4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Root submergence 7h
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List of experiments correlated with "Root submergence 7h"  Help Download transcriptome of top 30
Score Experiment Correlation from
Root submergence 7h		 Correlation to
Root submergence 7h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Root submergence 7h 1.00 >More info 1.00 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
2 Root dark control 7h 0.93 >More info 0.95 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
3 Root submergence 24h 0.93 >More info 0.91 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
4 Root dark control 24h 0.92 >More info 0.92 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
5 cngc4 0.74 >More info 0.80 >More info Ws-2 Seedlings Original data GEO bulk
6 WT (Col) glucose -0.68 >More info -0.78 >More info WT (Col) glucose seedlings Original data GEO bulk
7 seedling 1.5h after HZE atm-1 0.72 >More info 0.73 >More info seedling day 1 unirradiated atm-1 1.5h Original data
8 roots bhlh100/101 0uM Fe 0.68 >More info 0.72 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
9 Shoot dark control 7h 0.69 >More info 0.70 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
10 Shoot submergence 24h 0.69 >More info 0.68 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
11 4d red light grown hmr-5 seedlings 0.69 >More info 0.66 >More info 4d red light grown WT(Col-0) seedlings Original data
12 root - 01% oxygen - 2h 0.57 >More info 0.77 >More info root - 21% oxygen - 2h Original data GEO bulk
13 Shoot dark control 24h 0.65 >More info 0.68 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
14 oas-a1.1 root -0.55 >More info -0.76 >More info WT-Untreated Root Original data GEO bulk
15 Pseudomonas 0.64 >More info 0.66 >More info Control pseudomonas treated whole seedling Original data GEO bulk
16 spch 0.64 >More info 0.66 >More info Col-0 WT whole seedling Original data GEO bulk
17 Nicotinamide-73hr 0.64 >More info 0.65 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
18 vte1-1 3d vernalization -0.64 >More info -0.64 >More info WT 3d vernalization Original data GEO bulk
19 seedling 1.5h after HZE WT 0.70 >More info 0.58 >More info seedling day 1 unirradiated WT 1.5h Original data
20 max3GR24 (1 uM) -0.60 >More info -0.64 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
21 low CO2 + light 0.58 >More info 0.66 >More info normal CO2 + light Original data GEO bulk
22 Day Time Treatment -0.60 >More info -0.63 >More info Day Time Control 1hr white light pulse aerial rosette Original data
23 detached inflorescences 24h 0.57 >More info 0.66 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
24 4h decapitation -0.49 >More info -0.71 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
25 Col-0 low oxygen 0.60 >More info 0.59 >More info Col-0 control low oxygen root Original data GEO bulk
26 Col-0 C2H4 24h 0.60 >More info 0.59 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
27 low CO2 + dark 0.54 >More info 0.65 >More info normal CO2 + light Original data GEO bulk
28 toc1-1-53hr 0.49 >More info 0.70 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
29 Nicotinamide-49hr 0.61 >More info 0.57 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
30 mil4 sid2 0.53 >More info 0.64 >More info Col rosettes Original data GEO bulk
31 Night Time Treatment -0.53 >More info -0.63 >More info Night Time Control 1hr white light pulse aerial rosette Original data
32 Cd 18h root -0.43 >More info -0.73 >More info WT-Untreated Root Original data GEO bulk
33 ein2-1 +elf18 2h -0.56 >More info -0.58 >More info WT +elf18 2h elf18 Original data GEO bulk
34 sex1-3 0.47 >More info 0.67 >More info Col-WT leaves Original data GEO bulk
35 1 h Light Total RNA -0.53 >More info -0.60 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
36 iron minus 0 h 0.64 >More info 0.48 >More info iron +0 h root Original data GEO bulk
37 Nicotinamide-69hr 0.54 >More info 0.58 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
38 Dark 6h ivd 0.63 >More info 0.49 >More info 0h ivd Original data
39 toc1-1-73hr 0.46 >More info 0.66 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
