4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Dark 1day hml
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List of experiments correlated with "Dark 1day hml"  Help Download transcriptome of top 30
Score Experiment Correlation from
Dark 1day hml		 Correlation to
Dark 1day hml		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Dark 1day hml 1.00 >More info 1.00 >More info 0h hml Original data
2 Dark 1day wt 0.93 >More info 0.93 >More info 0h wt Original data
3 Dark 1day ivd 0.92 >More info 0.92 >More info 0h ivd Original data
4 Dark 2day wt 0.91 >More info 0.91 >More info 0h wt Original data
5 Dark 2day hml 0.90 >More info 0.88 >More info 0h hml Original data
6 Dark 3day hml 0.89 >More info 0.87 >More info 0h hml Original data
7 Dark 3day wt 0.89 >More info 0.86 >More info 0h wt Original data
8 Dark 6h hml 0.87 >More info 0.87 >More info 0h hml Original data
9 Dark 6h wt 0.87 >More info 0.87 >More info 0h wt Original data
10 Dark 6h ivd 0.81 >More info 0.86 >More info 0h ivd Original data
11 Dark 3day ivd 0.81 >More info 0.74 >More info 0h ivd Original data
12 Shoot dark control 24h 0.66 >More info 0.84 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
13 Shoot dark control 7h 0.66 >More info 0.82 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
14 Shoot submergence 24h 0.63 >More info 0.79 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
15 seedling 1.5h after HZE atm-1 0.60 >More info 0.78 >More info seedling day 1 unirradiated atm-1 1.5h Original data
16 Pseudomonas 0.53 >More info 0.77 >More info Control pseudomonas treated whole seedling Original data GEO bulk
17 low CO2 + dark 0.53 >More info 0.76 >More info normal CO2 + light Original data GEO bulk
18 WT hypoxia 0.54 >More info 0.74 >More info WT normoxia whole rosette Original data
19 WT Red light 18h -0.53 >More info -0.70 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
20 seedling 1.5h after HZE WT 0.57 >More info 0.64 >More info seedling day 1 unirradiated WT 1.5h Original data
21 WT (Col) glucose -0.47 >More info -0.74 >More info WT (Col) glucose seedlings Original data GEO bulk
22 4d red light grown hmr-5 seedlings 0.54 >More info 0.66 >More info 4d red light grown WT(Col-0) seedlings Original data
23 Day Time Treatment -0.48 >More info -0.68 >More info Day Time Control 1hr white light pulse aerial rosette Original data
24 Col-0 DCA 48h -0.52 >More info -0.63 >More info Col-0 MOCK 48h Original data GEO bulk
25 T6 leaf-drought 0.45 >More info 0.70 >More info T6 leaf-well watered Original data GEO bulk
26 detached inflorescences 24h 0.50 >More info 0.64 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
27 24h light (+Lincomycin) 0.54 >More info 0.60 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
28 Light 4h steady-state -0.49 >More info -0.64 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
29 pif4pif5 mut 1h FR -0.46 >More info -0.66 >More info WT 1h FR Original data GEO bulk
30 sex1-3 0.35 >More info 0.77 >More info Col-WT leaves Original data GEO bulk
31 NahG 0.50 >More info 0.61 >More info Col-0 Leaves Original data GEO bulk
32 Light 4h polysome-bound -0.49 >More info -0.62 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
33 Dark 4 h pls RedLight 1min -0.41 >More info -0.68 >More info Dark 4 h Original data Light treatments
34 Col-0 C2H4 24h 0.50 >More info 0.59 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
35 Light 3day hml 0.23 >More info 0.85 >More info 0h hml Original data
36 det2 light-dark 0.46 >More info 0.62 >More info det2 light light-dark Original data GEO bulk
37 35SpBVR3 0.46 >More info 0.62 >More info WT Original data GEO bulk
38 WT (Col-0) inflorescence drought day 5 0.48 >More info 0.60 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
39 ptpks2 -0.33 >More info -0.73 >More info Col-WT leaves Original data GEO bulk
40 ABA JA 24h 0.29 >More info 0.77 >More info EtOH 24h 24hr Original data GEO bulk
41 camta1-2 0.42 >More info 0.64 >More info Col-0-WT Original data GEO bulk
42 mil4 sid2 0.45 >More info 0.61 >More info Col rosettes Original data GEO bulk
43 RGA-GR-DEX 0.38 >More info 0.67 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
44 gai Flg22 1h 0.43 >More info 0.62 >More info Laer Flg22 1h leaf discs Original data GEO bulk
45 seedling 24h after Gamma atm-1 -0.40 >More info -0.65 >More info seedling day 2 unirradiated atm-1 24h Original data
