4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 1.5 hr ammonium
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List of experiments correlated with "1.5 hr ammonium"  Help Download transcriptome of top 30
Score Experiment Correlation from
1.5 hr ammonium		 Correlation to
1.5 hr ammonium		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 1.5 hr ammonium 1.00 >More info 1.00 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
2 8 hr ammonium 0.86 >More info 0.79 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
3 1.5 hr nitrate 0.81 >More info 0.78 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
4 8 hr nitrate 0.75 >More info 0.70 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
5 root hypoxia total 0.59 >More info 0.71 >More info root control total Original data GEO bulk
6 root - 01% oxygen - 2h 0.48 >More info 0.82 >More info root - 21% oxygen - 2h Original data GEO bulk
7 Col-0 2HS 0.51 >More info 0.74 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
8 roottip hypoxia total 0.56 >More info 0.68 >More info roottip control total Original data GEO bulk
9 WT Root Hypoxia 0.49 >More info 0.75 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
10 Split KNO3 roots - 2hours 0.55 >More info 0.66 >More info Split KCl roots - 2hours 5mM KNO3 on ONE side for 2 hours roots Original data GEO bulk
11 Ws 2h KNO3 0.51 >More info 0.70 >More info Ws 2h KCl 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
12 WT Shoot Hypoxia 0.41 >More info 0.75 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
13 8hr-pH4.5 0.55 >More info 0.60 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
14 oligomycin 1 h 0.56 >More info 0.59 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
15 15m.KNO3 0.46 >More info 0.69 >More info To. KNO3 14 day old Roots Original data GEO bulk
16 oas-a1.1 root -0.45 >More info -0.69 >More info WT-Untreated Root Original data GEO bulk
17 MPK6 ox Shoot Hypoxia 0.41 >More info 0.73 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
18 WT Nitrate 0.5h 0.62 >More info 0.51 >More info WT untreated Original data GEO bulk
19 shoot-10 μM DEX- 6 hr 0.53 >More info 0.59 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
20 6h +Pi -0.52 >More info -0.60 >More info 6h -Pi root Original data GEO bulk
21 oas-a1.1 Cd 18h 0.59 >More info 0.51 >More info Cd 18h root Root Original data GEO bulk
22 2 hr Hypoxia Total RNA 0.50 >More info 0.60 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
23 P.p 6hai 0.53 >More info 0.55 >More info At-Control roots Original data GEO bulk
24 1 h Light Total RNA -0.51 >More info -0.57 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
25 2hr continuous KNO3 EPR cell 0.39 >More info 0.69 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
26 Col-0 wt Hypoxic 0.39 >More info 0.68 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
27 root - 04% oxygen - 2h 0.26 >More info 0.79 >More info root - 21% oxygen - 2h Original data GEO bulk
28 MPK6 ox Root Hypoxia 0.44 >More info 0.60 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
29 2 hr Hypoxia IP RNA 0.46 >More info 0.58 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
30 ckh1 CK200 0.48 >More info 0.55 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
31 cngc4 0.46 >More info 0.57 >More info Ws-2 Seedlings Original data GEO bulk
32 Leafminer damaged seedlings 0.47 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
33 3x(p) 0.33 >More info 0.70 >More info 2x two week old seedlings Original data
34 Col-0 low oxygen 0.55 >More info 0.47 >More info Col-0 control low oxygen root Original data GEO bulk
35 WT (Col) glucose -0.53 >More info -0.49 >More info WT (Col) glucose seedlings Original data GEO bulk
36 shoot hypoxia total 0.32 >More info 0.70 >More info shoot control total Original data GEO bulk
37 Aerobic e1 ate2 0.28 >More info 0.73 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
38 whole roots 140 mM NaCl 30 minutes 0.41 >More info 0.60 >More info whole roots standard Original data GEO bulk
39 Nicotinamide-93hr 0.55 >More info 0.45 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
40 Nicotinamide-69hr 0.53 >More info 0.47 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
41 leaf blade in D 0.48 >More info 0.52 >More info leaf blade in WL leaf blades Original data GEO bulk
42 low CO2 + light 0.47 >More info 0.53 >More info normal CO2 + light Original data GEO bulk
43 1 h Light IP RNA -0.53 >More info -0.46 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
