4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on atmyc2 cop1 Seedling Dark
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List of experiments correlated with "atmyc2 cop1 Seedling Dark"  Help Download transcriptome of top 30
Score Experiment Correlation from
atmyc2 cop1 Seedling Dark		 Correlation to
atmyc2 cop1 Seedling Dark		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 atmyc2 cop1 Seedling Dark 1.00 >More info 1.00 >More info WT Seedling Dark Original data GEO bulk
2 cop1 Seedling Dark 0.87 >More info 0.91 >More info WT Seedling Dark Original data GEO bulk
3 WT Seedling BL 0.86 >More info 0.84 >More info WT Seedling Dark Original data GEO bulk
4 phr1 Shoot-Pi 0.75 >More info 0.72 >More info WT Root-Pi shoots Original data GEO bulk
5 CabpBVR2 -0.73 >More info -0.70 >More info WT Original data GEO bulk
6 Col-0 Root 100 mM ATP 30 min 0.70 >More info 0.68 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
7 phr1 phl1 Root-Pi -0.71 >More info -0.67 >More info WT Shoot+Pi roots Original data GEO bulk
8 WT light 0.71 >More info 0.64 >More info WT dark Original data GEO bulk
9 bri1-116 0.60 >More info 0.73 >More info Col seedling Original data GEO bulk
10 etiolated cop1BBX22-GFPox 0.67 >More info 0.64 >More info etiolated Col-0 whole seedlings Original data GEO bulk
11 csn5 (csn5a-2 csn5b) dark 0.69 >More info 0.61 >More info WT dark Original data GEO bulk
12 35SpBVR3 -0.66 >More info -0.63 >More info WT Original data GEO bulk
13 toc1-1-85hr 0.51 >More info 0.76 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
14 csn4-1 mutant 0.68 >More info 0.56 >More info WT dark Original data GEO bulk
15 phyB Dark 0.63 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
16 phyAphyB Dark -0.62 >More info -0.58 >More info phyB Dark Original data GEO bulk
17 CeO2 germinant -0.47 >More info -0.73 >More info Millipore Water germinant CeO2 seedling Original data
18 WT Rc50 0.57 >More info 0.61 >More info WT Dark red light whole seedling Original data GEO bulk
19 Col-0 low oxygen -0.61 >More info -0.54 >More info Col-0 Original data GEO bulk
20 csn3-1 dark 0.63 >More info 0.52 >More info WT dark Original data GEO bulk
21 WT-16ºC -0.49 >More info -0.66 >More info WT-23ºC Original data GEO bulk
22 aerial organ callus inducing medium 96 h -0.53 >More info -0.61 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
23 toc1-1-81hr 0.46 >More info 0.68 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
24 toc1-1-73hr 0.39 >More info 0.75 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
25 afb3-1 2h KNO3 0.39 >More info 0.75 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
26 WT Red light 18h 0.50 >More info 0.62 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
27 SCL3 OE -0.68 >More info -0.44 >More info Col-0 whole root Original data GEO bulk
28 WT(Ler) Rc50 0.52 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
29 Mutant ga1-5 -0.51 >More info -0.59 >More info Ler-1 Original data Comparison of plant hormone related mutant
30 ckh2 CK0 0.48 >More info 0.61 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
31 WT(Ler) Rc15 0.49 >More info 0.59 >More info WT(Ler) Dark Original data GEO bulk
32 dorn1-1 Root MES buffer 30 min 0.47 >More info 0.61 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
33 erf104-ko H2O 4h 0.56 >More info 0.51 >More info Col-0 H2O 4h Original data GEO bulk
34 toc1-1-57hr 0.45 >More info 0.62 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
35 WT 30μM arsenate 8 hours. 0.48 >More info 0.58 >More info WT control (not supplemented). Original data
36 eto1-4 + AVG -0.53 >More info -0.52 >More info eto1-4 whole seedling Original data GEO bulk
37 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.51 >More info 0.53 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
38 toc1-1-53hr 0.34 >More info 0.70 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
39 DC3000 7h -0.49 >More info -0.55 >More info Mock 7h DC3000 Original data GEO bulk
40 low water potential -0.54 >More info -0.49 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
41 Shoot apex inflorescence (after bolting) 0.38 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
42 T6 leaf-drought -0.45 >More info -0.58 >More info T6 leaf-well watered Original data GEO bulk
43 Col-0 V. longisporum-inoculated 48 hpi 0.33 >More info 0.70 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
44 TAMM27 roots 2hr KCl control 0.50 >More info 0.52 >More info Col0 roots 2hr KCl control root Original data GEO bulk
45 T101D 10mM NH4NO3 -0.50 >More info -0.52 >More info col 10mM NH4NO3 Root Original data
46 AtLysM RLK1 mutant water 0.53 >More info 0.48 >More info WT water Original data GEO bulk
47 Light 4h polysome-bound 0.50 >More info 0.51 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
48 10mM sucrose -0.51 >More info -0.50 >More info control Whole seedling Original data GEO bulk
49 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.47 >More info 0.54 >More info 2d dark-grown WT seedling Original data GEO bulk
50 35S:VND7-VP16-GR+CHX -0.42 >More info -0.59 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
51 35S::ERF104 H2O 4h 0.57 >More info 0.42 >More info Col-0 H2O 4h Original data GEO bulk
52 Dark 4 h pls RedLight 1min 0.30 >More info 0.69 >More info Dark 4 h Original data Light treatments
53 35:SUB1C -0.54 >More info -0.44 >More info WT whole seedling Original data GEO bulk
54 ahg2-1sid2-2 0.44 >More info 0.54 >More info WT (Col) control Original data GEO bulk
55 Mutant arf2-6 (IAA) 0.46 >More info 0.51 >More info Col (IAA) Original data GEO bulk
56 AFB1 0h 0.41 >More info 0.56 >More info Col 0h Leaf Original data GEO bulk
57 eif3h polysome -0.43 >More info -0.52 >More info WT polysome Original data GEO bulk
58 Pst-DC3000(hrpA)-4hpi -0.38 >More info -0.57 >More info Pst-DC3000-4hpi Original data GEO bulk
59 Col leaf scrape 5 dpi -0.55 >More info -0.38 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
60 seed germinating in countinuous light 24h SL 0.26 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
61 Ambient CO2 expanding leaf 0.52 >More info 0.41 >More info Control for tissue data expanding leaf Original data
62 Col upon hypoxia 6 hrs 0.41 >More info 0.52 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
63 6h volatiles Sp. HRO-C48 -0.30 >More info -0.63 >More info 6h untreated whole seedling Original data GEO bulk
64 2hr continuous KNO3 ECR cell -0.29 >More info -0.63 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
65 seedlings + TSA 0.51 >More info 0.40 >More info control seedlings 10-day old whole seedling Original data GEO bulk
66 nNOS-control -0.34 >More info -0.56 >More info WT-control leaf Original data
67 Dark 4 h pls UV-A 5 min 0.26 >More info 0.64 >More info Dark 4 h Original data Light treatments
68 ckh2 CK25 0.35 >More info 0.55 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
69 bak1-3 +Pep2 2h 0.37 >More info 0.53 >More info WT +Pep2 2h Pep2 Original data GEO bulk
70 eif3h non-polysome -0.38 >More info -0.52 >More info WT non-polysome Original data GEO bulk
71 3x(m) 0.37 >More info 0.53 >More info 2x two week old seedlings Original data
72 toc1-1-65hr 0.32 >More info 0.58 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
73 mpk6-ko H2O 4h 0.55 >More info 0.34 >More info Col-0 H2O 4h Original data GEO bulk
74 Ambient CO2 leaf primordia 0.51 >More info 0.38 >More info Control for tissue data leaf primordia Original data
75 seedling -S Exp -0.61 >More info -0.28 >More info seedling FN Exp seedling Original data
76 Ambient CO2 fully expanded leaf 0.51 >More info 0.38 >More info Control for tissue data fully expanded leaf Original data
77 SA 0.25 >More info 0.64 >More info WT mock Whole seedling Original data GEO bulk
78 Rosette leaf No12 0.51 >More info 0.36 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
79 P.p 2.5hai 0.36 >More info 0.51 >More info At-Control roots Original data GEO bulk
80 R. solani AG8 0.26 >More info 0.60 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
81 rosettes myoox drought -0.52 >More info -0.33 >More info rosettes myoox watered Original data GEO bulk
82 abh1 -ABA -0.19 >More info -0.66 >More info Col-0 -ABA Original data GEO bulk