46 sid2 0.48 >More info 0.57 >More info Col rosettes Original data GEO bulk
47 T8 leaf-drought 0.44 >More info 0.60 >More info T8 leaf-well watered Original data GEO bulk
48 1 h Light Total RNA -0.48 >More info -0.56 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
49 gai Flg22 2h 0.47 >More info 0.56 >More info Laer Flg22 2h leaf discs Original data GEO bulk
50 aerial organ callus inducing medium 48 h 0.45 >More info 0.58 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
51 aerial organ callus inducing medium 12 h 0.48 >More info 0.55 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
52 sfr6 control -0.49 >More info -0.54 >More info WT control All aerial tissue Original data GEO bulk
53 WT mitomycin C -0.48 >More info -0.54 >More info WT mock shoot apical meristem Original data
54 Root dark control 24h 0.44 >More info 0.58 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
55 MIL4 ox 0.44 >More info 0.58 >More info Col Original data GEO bulk
56 Root submergence 7h 0.45 >More info 0.56 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
57 Root dark control 7h 0.44 >More info 0.57 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
58 OsRLCK253 expressing -0.48 >More info -0.53 >More info WT seedlings Original data GEO bulk
59 aerial organ callus inducing medium 96 h 0.41 >More info 0.60 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
60 high-R:FR bud axillary -0.37 >More info -0.63 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
61 CHLD reduction -0.51 >More info -0.48 >More info Col-0 dex green tissue Original data GEO bulk
62 elevated CO2 low Mg shoot -0.53 >More info -0.46 >More info atmospheric CO2 low Mg shoot Shoot Original data
63 Nicotinamide-93hr 0.49 >More info 0.50 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
64 Root submergence 24h 0.43 >More info 0.56 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
65 hai1-2 low water potential 0.43 >More info 0.56 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
66 6h volatiles Sm. R3089 0.27 >More info 0.72 >More info 6h untreated whole seedling Original data GEO bulk
67 WT (Col-0) inflorescence drought day 10 0.46 >More info 0.53 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
68 gun1gun5 drak pretreated 0.40 >More info 0.58 >More info WT drak pretreated Original data GEO bulk
69 Dark 4 h pls UV-AB 5min -0.43 >More info -0.54 >More info Dark 4 h Original data Light treatments
70 pXVE:HA-EDM2-a untreated 0.34 >More info 0.63 >More info Col-0 untreated seedlings Original data GEO bulk
71 Cd 18h root -0.34 >More info -0.63 >More info WT-Untreated Root Original data GEO bulk
72 max3GR24 (1 uM) -0.42 >More info -0.55 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
73 Dark 4 h pls UV-A 5 min -0.36 >More info -0.60 >More info Dark 4 h Original data Light treatments
74 At1g54160 ox -0.44 >More info -0.52 >More info Col-0 Original data GEO bulk
75 Col-0 overexpressing At1g54160 control -0.44 >More info -0.52 >More info WT no treatement Original data GEO bulk
76 oas-a1.1 root -0.34 >More info -0.62 >More info WT-Untreated Root Original data GEO bulk
77 aerial organ callus inducing medium 24h 0.46 >More info 0.50 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
78 seedling 24h after Gamma WT -0.36 >More info -0.60 >More info seedling day 2 unirradiated WT 24h Original data
79 Nicotinamide-69hr 0.45 >More info 0.50 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
80 CBF3 0mM NaCl 0.41 >More info 0.54 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
81 A6 mutant -0.41 >More info -0.54 >More info WT rosette leaves Rosette leaves Original data GEO bulk
82 TaFLS overexpression line (OE2) 0.38 >More info 0.56 >More info Col-0 Rosette leaves Original data
83 ced1 -0.41 >More info -0.53 >More info WT PEG 6hr seedlings Original data GEO bulk
84 Whole root - S 3H -0.31 >More info -0.63 >More info Whole root - S 0H Original data GEO bulk
85 pap1-D/tt4 0.43 >More info 0.51 >More info Col-0 aerial part Original data
86 CHLM overexpression -0.40 >More info -0.53 >More info Col-0 estr green tissue Original data GEO bulk
87 WT leaf-drought 0.42 >More info 0.51 >More info WT leaf-well watered Original data GEO bulk
88 Osmotic Stress 24 h (shoot) 0.39 >More info 0.53 >More info Stress mock 24 h (shoot) Original data Stress treatments