44 pepr1-1 Pepr2-3 +Pep2 2h -0.54 >More info -0.45 >More info WT +Pep2 2h Pep2 Original data GEO bulk
45 AgNO3 3 h 0.43 >More info 0.56 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
46 flu dark 8hours/30 minute light 0.45 >More info 0.54 >More info col dark 8hours/30 minute light Original data GEO bulk
47 root - 01% oxygen - 30min 0.29 >More info 0.70 >More info root - 21% oxygen - 30min Original data GEO bulk
48 Col0-PsmES4326-24hpi 0.38 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
49 Whole root - low pH 1H 0.35 >More info 0.64 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
50 Col 0 2h KNO3 0.36 >More info 0.63 >More info Col 0 2h KCl 5 mM KNO3 root Original data GEO bulk
51 2hr continuous KNO3 and MSX PeR cell 0.40 >More info 0.59 >More info 2hr continuous KCl and MSX control PeR cell Pericycle root cells Original data GEO bulk
52 20m.KNO3 0.40 >More info 0.58 >More info To. KNO3 14 day old Roots Original data GEO bulk
53 Control KNO3 roots - 2hours 0.42 >More info 0.56 >More info Control KCl roots - 2hours 5mM KNO3 on both sides for 2 hours roots Original data GEO bulk
54 Aerobic prt6 0.37 >More info 0.61 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
55 2hr continuous KNO3 PrR cell 0.40 >More info 0.58 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
56 root - 08% oxygen - 2h 0.17 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
57 P.p 10.5hai 0.51 >More info 0.46 >More info At-Control roots Original data GEO bulk
58 Whole root - low pH 30min 0.42 >More info 0.55 >More info Whole root - Std pH 30min pH 4.6 for 30 min Original data GEO bulk
59 4C 1h 0.40 >More info 0.57 >More info 4C 0h Original data GEO bulk
60 WT 2-4h Xanthomonas 0.38 >More info 0.59 >More info WT T0 Original data GEO bulk
61 vte1-1 3d vernalization -0.55 >More info -0.41 >More info WT 3d vernalization Original data GEO bulk
62 wavy 0.50 >More info 0.46 >More info WT Original data GEO bulk
63 rosette Light Wounded 0.50 >More info 0.46 >More info rosette Light Control Original data GEO bulk
64 IAA 0.5h 0.46 >More info 0.50 >More info control 0.5h root Original data GEO bulk
65 flu 0.40 >More info 0.55 >More info WT Col Original data GEO bulk
66 IAA 2h 0.40 >More info 0.55 >More info control 2h root Original data GEO bulk
67 hni9 low nitrogen -0.53 >More info -0.41 >More info WT low nitrogen roots Original data GEO bulk
68 TNT-seedlings 0.35 >More info 0.59 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
69 1h +Pi -0.38 >More info -0.55 >More info 1h -Pi root Original data GEO bulk
70 Heat shock optimum 0.28 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
71 root - 04% oxygen - 30min 0.18 >More info 0.75 >More info root - 21% oxygen - 30min Original data GEO bulk
72 Col BTH 0.25 >More info 0.67 >More info Col rosettes Original data GEO bulk
73 columella auxin 0.38 >More info 0.54 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
74 Nicotinamide-65hr 0.50 >More info 0.42 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
75 WT 3H Cold 0.31 >More info 0.61 >More info WT control Original data GEO bulk
76 RGA-GR-DEX 0.40 >More info 0.51 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
77 hrpA fliC 7h 0.38 >More info 0.53 >More info Mock 7h hrpA fliC Original data GEO bulk
78 P.syringae AvrRpt2 4 h (leaf) 0.31 >More info 0.60 >More info Mock 4 h (leaf) Original data Elicitor treatments
79 pip3 At2g19270 TDNA 9 0.41 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
80 12m.KNO3 0.30 >More info 0.61 >More info To. KNO3 14 day old Roots Original data GEO bulk
81 myb61 xylem 0.33 >More info 0.58 >More info wt xylem xylem Original data GEO bulk
82 pericycle auxin 0.33 >More info 0.56 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
83 npr1-3 MOCK 48h -0.26 >More info -0.63 >More info Col-0 MOCK 48h Original data GEO bulk
84 Laer pretreat GA Flg22 1h 0.16 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
85 TA induced 0.35 >More info 0.52 >More info Methanol TA Suspension cells Original data GEO bulk
86 3x(m) 0.26 >More info 0.61 >More info 2x two week old seedlings Original data
87 siliques AtHb1 control 0.34 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
88 250uM K-nitrate 20min roots 0.28 >More info 0.58 >More info 250uM KCl 20min roots Roots Original data GEO bulk
89 OsSAP11 expressing -0.36 >More info -0.50 >More info WT seedlings Original data GEO bulk
90 Ambient CO2 LIMITING N NIGHT -0.34 >More info -0.51 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
