4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on pif4pif5 mut 1h FR
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List of experiments correlated with "pif4pif5 mut 1h FR"  Help Download transcriptome of top 30
Score Experiment Correlation from
pif4pif5 mut 1h FR		 Correlation to
pif4pif5 mut 1h FR		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 pif4pif5 mut 1h FR 1.00 >More info 1.00 >More info WT 1h FR Original data GEO bulk
2 pif4pif5 mut dark 0.62 >More info 0.87 >More info WT dark Original data GEO bulk
3 WT Red light 18h 0.71 >More info 0.72 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
4 Shoot dark control 24h -0.73 >More info -0.70 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
5 Shoot submergence 24h -0.71 >More info -0.66 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
6 Dark 4 h pls RedLight 1min 0.54 >More info 0.81 >More info Dark 4 h Original data Light treatments
7 pif4pif5 mut 24h FR 0.65 >More info 0.70 >More info WT 24h FR Original data GEO bulk
8 Shoot dark control 7h -0.67 >More info -0.66 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
9 Light 4h steady-state 0.60 >More info 0.72 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
10 low CO2 + dark -0.58 >More info -0.74 >More info normal CO2 + light Original data GEO bulk
11 Light 4h polysome-bound 0.57 >More info 0.71 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
12 WT light 0.66 >More info 0.61 >More info WT dark Original data GEO bulk
13 seedling 1.5h after HZE atm-1 -0.57 >More info -0.68 >More info seedling day 1 unirradiated atm-1 1.5h Original data
14 Dark 4 h pls UV-A 5 min 0.49 >More info 0.75 >More info Dark 4 h Original data Light treatments
15 35SpBVR3 -0.60 >More info -0.61 >More info WT Original data GEO bulk
16 Col-0 C2H4 24h -0.58 >More info -0.63 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
17 detached inflorescences 24h -0.63 >More info -0.55 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
18 Dark 2day hml -0.65 >More info -0.52 >More info 0h hml Original data
19 Dark 2day wt -0.66 >More info -0.51 >More info 0h wt Original data
20 TNT-seedlings -0.46 >More info -0.70 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
21 Dark 3day wt -0.62 >More info -0.52 >More info 0h wt Original data
22 Dark 4 h pls UV-AB 5min 0.55 >More info 0.59 >More info Dark 4 h Original data Light treatments
23 WT (Col) glucose 0.46 >More info 0.67 >More info WT (Col) glucose seedlings Original data GEO bulk
24 low CO2 + light -0.48 >More info -0.65 >More info normal CO2 + light Original data GEO bulk
25 Dark 1day hml -0.66 >More info -0.46 >More info 0h hml Original data
26 phyABDE Rc50 0.54 >More info 0.57 >More info phyABDE Dark red light whole seedling Original data GEO bulk
27 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.57 >More info 0.54 >More info 2d dark-grown WT seedling Original data GEO bulk
28 bri1-116 0.38 >More info 0.73 >More info Col seedling Original data GEO bulk
29 Dark 1day wt -0.68 >More info -0.42 >More info 0h wt Original data
30 WT hypoxia -0.50 >More info -0.59 >More info WT normoxia whole rosette Original data
31 Dark 3day hml -0.61 >More info -0.48 >More info 0h hml Original data
32 CabpBVR2 -0.56 >More info -0.52 >More info WT Original data GEO bulk
33 Nicotinamide-69hr -0.53 >More info -0.55 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
34 Dark 6h ivd -0.65 >More info -0.43 >More info 0h ivd Original data
35 WT(Ler) Rc50 0.62 >More info 0.46 >More info WT(Ler) Dark Original data GEO bulk
36 Dark 1day ivd -0.63 >More info -0.44 >More info 0h ivd Original data
37 ced1 0.49 >More info 0.58 >More info WT PEG 6hr seedlings Original data GEO bulk
38 aerial organ callus inducing medium 96 h -0.53 >More info -0.53 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
39 4d red light grown hmr-5 seedlings -0.47 >More info -0.59 >More info 4d red light grown WT(Col-0) seedlings Original data
40 WT(Ler) Rc15 0.58 >More info 0.47 >More info WT(Ler) Dark Original data GEO bulk
41 DC3000 7h -0.53 >More info -0.51 >More info Mock 7h DC3000 Original data GEO bulk
42 Dark 3day ivd -0.59 >More info -0.45 >More info 0h ivd Original data
43 csn5 (csn5a-2 csn5b) dark 0.70 >More info 0.33 >More info WT dark Original data GEO bulk
44 WT Seedling BL 0.55 >More info 0.48 >More info WT Seedling Dark Original data GEO bulk