89 Uniconazole 12 h 0.30 >More info 0.62 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
90 lht1 untreated -0.32 >More info -0.60 >More info WT untreated untreated leaf Original data GEO bulk
91 PstDC3000 48h -0.30 >More info -0.62 >More info WT untreated 48hr leaf Original data GEO bulk
92 cca1-lhy 30m light 0.38 >More info 0.53 >More info 30m light whole seedlings Original data GEO bulk
93 cngc4 0.37 >More info 0.54 >More info Ws-2 Seedlings Original data GEO bulk
94 Col-0 +lincomycin 0.32 >More info 0.59 >More info Col-0 -lincomycin Original data GEO bulk
95 MYB12OX/tt4 0.41 >More info 0.50 >More info Col-0 aerial part Original data
96 Leafminer damaged seedlings 0.34 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
97 1 h Light IP RNA -0.38 >More info -0.52 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
98 CabpBVR2 0.36 >More info 0.54 >More info WT Original data GEO bulk
99 Paclobutrazol 12 h 0.30 >More info 0.60 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
100 Light 3day ivd -0.21 >More info -0.69 >More info 0h ivd Original data
101 4h decapitation -0.33 >More info -0.57 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
102 WT leaves - Fe -0.37 >More info -0.52 >More info WT leaves + Fe Leaves Original data GEO bulk
103 Dark 2day ivd 0.89 >More info -0.01 >More info 0h ivd Original data
104 dor drought 0.26 >More info 0.62 >More info WT drought Original data GEO bulk
105 eds16 whole leaf 3dpi 0.17 >More info 0.71 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
106 Mutant siz1-3 -0.31 >More info -0.56 >More info Col-0 Original data GEO bulk
107 ein3 eil1 JA -0.33 >More info -0.54 >More info JA Whole seedling Original data GEO bulk
108 siz1-3 control -0.31 >More info -0.56 >More info Col-0 control Original data GEO bulk
109 seedling 6h after HZE atm-1 0.33 >More info 0.54 >More info seedling day 1 unirradiated atm-1 6h Original data
110 Mutant sav3-2 (WL) -0.37 >More info -0.50 >More info Col-0 (WL) Original data GEO bulk
111 Heat shock optimum 0.22 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
112 sav3-2 light -0.37 >More info -0.50 >More info Col-0 light seedlings Original data GEO bulk
113 Col-0 DEX Shade 0.32 >More info 0.54 >More info Col-0 DEX WL seedlings Original data
114 Cold Stress 24 h (shoot) 0.36 >More info 0.50 >More info Stress mock 24 h (shoot) Original data Stress treatments
115 Ws leaf 100mM NaCl 0.35 >More info 0.51 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
116 tmm1-inflorescence-tips -0.28 >More info -0.58 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
117 nhx5-1/nhx6 0.26 >More info 0.60 >More info WT Rosette leaf Original data GEO bulk
118 Ws 100mM NaCl 0.35 >More info 0.51 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
119 piffq FR 3h -0.36 >More info -0.50 >More info WT FR 3h whole seedling Original data GEO bulk
120 toc1-1-77hr 0.30 >More info 0.54 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
121 Night Time Treatment -0.32 >More info -0.52 >More info Night Time Control 1hr white light pulse aerial rosette Original data
122 Red Light 4 h 0.23 >More info 0.61 >More info White Light 4 h Original data Light treatments
123 AmGSTF1 expressor 0.28 >More info 0.55 >More info WT leaf tissue Original data GEO bulk
124 sfr2 control -0.54 >More info -0.28 >More info WT control All aerial tissue Original data GEO bulk
125 Atss3 Light4 -0.31 >More info -0.51 >More info Atss3 Dark0.5 Original data GEO bulk
126 Col0-PsmES4326-24hpi 0.21 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
127 miR393 flg22 1h -0.29 >More info -0.52 >More info WT 0h Leaf tissue Original data GEO bulk
128 penta mutant (higher order mutant) 0.27 >More info 0.53 >More info col control (higher order mutant) Original data GEO bulk
129 WT flg22 1h -0.28 >More info -0.52 >More info WT 0h Leaf tissue Original data GEO bulk
130 ABA control 0.27 >More info 0.53 >More info No ABA control Original data GEO bulk
131 Atss3 Light1 -0.23 >More info -0.57 >More info Atss3 Dark0.5 Original data GEO bulk
132 ABA 3 h 0.28 >More info 0.51 >More info Mock 3 h Original data Basic hormone treatment of seedlings
133 PNO8 12 h 0.29 >More info 0.50 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
134 lht1 PstDC3000 48h -0.28 >More info -0.51 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
135 A2hsfa1-ox in quadruple mutant -0.26 >More info -0.53 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