91 Light 0.25 >More info 0.60 >More info Control Original data GEO bulk
92 triploid female excess -0.34 >More info -0.50 >More info tetraploid Original data GEO bulk
93 FarRed Light 45min 0.21 >More info 0.63 >More info White Light 45min Original data Light treatments
94 2hr transitory KNO3 PrR cell 0.24 >More info 0.60 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
95 Kas-1 -Fe 48h -0.50 >More info -0.33 >More info Kas-1 +Fe 24h roots Original data GEO bulk
96 Kas -Fe 48h Roots -0.50 >More info -0.33 >More info Kas +Fe 24h Roots Original data GEO bulk
97 root - 04% oxygen - 48h 0.09 >More info 0.74 >More info root - 21% oxygen - 48h Original data GEO bulk
98 til1-1 22C 0.28 >More info 0.54 >More info Col-0 22C Original data GEO bulk
99 CeO2 germinant -0.26 >More info -0.55 >More info Millipore Water germinant CeO2 seedling Original data
100 myb3 myb3r4d 0.28 >More info 0.52 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
101 Protoplast Induced 0.26 >More info 0.53 >More info Uninduced Original data GEO bulk
102 6h volatiles Sm. R3089 0.20 >More info 0.59 >More info 6h untreated whole seedling Original data GEO bulk
103 IAA 3 h 0.22 >More info 0.56 >More info Mock 3 h Original data Basic hormone treatment of seedlings
104 seedlings-week-old RECA1-overexpressing
transgenic		 0.28 >More info 0.50 >More info seedlings-week-old Col-0 seedlings Original data
105 FAMA induced 4h -0.27 >More info -0.50 >More info control 4h Whole seedling Original data GEO bulk
106 Col ozone 3h 0.19 >More info 0.58 >More info Col clean-air 3h ozone Original data GEO bulk
107 sfr6 drought -0.26 >More info -0.50 >More info WT drought All aerial tissue Original data GEO bulk
108 Infected pft1 leaf 0.23 >More info 0.52 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
109 opr3 OPDA 2 h 0.24 >More info 0.51 >More info opr3 0 h Original data GEO bulk
110 Whole root - low pH 3H 0.11 >More info 0.62 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
111 root - 08% oxygen - 30min 0.01 >More info 0.71 >More info root - 21% oxygen - 30min Original data GEO bulk
112 Rose Bengal 0.5 uM 0.18 >More info 0.54 >More info Control RB and PER Rose Bengal Original data
113 2hr transitory KNO3 ECR cell 0.21 >More info 0.50 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
114 Hydrogen Peroxide 500 uM 0.20 >More info 0.51 >More info Control RB and PER Hydrogen Peroxide Original data
115 bHLH122 ox -0.17 >More info -0.53 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
116 Shoot apex inflorescence (after bolting) 0.04 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
117 Light 3day wt -0.17 >More info -0.52 >More info 0h wt Original data
118 root - 01% oxygen - 48h 0.14 >More info 0.53 >More info root - 21% oxygen - 48h Original data GEO bulk
119 seed germinating in countinuous light 24h SL 0.00 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
120 bri1-116 -0.07 >More info 0.73 >More info Col seedling Original data GEO bulk
121 SA 24h 0.09 >More info 0.57 >More info EtOH 24h 24hr Original data GEO bulk
122 IAA7mII over-expressor IAA Treated -0.04 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
123 Red/FR Light45min -0.10 >More info -0.53 >More info FarRed Light 45min Original data Light treatments
124 vtc1-1 -0.08 >More info -0.55 >More info Col-0 whole plant Original data GEO bulk
125 SCR-GR Time 1H Dex 0.07 >More info 0.54 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
126 root longitudinal zone-3 -Fe -0.08 >More info -0.53 >More info root longitudinal zone-3 standard Original data GEO bulk
127 35S:PCO1 hypoxia -0.10 >More info -0.51 >More info WT hypoxia whole rosette Original data
128 2hr transitory KNO3 EPR cell 0.08 >More info 0.51 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
129 35SAvr -0.12 >More info 0.67 >More info Ecotype Col Original data GEO bulk
130 Leaf wounded 0.03 >More info 0.52 >More info Leaf control vegetative leaf Original data GEO bulk
131 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
132 siliques WT hypoxia 0.51 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
133 non-polysome mRNA eif3k -0.02 >More info -0.50 >More info non-polysome mRNA WT aerial part Original data GEO bulk
134 root - 08% oxygen - 48h -0.08 >More info 0.59 >More info root - 21% oxygen - 48h Original data GEO bulk
135 WT roots - Fe 0.60 >More info -0.12 >More info WT roots + Fe Roots Original data GEO bulk
136 seedling -S Exp -0.17 >More info 0.57 >More info seedling FN Exp seedling Original data