info -0.50 >More info Col-0 estr green tissue Original data GEO bulk
34 leaf blade in FRD 0.52 >More info 0.54 >More info leaf blade in WL leaf blades Original data GEO bulk
35 Apex mir-3TCP 14DAS -0.58 >More info -0.47 >More info Apex Col 14DAS Original data GEO bulk
36 Col-0 +lincomycin 0.53 >More info 0.51 >More info Col-0 -lincomycin Original data GEO bulk
37 camta1/2 warm 0.71 >More info 0.33 >More info WT 24h cold entire aerial part Original data GEO bulk
38 Leafminer locally damaged thaliana seedlings 0.51 >More info 0.50 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
39 ein2-1 9 hpi A. brassicicola 0.60 >More info 0.41 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
40 mutant acs6E (single mutant) -0.49 >More info -0.52 >More info col control (single mutant) Original data GEO bulk
41 Laer pretreat GA Flg22 1h 0.30 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
42 petiole in FRD 0.48 >More info 0.53 >More info petiole in WL petioles Original data GEO bulk
43 4h decapitation -0.38 >More info -0.62 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
44 60m light -0.47 >More info -0.53 >More info before light whole seedlings Original data GEO bulk
45 15m.KNO3 0.62 >More info 0.37 >More info To. KNO3 14 day old Roots Original data GEO bulk
46 1 h Light Total RNA -0.42 >More info -0.57 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
47 Wt-BA-sample 0.40 >More info 0.58 >More info Wt-dmso-sample seedling Original data
48 pmr5 pmr6 0.57 >More info 0.40 >More info Col-0 Original data GEO bulk
49 rosette leaves fdh 0.55 >More info 0.42 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
50 edr1 36 h powdery mildew 0.42 >More info 0.55 >More info Col-0 36 h powdery mildew Original data GEO bulk
51 Night Time Treatment -0.40 >More info -0.57 >More info Night Time Control 1hr white light pulse aerial rosette Original data
52 WT AntimycinA 3h 0.56 >More info 0.40 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
53 camta1/3 warm 0.50 >More info 0.46 >More info WT warm entire aerial part Original data GEO bulk
54 npr1 sni1 SA 0.63 >More info 0.33 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
55 UV Stress 24 h (shoot) 0.44 >More info 0.52 >More info Stress mock 24 h (shoot) Original data Stress treatments
56 Atss3 Light4 -0.41 >More info -0.55 >More info Atss3 Dark0.5 Original data GEO bulk
57 seedling 24h after Gamma atm-1 -0.29 >More info -0.67 >More info seedling day 2 unirradiated atm-1 24h Original data
58 gun1-1 +lincomycin -0.56 >More info -0.39 >More info Col-0 +lincomycin Original data GEO bulk
59 vtc2 (I) 0.39 >More info 0.56 >More info Col (I) rosette Original data GEO bulk
60 GV3101 3hpi 0.56 >More info 0.38 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
61 mkk1/mkk2 control rep 0.51 >More info 0.43 >More info Col-0 Time 0 rep Original data GEO bulk
62 ATR1 OE 0.61 >More info 0.32 >More info WT for ATR1/MYB51 Original data GEO bulk
63 seedling 1.5h after HZE atm-1 0.36 >More info 0.57 >More info seedling day 1 unirradiated atm-1 1.5h Original data
64 cca1-lhy 30m light 0.53 >More info 0.39 >More info 30m light whole seedlings Original data GEO bulk
65 Shoot dark control 7h 0.40 >More info 0.52 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
66 Col BTH 0.25 >More info 0.67 >More info Col rosettes Original data GEO bulk
67 camta1/2/3 24h cold 0.65 >More info 0.26 >More info WT 24h cold 24h cold entire aerial part Original data GEO bulk
68 Light 4h steady-state -0.37 >More info -0.54 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
69 seedling 24h after Gamma WT -0.30 >More info -0.61 >More info seedling day 2 unirradiated WT 24h Original data
70 Col-0 9 hpi A. brassicicola 0.51 >More info 0.39 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