40 gun4-1 0.56 >More info 0.55 >More info WT Col-0 seedling Original data GEO bulk
41 toc1-1-77hr 0.46 >More info 0.65 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
42 gun5 norflurazon 0.59 >More info 0.52 >More info gun5 control Original data GEO bulk
43 8 hr ammonium 0.57 >More info 0.54 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
44 tt4 0.54 >More info 0.56 >More info Col-0 aerial part Original data
45 root - 04% oxygen - 2h 0.30 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
46 gun1-9 control -0.37 >More info -0.73 >More info Col-0 control Original data GEO bulk
47 gun1gun5 drak pretreated 0.47 >More info 0.62 >More info WT drak pretreated Original data GEO bulk
48 root hypoxia total 0.43 >More info 0.65 >More info root control total Original data GEO bulk
49 roots ethylene 0.37 >More info 0.71 >More info roots air Original data GEO bulk
50 ein2 mutant roots mock -0.49 >More info -0.59 >More info roots mock Original data GEO bulk
51 pap1-D/tt4 0.55 >More info 0.52 >More info Col-0 aerial part Original data
52 MIL4 ox 0.52 >More info 0.55 >More info Col Original data GEO bulk
53 Nicotinamide-93hr 0.54 >More info 0.52 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
54 Dark 3day hml 0.59 >More info 0.47 >More info 0h hml Original data
55 WT Root Hypoxia 0.40 >More info 0.66 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
56 RGA-GR-DEX 0.50 >More info 0.55 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
57 Dark 3day wt 0.58 >More info 0.47 >More info 0h wt Original data
58 sfr6 control -0.58 >More info -0.47 >More info WT control All aerial tissue Original data GEO bulk
59 9 hr Hypoxia Total RNA 0.53 >More info 0.51 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
60 petiole in D 0.52 >More info 0.52 >More info petiole in WL petioles Original data GEO bulk
61 F1 hybrid submerged 0.41 >More info 0.63 >More info F1 hybrid air Original data GEO bulk
62 estradiole-induced ANAC059 -0.45 >More info -0.59 >More info transgenic (empty vector inducible system) Original data GEO bulk
63 mbd4 mutant thaliana 10-day-old seedling 0.57 >More info 0.46 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
64 leaf blade in D 0.50 >More info 0.53 >More info leaf blade in WL leaf blades Original data GEO bulk
65 Dark 1day ivd 0.57 >More info 0.45 >More info 0h ivd Original data
66 Dark 1day wt 0.59 >More info 0.43 >More info 0h wt Original data
67 Dark 1day hml 0.56 >More info 0.45 >More info 0h hml Original data
68 Dark 3day ivd 0.55 >More info 0.46 >More info 0h ivd Original data
69 ABA JA 24h 0.33 >More info 0.68 >More info EtOH 24h 24hr Original data GEO bulk
70 Whole root - S 3H -0.40 >More info -0.61 >More info Whole root - S 0H Original data GEO bulk
71 ein2-1 +elf18 10h -0.49 >More info -0.52 >More info WT +elf18 10h elf18 Original data GEO bulk
72 MYB12OX/tt4 0.53 >More info 0.47 >More info Col-0 aerial part Original data
73 Dark 6h wt 0.62 >More info 0.38 >More info 0h wt Original data
74 ACC 3 h 0.34 >More info 0.66 >More info Mock 3 h Original data Basic hormone treatment of seedlings
75 roottip hypoxia total 0.42 >More info 0.58 >More info roottip control total Original data GEO bulk
76 ein2-1 +Pep2 2h -0.43 >More info -0.57 >More info WT +Pep2 2h Pep2 Original data GEO bulk
77 Col BTH 0.33 >More info 0.67 >More info Col rosettes Original data GEO bulk
78 ga1-3 scl3-1 -0.50 >More info -0.49 >More info ga1-3 whole root Original data
79 camta1 root drought 0.51 >More info 0.48 >More info Col-0 root drought root Original data GEO bulk
80 Dark 6h hml 0.62 >More info 0.37 >More info 0h hml Original data
81 edr1 36 h powdery mildew 0.52 >More info 0.47 >More info Col-0 36 h powdery mildew Original data GEO bulk
82 R. sylvestris submerged 0.39 >More info 0.60 >More info R. sylvestris air Original data GEO bulk
83 tmm1-inflorescence-tips -0.35 >More info -0.64 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
84 aux1 mutant roots ethylene 0.36 >More info 0.63 >More info roots air Original data GEO bulk
85 P.p 6hai 0.60 >More info 0.38 >More info At-Control roots Original data GEO bulk
86 WT-16ºC -0.56 >More info -0.42 >More info WT-23ºC Original data GEO bulk
87 Dark 2day hml 0.56 >More info 0.42 >More info 0h hml Original data