83 24h volatiles Sp. HRO-C48 0.30 >More info 0.53 >More info 24h untreated whole seedling Original data GEO bulk
84 oligomycin 1 h 0.33 >More info 0.50 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
85 pif3 Dark 0h 0.31 >More info 0.51 >More info WT Dark 0h etiolated seedling Original data GEO bulk
86 2hr transitory KNO3 ECR cell -0.30 >More info -0.52 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
87 upb1-1 elongation zone -0.29 >More info -0.52 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
88 ubp1c-1/35S:FLAG-UBP1C IP-RNA 2hLight -0.28 >More info -0.53 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA 2hLight 2 h light seedling Original data
89 IAA/inhibitor B Treated 0.24 >More info 0.55 >More info IAA Treated Original data GEO bulk
90 R. solani AG2-1 0.19 >More info 0.59 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
91 cngc19 -0.52 >More info -0.25 >More info Col-0 root Original data GEO bulk
92 plant (tga2-5-6) 4h phytoprostane A1 0.24 >More info 0.53 >More info plant (tga2-5-6) 4h control Original data GEO bulk
93 Heat shock optimum 0.10 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
94 root longitudinal zone-1 -Fe -0.24 >More info -0.50 >More info root longitudinal zone-1 standard Original data GEO bulk
95 35S:VND7-VP16-GR+DEX +CHX -0.16 >More info -0.58 >More info 35S:VND7-VP16-GR+CHX 10mM cycloheximide (CHX) 2hrs followed by 10mM dexamethazone (DEX) 4hrs whole seedlings Original data GEO bulk
96 root longitudinal zone-4 pH 4.6 0.23 >More info 0.51 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
97 AgNO3 3 h 0.16 >More info 0.57 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
98 etiolated cop1 0.68 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
99 root - 04% oxygen - 48h 0.53 >More info 0.19 >More info root - 21% oxygen - 48h Original data GEO bulk
100 Mutant axr3-1 (IAA) 0.20 >More info 0.50 >More info Col (IAA) Original data GEO bulk
101 Red Light 4 h -0.18 >More info -0.51 >More info White Light 4 h Original data Light treatments
102 5-Triiodobenzoic acid3 h 0.14 >More info 0.54 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
103 Total RNA 35S:HF-RPL18 0.02 >More info 0.66 >More info Total RNA csp1 12h non-stress rosettes Original data GEO bulk
104 35S:MYB28 like miR 0.14 >More info 0.54 >More info WT for miR Original data GEO bulk
105 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
106 sfr6 cold 0.18 >More info 0.50 >More info WT cold All aerial tissue Original data GEO bulk
107 npr1 -0.10 >More info -0.56 >More info WT(COL) Original data GEO bulk
108 bZIP1ko mutant N-Light+ 0.51 >More info 0.14 >More info WT-sib N-Light+ whole plant Original data GEO bulk
109 MPK6 ox Root Hypoxia 0.50 >More info 0.15 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
110 aln-1 -0.53 >More info -0.11 >More info Col-0 Aerial part of seedlings Original data
111 shoot control p35S -0.09 >More info -0.53 >More info shoot control total Original data GEO bulk
112 35S:ATR1 like miR 0.08 >More info 0.52 >More info WT for miR Original data GEO bulk
113 Col BTH -0.10 >More info 0.67 >More info Col rosettes Original data GEO bulk
114 siliques AtHb1 control 0.03 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
115 sfr3 cold -0.56 >More info 0.02 >More info WT-cold aerial tissues Original data GEO bulk
116 35S:ORE1-protoplast 6h -0.04 >More info -0.50 >More info WT none mesophyll cell protoplasts Original data GEO bulk
117 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
118 cpctry -0.14 >More info 0.64 >More info Col Original data GEO bulk
119 xyl-grown cell culture- 1h 1mM Suc 0.07 >More info -0.53 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
120 light 0.62 >More info -0.18 >More info dark light seedling Original data GEO bulk
121 TNT-seedlings -0.17 >More info 0.61 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
122 Laer pretreat GA Flg22 1h -0.38 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
123 Leafminer damaged seedlings -0.25 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
124 Col0-PsmES4326-24hpi -0.38 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk