4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on whole roots -Fe 6 hour
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List of experiments correlated with "whole roots -Fe 6 hour"  Help Download transcriptome of top 30
Score Experiment Correlation from
whole roots -Fe 6 hour		 Correlation to
whole roots -Fe 6 hour		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 whole roots -Fe 6 hour 1.00 >More info 1.00 >More info whole roots standard Original data GEO bulk
2 whole roots -Fe 12 hour 0.87 >More info 0.92 >More info whole roots standard Original data GEO bulk
3 whole roots -Fe 24hour 0.70 >More info 0.81 >More info whole roots standard Original data GEO bulk
4 Fe starvation 24 h 0.70 >More info 0.81 >More info Control Original data GEO bulk
5 whole roots -Fe 3 hour 0.73 >More info 0.74 >More info whole roots standard Original data GEO bulk
6 Fe starvation 3 h 0.73 >More info 0.74 >More info Control Original data GEO bulk
7 ABA 1 h 0.52 >More info 0.70 >More info Mock 1 h Original data Basic hormone treatment of seedlings
8 T101A 10mM NH4NO3 -0.69 >More info -0.49 >More info col 10mM NH4NO3 Root Original data
9 root cells epidermis 140mM NaCl 48 hours 0.74 >More info 0.43 >More info root cells epidermis standard 1 hour root cells epidermis Original data
10 T101D 10mM NH4NO3 -0.63 >More info -0.54 >More info col 10mM NH4NO3 Root Original data
11 root cells epidermis 140mM NaCl 32 hours 0.70 >More info 0.43 >More info root cells epidermis standard 1 hour root cells epidermis Original data
12 CeO2 germinant -0.52 >More info -0.60 >More info Millipore Water germinant CeO2 seedling Original data
13 root cells epidermis 140mM NaCl 8 hours 0.67 >More info 0.42 >More info root cells epidermis standard 1 hour root cells epidermis Original data
14 chl1-5 10mM NH4NO3 -0.67 >More info -0.42 >More info col 10mM NH4NO3 Root Original data
15 root cells epidermis 140mM NaCl 3 hours 0.62 >More info 0.45 >More info root cells epidermis standard 1 hour root cells epidermis Original data
16 phr1 Shoot-Pi 0.70 >More info 0.37 >More info WT Root-Pi shoots Original data GEO bulk
17 NaCl Col 0.59 >More info 0.47 >More info Col Original data GEO bulk
18 AgNO3 3 h 0.54 >More info 0.52 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
19 ABA 0.5 h 0.46 >More info 0.60 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
20 root cells endodermis 140mM NaCl 48 hours 0.64 >More info 0.41 >More info root cells endodermis standard 1 hour root cells endodermis Original data
21 root cells cortex 140mM NaCl 32 hours 0.70 >More info 0.35 >More info root cells cortex standard 1 hour root cells cortex Original data
22 Col-0 low oxygen 0.68 >More info 0.36 >More info Col-0 control low oxygen root Original data GEO bulk
23 root cells epidermis 140mM NaCl 20 hours 0.67 >More info 0.37 >More info root cells epidermis standard 1 hour root cells epidermis Original data
24 root cells cortex 140mM NaCl 48 hours 0.71 >More info 0.33 >More info root cells cortex standard 1 hour root cells cortex Original data
25 root cells stele 140mM NaCl 8 hours 0.70 >More info 0.33 >More info root cells stele standard 1 hour root cells stele Original data
26 Col-0 0h NAA 0.52 >More info 0.51 >More info Col-0 6h MOCK Original data GEO bulk
27 OXUPB1-2 meristematic zone 0.68 >More info 0.35 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
28 root cells endodermis and quiescent center -Fe 0.62 >More info 0.41 >More info whole roots standard Original data GEO bulk
29 root cells endodermis 140mM NaCl 32 hours 0.67 >More info 0.36 >More info root cells endodermis standard 1 hour root cells endodermis Original data
30 TNT-seedlings 0.41 >More info 0.62 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
31 root cells endodermis 140mM NaCl 8 hours 0.70 >More info 0.32 >More info root cells endodermis standard 1 hour root cells endodermis Original data
32 chl1-12 10mM NH4NO3 -0.64 >More info -0.38 >More info col 10mM NH4NO3 Root Original data
33 chl1-9 10mM NH4NO3 -0.64 >More info -0.37 >More info col 10mM NH4NO3 Root Original data
34 Heat shock optimum 0.36 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
35 root cells endodermis 140mM NaCl 3 hours 0.64 >More info 0.36 >More info root cells endodermis standard 1 hour root cells endodermis Original data
36 root cells endodermis 140mM NaCl 1 hour 0.66 >More info 0.34 >More info root cells endodermis standard 1 hour root cells endodermis Original data
