4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root columella root cap 40 mM NaCl
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Score Experiment Correlation from
root columella root cap 40 mM NaCl		 Correlation to
root columella root cap 40 mM NaCl		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root columella root cap 40 mM NaCl 1.00 >More info 1.00 >More info root columella root cap Original data GEO bulk
2 root stele 40 mM NaCls 0.80 >More info 0.80 >More info root stele Original data GEO bulk
3 root endodermis and quiescent center 40 mM NaCl 0.73 >More info 0.82 >More info root endodermis and quiescent center Original data GEO bulk
4 root protophloem 40 mM NaCl 0.74 >More info 0.78 >More info root protophloem Original data GEO bulk
5 root longitudinal zone-1 NaCl 0.75 >More info 0.72 >More info root longitudinal zone-1 Original data GEO bulk
6 NaCl Col 0.75 >More info 0.71 >More info Col Original data GEO bulk
7 whole roots 140 mM NaCl 4 hour 0.73 >More info 0.71 >More info whole roots standard Original data GEO bulk
8 whole roots 140 mM NaCl 1 hour 0.76 >More info 0.65 >More info whole roots standard Original data GEO bulk
9 root epidermis and lateral root cap 40 mM NaCl 0.70 >More info 0.67 >More info root epidermis and lateral root cap Original data GEO bulk
10 rosettes WT drought 0.71 >More info 0.65 >More info rosettes WT watered Original data GEO bulk
11 6h +Pi -0.66 >More info -0.70 >More info 6h -Pi root Original data GEO bulk
12 whole roots 140 mM NaCl 30 minutes 0.67 >More info 0.67 >More info whole roots standard Original data GEO bulk
13 root longitudinal zone-4 NaCl 0.67 >More info 0.67 >More info root longitudinal zone-4 Original data GEO bulk
14 root cells cortex 140mM NaCl 1 hour 0.66 >More info 0.66 >More info root cells cortex standard 1 hour root cells cortex Original data
15 root cells stele 140mM NaCl 1 hour 0.67 >More info 0.63 >More info root cells stele standard 1 hour root cells stele Original data
16 Salt Stress 24 h (root) 0.73 >More info 0.55 >More info Stress mock 24 h (root) Original data Stress treatments
17 Osmotic Stress 24 h (root) 0.70 >More info 0.58 >More info Stress mock 24 h (root) Original data Stress treatments
18 rosettes myoox drought 0.66 >More info 0.60 >More info rosettes myoox watered Original data GEO bulk
19 C2 leaf-drought 0.66 >More info 0.60 >More info C2 leaf-well watered Original data GEO bulk
20 root longitudinal zone-3 NaCl 0.63 >More info 0.63 >More info root longitudinal zone-3 Original data GEO bulk
21 root longitudinal zone-2 NaCl 0.61 >More info 0.62 >More info root longitudinal zone-2 Original data GEO bulk
22 root cells epidermis 140mM NaCl 1 hour 0.57 >More info 0.66 >More info root cells epidermis standard 1 hour root cells epidermis Original data
23 ABA 3 h 0.64 >More info 0.59 >More info Mock 3 h Original data Basic hormone treatment of seedlings
24 SCR 24hr-S 0.56 >More info 0.65 >More info SCR 0hr endodermis Original data
25 Phytoprostane A1 4 h 0.56 >More info 0.64 >More info Col-0 Original data GEO bulk
26 root cells stele 140mM NaCl 3 hours 0.64 >More info 0.55 >More info root cells stele standard 1 hour root cells stele Original data
27 SCR 48hr-S 0.53 >More info 0.65 >More info SCR 0hr endodermis Original data
28 ABA DFPM 0.67 >More info 0.51 >More info control Original data GEO bulk
29 ced1 -0.64 >More info -0.54 >More info WT PEG 6hr seedlings Original data GEO bulk
30 Fenclorim 4hr 0.62 >More info 0.54 >More info Acetone 4hr root Original data GEO bulk
31 TNT-seedlings 0.45 >More info 0.71 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
32 Col-0 under 4 days salt 0.65 >More info 0.50 >More info Col-0 under control 4 days salt treatment rosette Original data
33 root cells endodermis 140mM NaCl 1 hour 0.54 >More info 0.61 >More info root cells endodermis standard 1 hour root cells endodermis Original data
34 plant (tga2-5-6) 4h phytoprostane A1 0.53 >More info 0.62 >More info plant (tga2-5-6) 4h control Original data GEO bulk