136 WT 90-105 min Xanthomonas -0.28 >More info -0.51 >More info WT T0 Original data GEO bulk
137 Laer pretreat GA Flg22 1h 0.08 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
138 ABA 1 h 0.20 >More info 0.58 >More info Mock 1 h Original data Basic hormone treatment of seedlings
139 WT NAA/flg 1h -0.26 >More info -0.52 >More info WT 0h Leaf tissue Original data GEO bulk
140 cca1-lhy 60m light 0.24 >More info 0.54 >More info 60m light whole seedlings Original data GEO bulk
141 sid2 0.15 >More info 0.62 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
142 12h-DC3000 avrRpm1 0.15 >More info 0.62 >More info 12h-DC3000 leaves Original data GEO bulk
143 FLIGHT TAGESB plate6 SHOOTS 0.25 >More info 0.51 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
144 downy mildew cotyledons late stage -0.12 >More info -0.63 >More info mock inoculated Cotyledons Original data GEO bulk
145 WT Na2S -0.25 >More info -0.50 >More info WT water Na2S leaf Original data GEO bulk
146 Col BTH 0.08 >More info 0.67 >More info Col rosettes Original data GEO bulk
147 Mutant NahG(leaf) 0.21 >More info 0.53 >More info Col-0 (leaf) Original data GEO bulk
148 Cs root -0.21 >More info -0.53 >More info control root Original data GEO bulk
149 aba3-1 -0.13 >More info -0.61 >More info wt Original data GEO bulk
150 Light 3day wt 0.11 >More info 0.62 >More info 0h wt Original data
151 30m light -0.21 >More info -0.52 >More info before light whole seedlings Original data GEO bulk
152 bri1-116 0.00 >More info 0.73 >More info Col seedling Original data GEO bulk
153 Wt-BA-sample 0.21 >More info 0.52 >More info Wt-dmso-sample seedling Original data
154 seed germinating in countinuous light 24h SL 0.05 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
155 ABA 0.21 >More info 0.51 >More info control Original data GEO bulk
156 rosette leaves bdg 0.16 >More info 0.54 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
157 long 14-degree- -0.18 >More info -0.52 >More info control long Original data GEO bulk
158 AFB1 0h 0.10 >More info 0.60 >More info Col 0h Leaf Original data GEO bulk
159 siliques AtHb1 control 0.18 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
160 ABA SA 24h 0.16 >More info 0.53 >More info EtOH 24h 24hr Original data GEO bulk
161 ABA 24h 0.17 >More info 0.52 >More info EtOH 24h 24hr Original data GEO bulk
162 light -0.51 >More info -0.18 >More info dark light seedling Original data GEO bulk
163 Col-0 INA 48h -0.10 >More info -0.58 >More info Col-0 MOCK 48h Original data GEO bulk
164 ABA+DMTU 0.15 >More info 0.52 >More info control Original data GEO bulk
165 eds16 whole leaf 7d UI 0.10 >More info 0.57 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
166 35S::CBF2 0.10 >More info 0.56 >More info Ws2 Original data GEO bulk
167 Prohexadione 3 h 0.11 >More info 0.54 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
168 ACC 3 h 0.14 >More info 0.50 >More info Mock 3 h Original data Basic hormone treatment of seedlings
169 Shoot apex inflorescence (after bolting) -0.02 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
170 P.p 2.5hai -0.13 >More info -0.50 >More info At-Control roots Original data GEO bulk
171 Shoot submergence 7h 0.62 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
172 B.cinerea 18 h infection 0.05 >More info -0.66 >More info Mock 18 h Original data Botrytis cinerea infection
173 Botrytis cinerea 18h 0.05 >More info -0.66 >More info control 18h Original data GEO bulk
174 Elevated CO2 AMPLE N NIGHT -0.05 >More info -0.54 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
175 seedling 3h after HZE WT 0.57 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
176 Salicylic Acid 3 h -0.04 >More info -0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
177 pif4pif5 mut dark -0.06 >More info -0.51 >More info WT dark Original data GEO bulk
178 sid2-1 cold -0.01 >More info 0.57 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
179 brat1nrpe1 0.06 >More info -0.59 >More info WT Original data
180 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
181 IAA7mII over-expressor IAA Treated -0.18 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
182 SA 24h 0.02 >More info -0.53 >More info EtOH 24h 24hr Original data GEO bulk
183 4d red light grown hmr-22 seedlings 0.50 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data