45 aerial organ callus inducing medium 48 h -0.56 >More info -0.47 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
46 piffq FR 3h 0.57 >More info 0.45 >More info WT FR 3h whole seedling Original data GEO bulk
47 bak1-3 +Pep2 10h -0.56 >More info -0.46 >More info WT +Pep2 10h Pep2 Original data GEO bulk
48 col-5 hrpA 12h -0.47 >More info -0.55 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
49 Day Time Treatment 0.45 >More info 0.57 >More info Day Time Control 1hr white light pulse aerial rosette Original data
50 csn4-1 mutant 0.68 >More info 0.33 >More info WT dark Original data GEO bulk
51 col-5 DC3000 12h -0.49 >More info -0.52 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
52 aox1a:rpoTmp MLD stressed 0.60 >More info 0.40 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
53 WT Rc50 0.58 >More info 0.42 >More info WT Dark red light whole seedling Original data GEO bulk
54 GST 4 h (leaf) -0.49 >More info -0.51 >More info Mock 4 h (leaf) Original data Elicitor treatments
55 Laer treat paclobutrazol (PAC) -0.49 >More info -0.51 >More info Laer Control leaf discs Original data GEO bulk
56 Nicotinamide-73hr -0.46 >More info -0.54 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
57 eto1-4 + AVG -0.41 >More info -0.59 >More info eto1-4 whole seedling Original data GEO bulk
58 seedling 1.5h after HZE WT -0.46 >More info -0.54 >More info seedling day 1 unirradiated WT 1.5h Original data
59 Seedling KUA1-IOX est -0.32 >More info -0.67 >More info Seedling KUA1-IOX mock Original data
60 det2 light-dark -0.59 >More info -0.39 >More info det2 light light-dark Original data GEO bulk
61 Dark 6h wt -0.62 >More info -0.36 >More info 0h wt Original data
62 Shoot apex inflorescence (after bolting) 0.33 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
63 Nicotinamide-65hr -0.47 >More info -0.51 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
64 Nicotinamide-53hr -0.43 >More info -0.55 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
65 csn3-1 dark 0.63 >More info 0.34 >More info WT dark Original data GEO bulk
66 Nicotinamide-93hr -0.45 >More info -0.51 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
67 seed germinating in countinuous light 24h SL 0.29 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
68 high-R:FR bud axillary 0.39 >More info 0.57 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
69 17 0h total 0.56 >More info 0.39 >More info 27 0h total whole seedlings floating on MS medium Original data
70 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.52 >More info 0.43 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
71 Dark 6h hml -0.62 >More info -0.32 >More info 0h hml Original data
72 ptpks2 0.21 >More info 0.73 >More info Col-WT leaves Original data GEO bulk
73 Osmotic Stress 24 h (shoot) -0.38 >More info -0.55 >More info Stress mock 24 h (shoot) Original data Stress treatments
74 E.coli 0157 H7 7h -0.40 >More info -0.53 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
75 etiolated cop1BBX22-GFPox 0.50 >More info 0.43 >More info etiolated Col-0 whole seedlings Original data GEO bulk
76 ABA 1 h -0.34 >More info -0.59 >More info Mock 1 h Original data Basic hormone treatment of seedlings
77 8h-DC3000 avrRpm1 -0.42 >More info -0.51 >More info 8h-DC3000 leaves Original data GEO bulk
78 axr2-BR 0.53 >More info 0.39 >More info BR BR dark-grown seedlings Original data GEO bulk
79 4h decapitation 0.27 >More info 0.65 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
80 WT in -N -0.61 >More info -0.31 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
81 nas4x leaves - Fe 0.36 >More info 0.55 >More info WT leaves - Fe Leaves Original data GEO bulk
82 axr2 0.40 >More info 0.51 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
83 0.2µM SMX 0.34 >More info 0.56 >More info control Whole seedling Original data GEO bulk
84 gun4-1 -0.35 >More info -0.54 >More info WT Col-0 seedling Original data GEO bulk
85 tor mutant glucose -0.39 >More info -0.50 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
86 spch -0.33 >More info -0.55 >More info Col-0 WT whole seedling Original data GEO bulk
87 rosette leaves fdh -0.38 >More info -0.50 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
88 24h light (+Lincomycin) -0.31 >More info -0.55 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
89 1 h Light Total RNA 0.31 >More info 0.55 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