37 root cells endodermis 140mM NaCl 20 hours 0.63 >More info 0.36 >More info root cells endodermis standard 1 hour root cells endodermis Original data
38 root cells stele 140mM NaCl 48 hours 0.61 >More info 0.38 >More info root cells stele standard 1 hour root cells stele Original data
39 Whole root - low pH 3H 0.58 >More info 0.40 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
40 root longitudinal zone-4 NaCl 0.39 >More info 0.59 >More info root longitudinal zone-4 Original data GEO bulk
41 root cells stele 140mM NaCl 32 hours 0.60 >More info 0.36 >More info root cells stele standard 1 hour root cells stele Original data
42 root cells cortex 140mM NaCl 20 hours 0.66 >More info 0.29 >More info root cells cortex standard 1 hour root cells cortex Original data
43 root cells cortex 140mM NaCl 8 hours 0.66 >More info 0.28 >More info root cells cortex standard 1 hour root cells cortex Original data
44 Col-0 V. longisporum-inoculated 48 hpi 0.61 >More info 0.33 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
45 siliques AtHb1 control 0.42 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
46 MYB46-GR DEX -0.42 >More info -0.51 >More info MYB46-GR mock Young rosette leaves (5-7th) Original data GEO bulk
47 bak1-3 +Pep2 2h 0.68 >More info 0.24 >More info WT +Pep2 2h Pep2 Original data GEO bulk
48 Control KNO3 roots - 8hours 0.64 >More info 0.27 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
49 root cells cortex 140mM NaCl 1 hour 0.56 >More info 0.35 >More info root cells cortex standard 1 hour root cells cortex Original data
50 IAA/inhibitor B Treated 0.55 >More info 0.36 >More info IAA Treated Original data GEO bulk
51 5-Triiodobenzoic acid3 h 0.54 >More info 0.37 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
52 root cells stele 140mM NaCl 3 hours 0.55 >More info 0.36 >More info root cells stele standard 1 hour root cells stele Original data
53 Leafminer damaged seedlings 0.35 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
54 bak1-3 untreated -0.50 >More info -0.40 >More info WT untreated untreated Original data GEO bulk
55 2 hr Hypoxia Total RNA 0.66 >More info 0.24 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
56 WT (Ler) CK25 0.33 >More info 0.57 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
57 Root -Cs 0.55 >More info 0.34 >More info Control-root Original data GEO bulk
58 Chitosan 3h Treatment 0.61 >More info 0.28 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
59 K starvation (root) 0.58 >More info 0.31 >More info Ws (root) Original data GEO bulk
60 Phytoprostane A1 4 h 0.56 >More info 0.32 >More info Col-0 Original data GEO bulk
61 Root -K 0.58 >More info 0.30 >More info Control-root Original data GEO bulk
62 chito-tetramer 0.53 >More info 0.34 >More info Col Mock Original data GEO bulk
63 TAMM27 roots 2hr KCl control 0.56 >More info 0.31 >More info Col0 roots 2hr KCl control root Original data GEO bulk
64 root cells stele 140mM NaCl 1 hour 0.50 >More info 0.37 >More info root cells stele standard 1 hour root cells stele Original data
65 Laer pretreat GA Flg22 1h 0.16 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
66 ein3 eil1 JA 0.51 >More info 0.33 >More info JA Whole seedling Original data GEO bulk
67 root Dosed gold 0.53 >More info 0.31 >More info root No gold .125 mM gold 24 h roots Original data
68 root stele pH4.6 0.51 >More info 0.33 >More info root stele pH5.7 Original data GEO bulk
69 0.125 mM gold 24 h 0.53 >More info 0.31 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
70 bri1-116 0.11 >More info 0.73 >More info Col seedling Original data GEO bulk
71 chito-octamer 0.57 >More info 0.26 >More info Col Mock Original data GEO bulk
72 root cells cortex 140mM NaCl 3 hours 0.53 >More info 0.29 >More info root cells cortex standard 1 hour root cells cortex Original data
73 NaCl scm -0.55 >More info -0.27 >More info NaCl Col Original data GEO bulk
74 embryo ABA 0.53 >More info 0.28 >More info embryo-control ABA embryo Original data GEO bulk
75 E.orontii Infection 3 day 0.50 >More info 0.30 >More info Uninfection 3 day Original data Elicitor treatments
76 root epidermis and lateral root cap pH4.6 0.50 >More info 0.30 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
77 Red/FR Light45min -0.29 >More info -0.51 >More info FarRed Light 45min Original data Light treatments
78 IAA 1h -0.56 >More info -0.23 >More info control 1h root Original data GEO bulk
79 WT chitooctaose 0.51 >More info 0.28 >More info WT water Original data GEO bulk