88 ABA 3h -0.47 >More info -0.51 >More info EtOH 3h 3hr Original data GEO bulk
89 pepr1-1 Pepr2-3 +Pep2 10h -0.46 >More info -0.52 >More info WT +Pep2 10h Pep2 Original data GEO bulk
90 AmGSTF1 expressor 0.41 >More info 0.57 >More info WT leaf tissue Original data GEO bulk
91 sid2 0.43 >More info 0.55 >More info Col rosettes Original data GEO bulk
92 Nicotinamide-65hr 0.50 >More info 0.47 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
93 Dark 2day wt 0.54 >More info 0.43 >More info 0h wt Original data
94 ga1-3 SCL3OE -0.54 >More info -0.43 >More info ga1-3 whole root Original data
95 Col(gl) leaf 100mM NaCl 0.44 >More info 0.53 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
96 Col(gl) 100mM NaCl 0.44 >More info 0.53 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
97 P.p 10.5hai 0.62 >More info 0.34 >More info At-Control roots Original data GEO bulk
98 E.orontii Infection 6 h 0.36 >More info 0.60 >More info Uninfection 6 h Original data Elicitor treatments
99 phyABDE Rc50 -0.41 >More info -0.55 >More info phyABDE Dark red light whole seedling Original data GEO bulk
100 hai1-2 low water potential 0.43 >More info 0.53 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
101 AgNO3 3 h 0.40 >More info 0.55 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
102 elevated CO2 normal Mg root -0.51 >More info -0.44 >More info atmospheric CO2 normal Mg root Root Original data
103 COL-0-Fe--shoot -0.52 >More info -0.43 >More info COL-0-Ctrl--shoot shoot Original data
104 Osmotic Stress 24 h (root) 0.52 >More info 0.43 >More info Stress mock 24 h (root) Original data Stress treatments
105 ANOXIA 0.41 >More info 0.54 >More info ANOXIA+SUCROSE Original data GEO bulk
106 bri1-116 0.22 >More info 0.73 >More info Col seedling Original data GEO bulk
107 seedling 24h after Gamma WT -0.40 >More info -0.54 >More info seedling day 2 unirradiated WT 24h Original data
108 ein2 mutant roots IAA -0.50 >More info -0.44 >More info roots ethylene Original data GEO bulk
109 seedling 24h after Gamma atm-1 -0.41 >More info -0.53 >More info seedling day 2 unirradiated atm-1 24h Original data
110 FarRed Light 45min 0.28 >More info 0.65 >More info White Light 45min Original data Light treatments
111 Nicotinamide-57hr 0.40 >More info 0.53 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
112 Full C2 T2 0.36 >More info 0.57 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
113 ARR22-ox (t-zeatin 3 h) 0.38 >More info 0.54 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
114 ein2-1 untreated -0.36 >More info -0.56 >More info WT untreated untreated Original data GEO bulk
115 CeO2 germinant -0.25 >More info -0.67 >More info Millipore Water germinant CeO2 seedling Original data
116 mutant acs2C (single mutant) 0.42 >More info 0.50 >More info col control (single mutant) Original data GEO bulk
117 short 17-degree- -0.23 >More info -0.68 >More info control short Original data GEO bulk
118 R. amphibia submerged 0.38 >More info 0.53 >More info R. amphibia air Original data GEO bulk
119 10mM sucrose -0.51 >More info -0.39 >More info control Whole seedling Original data GEO bulk
120 high-R:FR bud axillary -0.38 >More info -0.52 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
121 WT cold -0.38 >More info -0.52 >More info WT control All aerial tissue Original data GEO bulk
122 sfr3 cold 0.34 >More info 0.55 >More info WT cold All aerial tissue Original data GEO bulk
123 gun1-9 norflurazon 0.55 >More info 0.33 >More info gun1-9 control Original data GEO bulk
124 TNT-seedlings 0.25 >More info 0.63 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
125 35S:VND7-VP16-GR+CHX -0.16 >More info -0.72 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
126 SCR-GR Time 1H Dex 0.29 >More info 0.59 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
127 ptpks2 -0.19 >More info -0.69 >More info Col-WT leaves Original data GEO bulk
128 nbp35-3/- 0.59 >More info 0.28 >More info WT whole seedling Original data GEO bulk
129 Cocultivation 8 hrs leaf 0.51 >More info 0.36 >More info Mock cocultivation 8 hrs leaf Leaf Original data
130 Stem+10 mg/g NPA -0.34 >More info -0.52 >More info Stem (mock control) NPA treated stem stem Original data GEO bulk