90 Nicotinamide-57hr -0.36 >More info -0.50 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
91 SCR-GR Time 1H Dex -0.31 >More info -0.53 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
92 Col ozone 3h -0.34 >More info -0.50 >More info Col clean-air 3h ozone Original data GEO bulk
93 tfl1-1-16ºC -0.31 >More info -0.52 >More info WT-16ºC Original data GEO bulk
94 T6 leaf-drought -0.30 >More info -0.52 >More info T6 leaf-well watered Original data GEO bulk
95 ABA control -0.32 >More info -0.50 >More info No ABA control Original data GEO bulk
96 sex1-3 -0.19 >More info -0.62 >More info Col-WT leaves Original data GEO bulk
97 Col-0 +lincomycin -0.30 >More info -0.51 >More info Col-0 -lincomycin Original data GEO bulk
98 SLWF infested -0.51 >More info -0.29 >More info SLWF uninfested rosette tissue Original data GEO bulk
99 Root dark control 24h -0.30 >More info -0.50 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
100 2hr continuous KNO3 ECR cell -0.29 >More info -0.51 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
101 cov1 cov2 stem Top 0.51 >More info 0.28 >More info WT stem Top stem Top Original data GEO bulk
102 Root submergence 24h -0.26 >More info -0.53 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
103 seedling h S Exp 0.51 >More info 0.25 >More info seedling -S Exp seedling Original data
104 eto1-4 -0.55 >More info -0.20 >More info Col-0 whole seedling Original data GEO bulk
105 oas-a1.1 root 0.24 >More info 0.50 >More info WT-Untreated Root Original data GEO bulk
106 Whole root - low pH 30min 0.21 >More info 0.50 >More info Whole root - Std pH 30min pH 4.6 for 30 min Original data GEO bulk
107 Blue Light 4 h 0.14 >More info 0.54 >More info White Light 4 h Original data Light treatments
108 xyl-grown cell culture- 1h 1mM Suc -0.02 >More info 0.70 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
109 root endodermis and quiescent center 40 mM NaCl -0.14 >More info -0.53 >More info root endodermis and quiescent center Original data GEO bulk
110 short 17-degree- -0.05 >More info 0.72 >More info control short Original data GEO bulk
111 Shoot submergence 7h -0.66 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
112 Pseudomonas -0.12 >More info -0.52 >More info Control pseudomonas treated whole seedling Original data GEO bulk
113 gpa1-4/agb1-2 clean-air 3h -0.13 >More info -0.51 >More info Col clean-air 3h clean-air Original data GEO bulk
114 Dark 2day ivd -0.62 >More info -0.01 >More info 0h ivd Original data
115 Heat shock optimum -0.02 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
116 35S::Zat12 -0.06 >More info -0.56 >More info WT Original data GEO bulk
117 IAA7mII over-expressor IAA Treated -0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
118 tetraploid -0.03 >More info -0.58 >More info diploid Original data GEO bulk
119 toc1-1-53hr -0.04 >More info -0.56 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
120 1 h Light IP RNA 0.07 >More info 0.53 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
121 root longitudinal zone-4 NaCl -0.09 >More info -0.51 >More info root longitudinal zone-4 Original data GEO bulk
122 triploid female excess 0.01 >More info 0.57 >More info tetraploid Original data GEO bulk
123 etiolated cop1 0.53 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
124 ACC 3 h -0.07 >More info -0.50 >More info Mock 3 h Original data Basic hormone treatment of seedlings
125 Col-0 0h NAA -0.07 >More info -0.50 >More info Col-0 6h MOCK Original data GEO bulk
126 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
127 seedling 3h after HZE WT -0.54 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
128 Col BTH -0.19 >More info 0.67 >More info Col rosettes Original data GEO bulk
129 35S:ATR1 like miR 0.03 >More info -0.51 >More info WT for miR Original data GEO bulk
130 myb3 myb3r4d 0.05 >More info -0.52 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
131 siliques AtHb1 control -0.07 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
132 light 0.62 >More info -0.18 >More info dark light seedling Original data GEO bulk
133 3x(m) 0.12 >More info -0.54 >More info 2x two week old seedlings Original data
134 Laer pretreat GA Flg22 1h -0.35 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
135 Leafminer damaged seedlings -0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
136 Col0-PsmES4326-24hpi -0.49 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk