4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on protoplasted roots pH4.6
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List of experiments correlated with "protoplasted roots pH4.6"  Help Download transcriptome of top 30
Score Experiment Correlation from
protoplasted roots pH4.6		 Correlation to
protoplasted roots pH4.6		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 protoplasted roots pH4.6 1.00 >More info 1.00 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
2 root cells columella root cap -Fe 0.80 >More info 0.81 >More info whole roots standard Original data GEO bulk
3 root protoplasts 40 mM NaCl 0.77 >More info 0.83 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
4 root cells -Fe 0.81 >More info 0.79 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
5 root cells stele -Fe 0.79 >More info 0.80 >More info whole roots standard Original data GEO bulk
6 root cells endodermis and quiescent center -Fe 0.77 >More info 0.77 >More info whole roots standard Original data GEO bulk
7 root cells epidermis and lateral root cap -Fe 0.78 >More info 0.74 >More info whole roots standard Original data GEO bulk
8 2hr transitory KNO3 SR cell 0.68 >More info 0.81 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
9 2hr continuous KNO3 SR cell 0.67 >More info 0.75 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
10 2hr KCl control SR cell 0.65 >More info 0.72 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
11 root longitudinal zone-4 low sulfur 0.65 >More info 0.68 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
12 WT 30μM arsenate 8 hours. 0.66 >More info 0.63 >More info WT control (not supplemented). Original data
13 (Col-0)+200 uM As 0.60 >More info 0.63 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
14 FLIGHT TAGESB plate6 ROOTS 0.60 >More info 0.63 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
15 Selenate (root) 0.56 >More info 0.62 >More info Ws (root) Original data GEO bulk
16 Root Selenate 0.56 >More info 0.62 >More info Root control 40 micromolar selenate Root Original data GEO bulk
17 (Col-0)+100 uM As 0.54 >More info 0.61 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
18 toc1-1-85hr 0.50 >More info 0.63 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
19 WT-16ºC -0.52 >More info -0.57 >More info WT-23ºC Original data GEO bulk
20 IAA/inhibitor B Treated 0.48 >More info 0.61 >More info IAA Treated Original data GEO bulk
21 inhibitor B Treated 0.40 >More info 0.69 >More info Negative Control Original data GEO bulk
22 toc1-1-81hr 0.49 >More info 0.60 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
23 9m.KCl 0.47 >More info 0.62 >More info To. KCl 14 day old Roots Original data GEO bulk
24 Protoplast Induced 0.45 >More info 0.63 >More info Uninduced Original data GEO bulk
25 hni9 high nitrogen 0.56 >More info 0.51 >More info WT high nitrogen roots Original data GEO bulk
26 AgNO3 3 h 0.49 >More info 0.58 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
27 cngc1-3 -0.60 >More info -0.46 >More info Col-0 root Original data GEO bulk
28 Cycloheximide 3 h 0.58 >More info 0.48 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
29 TNT-seedlings 0.32 >More info 0.74 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
30 toc1-1-73hr 0.47 >More info 0.59 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
31 9 hr Hypoxia 1 hr recovery Total RNA 0.51 >More info 0.54 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
32 R. solani AG8 0.47 >More info 0.58 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
33 GA4 3 h (ga1 seed) 0.57 >More info 0.47 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
34 Col-0 low oxygen 0.49 >More info 0.55 >More info Col-0 control low oxygen root Original data GEO bulk
35 roottip hypoxia total 0.46 >More info 0.57 >More info roottip control total Original data GEO bulk
36 cngc19 -0.60 >More info -0.42 >More info Col-0 root Original data GEO bulk
37 ga1-3 SCL3OE -0.53 >More info -0.49 >More info ga1-3 whole root Original data
38 9 hr Hypoxia Total RNA 0.52 >More info 0.49 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
39 2hr transitory KNO3 PrR cell 0.64 >More info 0.37 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