131 sfr6 drought -0.36 >More info -0.50 >More info WT drought All aerial tissue Original data GEO bulk
132 atmyc2 cop1 Seedling BL 0.31 >More info 0.54 >More info WT Seedling BL Original data GEO bulk
133 IAA 2h 0.30 >More info 0.55 >More info control 2h root Original data GEO bulk
134 Col-0 wt Hypoxic 0.23 >More info 0.62 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
135 Col0-PsmES4326-24hpi 0.24 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
136 tZ -0.34 >More info -0.50 >More info DMSO--WT trans-zeatin roots Original data GEO bulk
137 SA 4mM 0.31 >More info 0.52 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
138 3x(p) 0.32 >More info 0.51 >More info 2x two week old seedlings Original data
139 PNO8 12 h 0.30 >More info 0.51 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
140 Col upon hypoxia 6 hrs 0.29 >More info 0.52 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
141 Leafminer damaged seedlings 0.24 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
142 MPK6 ox Shoot Hypoxia 0.26 >More info 0.53 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
143 4C 24h -0.28 >More info -0.51 >More info 4C 0h Original data GEO bulk
144 elf3-7-23ºC -0.57 >More info -0.22 >More info WT-23ºC Original data GEO bulk
145 seedling SPL13 0.22 >More info 0.56 >More info seedling Col-0 Original data GEO bulk
146 Heat shock optimum 0.13 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
147 Col-0 (t-zeatin 3 h) -0.25 >More info -0.51 >More info Col-0 Original data Cytokinin treatment of seedlings
148 upb1-1 elongation zone -0.22 >More info -0.54 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
149 0.2µM SMX -0.24 >More info -0.51 >More info control Whole seedling Original data GEO bulk
150 seedling 3h after HZE WT 0.72 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
151 Laer pretreat GA Flg22 1h 0.03 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
152 siliques AtHb1 control 0.22 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
153 Shoot submergence 7h 0.73 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
154 roottip control pWOL 0.15 >More info 0.58 >More info roottip control total control roottip Original data GEO bulk
155 seed germinating in countinuous light 24h SL 0.05 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
156 WT Shoot Hypoxia 0.18 >More info 0.53 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
157 Total RNA 35S:AtCSP1-FH1 cold -0.12 >More info -0.59 >More info Total RNA csp1 cold 12h cold (4C) rosettes Original data GEO bulk
158 E.orontii Infection 3 day 0.18 >More info 0.52 >More info Uninfection 3 day Original data Elicitor treatments
159 Aerobic e1 ate2 0.10 >More info 0.60 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
160 root - 08% oxygen - 2h 0.01 >More info 0.68 >More info root - 21% oxygen - 2h Original data GEO bulk
161 myb3 myb3r4d 0.17 >More info 0.52 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
162 toc1-1-85hr 0.13 >More info 0.55 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
163 Roots Cd -0.14 >More info -0.54 >More info Roots control Cd Root Original data GEO bulk
164 Shoot apex inflorescence (after bolting) 0.02 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
165 Cs root -0.11 >More info -0.55 >More info control root Original data GEO bulk
166 IAA7mII over-expressor IAA Treated -0.04 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
167 sfr2 control -0.56 >More info -0.08 >More info WT control All aerial tissue Original data GEO bulk
168 root - 04% oxygen - 48h 0.12 >More info 0.50 >More info root - 21% oxygen - 48h Original data GEO bulk
169 agb1 -ABA LF 0.05 >More info 0.56 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
170 ABA 1 h -0.03 >More info -0.57 >More info Mock 1 h Original data Basic hormone treatment of seedlings
171 ABA 0.5 h -0.07 >More info -0.50 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
172 AsAKiin11 T2 0.06 >More info 0.51 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
173 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
174 Dark 2day ivd 0.55 >More info -0.01 >More info 0h ivd Original data
175 4d red light grown hmr-22 seedlings 0.69 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data