80 Root dark control 7h 0.60 >More info 0.18 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
81 9 hr Hypoxia Total RNA 0.67 >More info 0.10 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
82 FLIGHT TAGESB plate6 ROOTS 0.50 >More info 0.27 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
83 Col BTH 0.10 >More info 0.67 >More info Col rosettes Original data GEO bulk
84 Chemically 0.18 >More info 0.59 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
85 root cells cortex -Fe 0.50 >More info 0.26 >More info whole roots standard Original data GEO bulk
86 epiF3 -0.59 >More info -0.17 >More info WT Col-0 aerial part Original data
87 roots bhlh100/101 0uM Fe 0.55 >More info 0.17 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
88 Cocultivation 8 hrs root 0.56 >More info 0.16 >More info Mock cocultivation 8 hrs root Root Original data
89 Col-0 2HS 0.62 >More info 0.10 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
90 vte1-1 3d vernalization -0.51 >More info -0.20 >More info WT 3d vernalization Original data GEO bulk
91 til1-1 37C 0.51 >More info 0.20 >More info Col-0 37C Original data GEO bulk
92 cpctry 0.21 >More info 0.50 >More info Col Original data GEO bulk
93 Col0-PsmES4326-24hpi 0.09 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
94 pip3 At2g19270 TDNA 9 0.52 >More info 0.17 >More info Col-0 whole plant Original data GEO bulk
95 seedling 1.5h after HZE atm-1 0.68 >More info 0.01 >More info seedling day 1 unirradiated atm-1 1.5h Original data
96 seed germinating in countinuous light 24h SL 0.02 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
97 embryo paclobutrazol 0.51 >More info 0.18 >More info embryo-control paclobutrazol embryo Original data GEO bulk
98 IAA7mII over-expressor IAA Treated -0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
99 CCA1-ox 6am non-polysomal 0.18 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
100 root hypoxia total 0.51 >More info 0.17 >More info root control total Original data GEO bulk
101 35S:ORE1-protoplast 6h -0.50 >More info -0.18 >More info WT none mesophyll cell protoplasts Original data GEO bulk
102 Shoot apex inflorescence (after bolting) 0.02 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
103 2d dark-grown WT(Col-0)/1 hr red light 0.50 >More info 0.16 >More info 2d dark-grown WT seedling Original data GEO bulk
104 ckh1 CK0 0.60 >More info 0.05 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
105 170G5-16 0.52 >More info 0.13 >More info Ler-2 ~600 pooled 7 mm root tips Original data GEO bulk
106 ERF115OE roottip5days -0.52 >More info -0.12 >More info Col-0 roottip5days root tips Original data
107 Root dark control 24h 0.50 >More info 0.13 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
108 root control pSCR 0.63 >More info -0.01 >More info root control total control root Original data GEO bulk
109 KAN1-GR 60min 0.53 >More info 0.08 >More info KAN1-GR 0min Original data GEO bulk
110 IPT8 induced 12h 0.55 >More info 0.05 >More info Control 12h 12 hours primary root tip (5 mm) Original data GEO bulk
111 GO5; 8h switch to ambient CO2 concentrations; 0.56 >More info 0.02 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
112 9 hr Hypoxia IP RNA 0.53 >More info 0.04 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
113 Ws 100mM NaCl 0.54 >More info 0.01 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
114 Ws leaf 100mM NaCl 0.54 >More info 0.01 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
115 seedling 3h after HZE WT 0.53 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
116 FLIGHT BRIC G PDFU-359 tissue -0.50 >More info -0.01 >More info GROUND BRIC G PDFU-255 tissue cultured cells Original data
117 GA 0.50 >More info -0.00 >More info none GA Rosette Original data GEO bulk
118 pmr5 0.52 >More info -0.02 >More info Col-0 rosette Original data GEO bulk
119 WT (Col) glucose -0.52 >More info 0.03 >More info WT (Col) glucose seedlings Original data GEO bulk
120 gun4-1 0.52 >More info -0.05 >More info WT Col-0 seedling Original data GEO bulk
121 WT roots - Fe 0.12 >More info -0.59 >More info WT roots + Fe Roots Original data GEO bulk
122 Propiconazole 12 h 0.54 >More info -0.08 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
123 Paclobutrazol 12 h 0.54 >More info -0.08 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
124 12h-DC3000 avrRpm1 0.09 >More info -0.54 >More info 12h-DC3000 leaves Original data GEO bulk