40 toc1-1-53hr 0.40 >More info 0.61 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
41 0.125 mM gold 24 h 0.44 >More info 0.57 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
42 root Dosed gold 0.44 >More info 0.57 >More info root No gold .125 mM gold 24 h roots Original data
43 TAMM27 roots 2hr KNO3 nitrogen 0.51 >More info 0.48 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
44 Root dark control 24h 0.47 >More info 0.52 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
45 Col-0 wt Hypoxic 0.47 >More info 0.51 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
46 15m.KCl 0.37 >More info 0.61 >More info To. KCl 14 day old Roots Original data GEO bulk
47 seedling 6h after HZE WT 0.51 >More info 0.46 >More info seedling day 1 unirradiated WT 6h Original data
48 dicamba 0.50 >More info 0.47 >More info WT mock whole seedling Original data GEO bulk
49 Root submergence 24h 0.47 >More info 0.50 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
50 abi1 hypocotyl 0.39 >More info 0.58 >More info Ler hypocotyl hypocotyl Original data GEO bulk
51 arr-dmso-sample 0.56 >More info 0.40 >More info Wt-dmso-sample seedling Original data
52 inhibitor A Treated 0.46 >More info 0.50 >More info Negative Control Original data GEO bulk
53 ahg2-1sid2-2 0.33 >More info 0.63 >More info WT (Col) control Original data GEO bulk
54 OXUPB1-2 meristematic zone 0.32 >More info 0.64 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
55 WT tZ -0.34 >More info -0.62 >More info WT Original data GEO bulk
56 root cells epidermis 140mM NaCl 32 hours 0.38 >More info 0.57 >More info root cells epidermis standard 1 hour root cells epidermis Original data
57 bbx24 in Simulated Shade -0.33 >More info -0.62 >More info WT in simulated shade shade seedling Original data
58 root cells epidermis 140mM NaCl 48 hours 0.40 >More info 0.54 >More info root cells epidermis standard 1 hour root cells epidermis Original data
59 Nicotinamide-61hr 0.50 >More info 0.44 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
60 Root dark control 7h 0.44 >More info 0.50 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
61 3.5h KNO3 Whole root 0.44 >More info 0.50 >More info 3.5h KCl control Whole root Whole root Original data GEO bulk
62 Kas2 roots 2hr KCl control 0.41 >More info 0.53 >More info Col0 roots 2hr KCl control root Original data GEO bulk
63 Chemically 0.41 >More info 0.53 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
64 Whole root - low pH 12H 0.35 >More info 0.58 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
65 root cells epidermis 140mM NaCl 3 hours 0.36 >More info 0.57 >More info root cells epidermis standard 1 hour root cells epidermis Original data
66 root cells cortex -Fe 0.65 >More info 0.26 >More info whole roots standard Original data GEO bulk
67 expressing C2 Mock 0.28 >More info 0.63 >More info LUC2C Original data GEO bulk
68 root cells epidermis 140mM NaCl 8 hours 0.35 >More info 0.56 >More info root cells epidermis standard 1 hour root cells epidermis Original data
69 WT Seedling BL+ABA 0.51 >More info 0.39 >More info WT Seedling BL Original data GEO bulk
70 SA 0.36 >More info 0.54 >More info WT mock Whole seedling Original data GEO bulk
71 line J1551-5 days control + 2 days salt s 0.28 >More info 0.62 >More info line J1551-7 days-control Original data
72 5-Triiodobenzoic acid3 h 0.30 >More info 0.60 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
73 DUO1 induced 12h 0.34 >More info 0.55 >More info 12hr-not-induced whole plant Original data GEO bulk
74 bri1-116 0.16 >More info 0.73 >More info Col seedling Original data GEO bulk
75 seedling 1.5h after HZE WT 0.52 >More info 0.36 >More info seedling day 1 unirradiated WT 1.5h Original data
76 plant (tga2-5-6) 4h phytoprostane A1 0.36 >More info 0.51 >More info plant (tga2-5-6) 4h control Original data GEO bulk
77 Col0-PsmES4326-24hpi 0.25 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
78 DUO1 induced 24h 0.36 >More info 0.50 >More info 24hr-not-induced whole plant Original data GEO bulk
79 root epidermis and lateral root cap pH4.6 0.33 >More info 0.52 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
80 Whole root - low pH 6H 0.23 >More info 0.62 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
81 E2Fa-Dpa 0.54 >More info 0.30 >More info WT Original data GEO bulk
82 Mutant arf2-6 (IAA) 0.34 >More info 0.50 >More info Col (IAA) Original data GEO bulk
83 Whole root - low pH 3H 0.17 >More info 0.67 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
84 Heat shock optimum 0.18 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
85 Col-0 HS 0.29 >More info 0.54 >More info Col-0 control heat shocked seedling Original data GEO bulk
86 WT (Col-0) heat shock 0.29 >More info 0.54 >More info WT (Col-0) whole seedling Original data GEO bulk
87 columella auxin 0.28 >More info 0.55 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
88 Anoxia 0.25 >More info 0.57 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
89 Whole root - low pH 1H 0.28 >More info 0.53 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
90 Fe starvation 72 h 0.24 >More info 0.56 >More info Control Original data GEO bulk
91 whole roots -Fe 72 hour 0.24 >More info 0.56 >More info whole roots standard Original data GEO bulk
92 Cs root -0.29 >More info -0.51 >More info control root Original data GEO bulk
93 3x(m) 0.27 >More info 0.53 >More info 2x two week old seedlings Original data
94 Pst-DC3000(hrpA)-4hpi -0.27 >More info -0.52 >More info Pst-DC3000-4hpi Original data GEO bulk
95 Rose Bengal 0.5 uM 0.27 >More info 0.52 >More info Control RB and PER Rose Bengal Original data
96 Col-0 0h NAA 0.12 >More info 0.66 >More info Col-0 6h MOCK Original data GEO bulk
97 control leaf (cmt 5d) -0.25 >More info -0.53 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
98 cpctry 0.18 >More info 0.60 >More info Col Original data GEO bulk
99 35S::PI ap3-3 35S::AP-GR +DEX 0.23 >More info 0.54 >More info 0hr DEX Original data GEO bulk
100 whole roots -Fe 48 hour 0.20 >More info 0.56 >More info whole roots standard Original data GEO bulk
101 Laer pretreat GA Flg22 1h 0.05 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
102 Whole root - low pH 24H 0.25 >More info 0.51 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
103 ahg2-1 0.25 >More info 0.50 >More info WT (Col) control Original data GEO bulk
104 2hr continuous KNO3 PrR cell 0.60 >More info 0.14 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
105 Leafminer damaged seedlings 0.17 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
106 roottip control pSHR 0.19 >More info 0.54 >More info roottip control total control roottip Original data GEO bulk
107 Mutant axr3-1 (IAA) 0.15 >More info 0.55 >More info Col (IAA) Original data GEO bulk
108 root - 01% oxygen - 2h 0.14 >More info 0.56 >More info root - 21% oxygen - 2h Original data GEO bulk
109 siliques AtHb1 control 0.18 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
110 Col BTH 0.02 >More info 0.67 >More info Col rosettes Original data GEO bulk
111 seed germinating in countinuous light 24h SL 0.01 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
112 red illumination +lincomycin 0.14 >More info 0.54 >More info red illumination -lincomycin Original data GEO bulk
113 triploid female excess -0.16 >More info -0.52 >More info tetraploid Original data GEO bulk
114 epidermis auxin 0.18 >More info 0.50 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
115 seedling 3h after Gamma WT 0.14 >More info 0.53 >More info seedling day 1 unirradiated WT 3h Original data
116 Shoot apex inflorescence (after bolting) 0.01 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
117 -Sulfate 24 h 0.10 >More info 0.52 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
118 IAA7mII over-expressor IAA Treated -0.12 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
119 24h +Pi -0.06 >More info -0.50 >More info 24h -Pi root Original data GEO bulk
120 TaFLS overexpression line (OE1) -0.03 >More info 0.58 >More info Col-0 Rosette leaves Original data
121 seedling 3h after HZE WT 0.51 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
122 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
123 seedling -S Exp -0.16 >More info 0.52 >More info seedling FN Exp seedling Original data
124 4d red light grown hmr-22 seedlings 0.52 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data