71 Light 4h polysome-bound -0.38 >More info -0.52 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
72 35S:LOB-GR DEX -0.58 >More info -0.32 >More info Col DEX dexamethasone seedling Original data GEO bulk
73 CAX1/CAX3 mutant 0.64 >More info 0.25 >More info Col whole plant Original data GEO bulk
74 Flagellin 4 h (leaf) 0.54 >More info 0.35 >More info Mock 4 h (leaf) Original data Elicitor treatments
75 Col0-PsmES4326-24hpi 0.28 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
76 mkk2 24h BTH rep 0.31 >More info 0.58 >More info Col-0 24h BTH rep Original data GEO bulk
77 PRR5-VP 12h light on -0.50 >More info -0.38 >More info WT 12h light on whole plant Original data GEO bulk
78 20m.KCl 0.67 >More info 0.20 >More info To. KCl 14 day old Roots Original data GEO bulk
79 phyB mutant 16C 10hrs -0.56 >More info -0.31 >More info 16C 10h whole plant excluding roots Original data GEO bulk
80 Leafminer systemically damaged thaliana seedlings 0.34 >More info 0.53 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
81 peripheral endosperm pre-globular -0.65 >More info -0.22 >More info whole seed sections pre-globular Original data GEO bulk
82 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.62 >More info 0.25 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
83 seedlings-week-old RECA1-overexpressing
transgenic
0.51 >More info 0.36 >More info seedlings-week-old Col-0 seedlings Original data
84 Heat shock optimum 0.22 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
85 OsRLCK253 expressing -0.36 >More info -0.51 >More info WT seedlings Original data GEO bulk
86 AvrRpm1 2 h (leaf) 0.55 >More info 0.31 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
87 WT 24h cold -0.58 >More info -0.28 >More info WT warm 24h cold entire aerial part Original data GEO bulk
88 penta mutant (higher order mutant) 0.25 >More info 0.61 >More info col control (higher order mutant) Original data GEO bulk
89 WT Na2S -0.32 >More info -0.53 >More info WT water Na2S leaf Original data GEO bulk
90 CHLD reduction -0.57 >More info -0.28 >More info Col-0 dex green tissue Original data GEO bulk
91 35S::CBF2 -0.57 >More info -0.28 >More info Ws2 Original data GEO bulk
92 cpr5 0.50 >More info 0.34 >More info WT seedling Original data GEO bulk
93 1 h Light IP RNA -0.28 >More info -0.56 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
94 pho1 0.59 >More info 0.24 >More info Col2WT Original data GEO bulk
95 Col leaves 120h LT -0.53 >More info -0.29 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
96 21h-DC3000 avrRpm1 -0.32 >More info -0.50 >More info 21h-DC3000 leaves Original data GEO bulk
97 Pseudomonas 0.29 >More info 0.53 >More info Control pseudomonas treated whole seedling Original data GEO bulk
98 Ws-2 high light -0.57 >More info -0.25 >More info Ws-2 low light Original data GEO bulk
99 coi1-16 ein2 sid2 ctrl -0.52 >More info -0.29 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
100 Te ozone 0.53 >More info 0.27 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
101 Col-Luc WT 3h antimycin A 0.53 >More info 0.27 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
102 WT cold -0.26 >More info -0.54 >More info WT control All aerial tissue Original data GEO bulk
103 WT (Col) glucose -0.22 >More info -0.58 >More info WT (Col) glucose seedlings Original data GEO bulk
104 35S:RPS4 rrs1-11 8h -0.54 >More info -0.25 >More info 35S:RPS4 8h leaves Original data
105 Atss3 Light1 -0.18 >More info -0.61 >More info Atss3 Dark0.5 Original data GEO bulk
106 siliques AtHb1 control 0.27 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
107 JA 24h 0.23 >More info 0.56 >More info EtOH 24h 24hr Original data GEO bulk
108 TaFLS overexpression line (OE2) 0.23 >More info 0.56 >More info Col-0 Rosette leaves Original data
109 bHLH122 ox -0.57 >More info -0.22 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
110 SND1XVE -0.62 >More info -0.16 >More info SND1XVE Control cycloheximide+estradiol Original data GEO bulk
111 FarRed Light 4 h -0.20 >More info -0.58 >More info White Light 4 h Original data Light treatments
112 pip3 At2g19270 TDNA 9 0.54 >More info 0.23 >More info Col-0 whole plant Original data GEO bulk
113 4x 0.55 >More info 0.21 >More info 2x two week old seedlings Original data
114 CT101 ozone 0.50 >More info 0.25 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
115 amiRAP hypoxic -0.20 >More info -0.55 >More info hypoxic hypoxia Original data GEO bulk
116 Cor hrpS 10h 0.22 >More info 0.53 >More info Mock 10h Cor hrpS Original data GEO bulk
117 Pst-DC3000(hrpA)-4hpi 0.24 >More info 0.51 >More info Pst-DC3000-4hpi Original data GEO bulk
118 Full AC2 T1 -0.52 >More info -0.22 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
119 TA induced 0.50 >More info 0.24 >More info Methanol TA Suspension cells Original data GEO bulk
120 short 17-degree- -0.16 >More info -0.58 >More info control short Original data GEO bulk
121 aphid saliva treated 0.23 >More info 0.51 >More info control aphid saliva treated leaves Original data GEO bulk
122 Myzus persicae saliva 0.23 >More info 0.51 >More info Control Original data GEO bulk
123 Tsu -Fe 48h Shoots 0.24 >More info 0.50 >More info Tsu +Fe 24h Shoots Original data GEO bulk
124 col-5 hrpA 4h 0.53 >More info 0.19 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
125 WT Atum 2h 0.20 >More info 0.52 >More info WT 0h Leaf tissue Original data GEO bulk
126 D2O 0.18 >More info 0.54 >More info H2O seedling Original data GEO bulk
127 ERF96OE 0.15 >More info 0.57 >More info WT leaf Original data
128 Blue Light 4 h -0.17 >More info -0.54 >More info White Light 4 h Original data Light treatments
129 ape2 high light 0.17 >More info 0.54 >More info Ws-2 high light Original data GEO bulk
130 bri1-116 -0.02 >More info 0.73 >More info Col seedling Original data GEO bulk
131 Day Time Treatment -0.14 >More info -0.57 >More info Day Time Control 1hr white light pulse aerial rosette Original data
132 shoot-10 μM DEX- 6 hr 0.21 >More info 0.50 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
133 php 0.53 >More info 0.17 >More info WT Original data GEO bulk
134 dorn1-1 Root MES buffer 30 min -0.19 >More info -0.51 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
135 aphid infested 0.52 >More info 0.17 >More info control aphid infested Leaves Original data GEO bulk
136 aphid infested 0.52 >More info 0.17 >More info CTR Original data GEO bulk
137 ADD3 -0.19 >More info -0.50 >More info WT aerial part Original data GEO bulk
138 rgs1+sucrose 0.56 >More info 0.12 >More info WT+sucrose rosette leaves Original data GEO bulk
139 iae1 -0.52 >More info -0.16 >More info B179 Original data GEO bulk
140 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
141 PNO8 12 h 0.13 >More info 0.54 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
142 E.orontii Infection 3 day 0.09 >More info 0.58 >More info Uninfection 3 day Original data Elicitor treatments
143 Light 3day wt -0.56 >More info -0.10 >More info 0h wt Original data
144 coi1-16 ein2 sid2 ozone 0.51 >More info 0.15 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
145 12m.KCl 0.55 >More info 0.11 >More info To. KCl 14 day old Roots Original data GEO bulk
146 Mutant ap3-6(shoot apex) -0.52 >More info -0.13 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
147 Whole root - S 3H -0.15 >More info -0.50 >More info Whole root - S 0H Original data GEO bulk
148 DC3000 2 h (leaf) 0.50 >More info 0.14 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
149 Ba1 UV 0.03 >More info 0.61 >More info Ba1 mock UV seedling Original data
150 WT Red light 1h -0.11 >More info -0.53 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
151 long 10-degree- -0.12 >More info -0.51 >More info control long Original data GEO bulk
152 IAA 12h -0.55 >More info -0.07 >More info control 12h root Original data GEO bulk
153 dde2-2 9 hpi A. brassicicola 0.59 >More info 0.03 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
154 seedling -S Exp 0.04 >More info -0.66 >More info seedling FN Exp seedling Original data
155 anti-sense for AtAOX1a 0.09 >More info 0.52 >More info WT Original data GEO bulk
156 tcp14 -0.02 >More info 0.62 >More info WT inflorescences Original data GEO bulk
157 MYB12OX/tt4 0.09 >More info 0.51 >More info Col-0 aerial part Original data
158 C58 3hpi 0.50 >More info 0.09 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
159 tcp13 0.51 >More info 0.07 >More info WT inflorescences Original data GEO bulk
160 CCA1-ox 6am non-polysomal 0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
161 BI-1-3h IAA -0.56 >More info -0.01 >More info BI-1-0h IAA whole plant Original data GEO bulk
162 bam7 untreated -0.51 >More info -0.06 >More info WT untreated none shoot Original data
163 IAA Treated -0.51 >More info -0.06 >More info Negative Control Original data GEO bulk
164 opr3 OPDA 2 h 0.07 >More info 0.50 >More info opr3 0 h Original data GEO bulk
165 tt4 0.04 >More info 0.53 >More info Col-0 aerial part Original data
166 iron minus 0 h 0.52 >More info 0.04 >More info iron +0 h root Original data GEO bulk
167 root cells columella root cap -Fe -0.53 >More info -0.03 >More info whole roots standard Original data GEO bulk
168 gai Control 0.50 >More info 0.05 >More info Laer Control leaf discs Original data GEO bulk
169 aerial organ callus inducing medium 12 h -0.01 >More info 0.56 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
170 IAA 8h -0.54 >More info -0.00 >More info control 8h root Original data GEO bulk
171 -Sulfate 24 h -0.01 >More info -0.53 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
172 Got7 UV 0.04 >More info 0.50 >More info Got7 mock UV seedling Original data
173 GA 120min -0.13 >More info 0.67 >More info CON120 GA 120 min. root tips Original data GEO bulk
174 Shoot submergence 7h 0.53 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
175 Mt SA 0.56 >More info -0.03 >More info Col-0 SA Original data GEO bulk
176 opr3 JA 0.5 h -0.15 >More info 0.68 >More info opr3 0 h Original data GEO bulk
177 G3P -0.01 >More info -0.51 >More info Mock distal leaves Original data GEO bulk
178 MIL4 ox 0.01 >More info 0.51 >More info Col Original data GEO bulk
179 short 12-degree- 0.11 >More info -0.61 >More info control short Original data GEO bulk
180 AmGSTF1 expressor -0.08 >More info 0.57 >More info WT leaf tissue Original data GEO bulk
181 seed germinating in countinuous light 24h SL -0.20 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
182 Truncated AC2 T1 -0.50 >More info 0.03 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
183 root longitudinal zone-3 -Fe -0.55 >More info 0.09 >More info root longitudinal zone-3 standard Original data GEO bulk
184 Laer GA 1h -0.11 >More info 0.57 >More info Laer Control leaf discs Original data GEO bulk
185 Shoot apex inflorescence (after bolting) -0.21 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
186 gpa1 -ABA GC 0.15 >More info -0.58 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
187 Inflorescence miR-NGA -0.60 >More info 0.19 >More info Inflorescence wt Original data GEO bulk
188 vtc1-1 0.15 >More info -0.52 >More info Col-0 whole plant Original data GEO bulk
189 Methyl Jasmonate 3 h -0.17 >More info 0.53 >More info Mock 3 h Original data Basic hormone treatment of seedlings