35 Cold Stress 24 h (root) 0.64 >More info 0.51 >More info Stress mock 24 h (root) Original data Stress treatments
36 Cocultivation 8 hrs root 0.55 >More info 0.60 >More info Mock cocultivation 8 hrs root Root Original data
37 WT leaf-drought 0.65 >More info 0.48 >More info WT leaf-well watered Original data GEO bulk
38 whole roots 140 mM NaCl 16 hour 0.60 >More info 0.53 >More info whole roots standard Original data GEO bulk
39 dicamba 0.62 >More info 0.51 >More info WT mock whole seedling Original data GEO bulk
40 Col-0 low oxygen 0.56 >More info 0.56 >More info Col-0 control low oxygen root Original data GEO bulk
41 SCR-GR Time 12H Dex 0.57 >More info 0.55 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
42 WT 30μM arsenate 8 hours. 0.55 >More info 0.57 >More info WT control (not supplemented). Original data
43 Col-0 drought 0.62 >More info 0.50 >More info Col-0 control Original data GEO bulk
44 root BA 12h 0.56 >More info 0.55 >More info root control 12h boron (5mM) root Original data GEO bulk
45 Osmotic Stress 24 h (shoot) 0.63 >More info 0.48 >More info Stress mock 24 h (shoot) Original data Stress treatments
46 rosettes drought 0.64 >More info 0.47 >More info rosettes watered Original data GEO bulk
47 Col-0 flu HL 3h 0.64 >More info 0.47 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
48 Col0-PsmES4326-24hpi 0.50 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
49 WT H2O2 3h 0.57 >More info 0.52 >More info WT water 3h 3h_H2O2 Original data GEO bulk
50 root Dosed gold 0.59 >More info 0.50 >More info root No gold .125 mM gold 24 h roots Original data
51 Col-O high light 0.60 >More info 0.49 >More info Col-O bule light Original data GEO bulk
52 0.125 mM gold 24 h 0.59 >More info 0.50 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
53 HSP90 Reduced RNAi-A2 0.51 >More info 0.58 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
54 plant (Col-0) 4h phytoprostane A1 0.52 >More info 0.56 >More info plant (tga2-5-6) 4h control Original data GEO bulk
55 ABA SA 3h 0.53 >More info 0.54 >More info EtOH 3h 3hr Original data GEO bulk
56 NJ15 0.45 >More info 0.62 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
57 CMP 4hr 0.58 >More info 0.49 >More info Acetone 4hr root Original data GEO bulk
58 8hr-pH4.5 0.52 >More info 0.54 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
59 WT 24H Cold 0.56 >More info 0.50 >More info WT control Original data GEO bulk
60 HSP90 Reduced RNAi-B1 0.54 >More info 0.52 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
61 Heat and anoxia 0.50 >More info 0.55 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
62 T8 leaf-drought 0.57 >More info 0.48 >More info T8 leaf-well watered Original data GEO bulk
63 5-Triiodobenzoic acid3 h 0.37 >More info 0.67 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
64 flu over-tAPX 0.48 >More info 0.55 >More info WT Col Original data GEO bulk
65 AgNO3 3 h 0.42 >More info 0.60 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
66 flu 0.48 >More info 0.54 >More info WT Col Original data GEO bulk
67 ABA JA 3h 0.44 >More info 0.58 >More info EtOH 3h 3hr Original data GEO bulk
68 35S::PI ap3-3 35S::AP-GR +DEX 0.33 >More info 0.69 >More info 0hr DEX Original data GEO bulk
69 Seedling-HeatStressed POLYSOMESmRNA 0.48 >More info 0.54 >More info Seedling-control POLYSOMESmRNA seedling Original data
70 root cells stele 140mM NaCl 8 hours 0.54 >More info 0.47 >More info root cells stele standard 1 hour root cells stele Original data
71 embryo paclobutrazol 0.58 >More info 0.43 >More info embryo-control paclobutrazol embryo Original data GEO bulk
72 CMP 24hr 0.58 >More info 0.43 >More info Acetone 24hr root Original data GEO bulk
73 SCR 72hr-S 0.43 >More info 0.57 >More info SCR 0hr endodermis Original data
74 oligomycin 4 h 0.56 >More info 0.43 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
75 Seedling KUA1-IOX est 0.51 >More info 0.48 >More info Seedling KUA1-IOX mock Original data
76 hai1-2 low water potential 0.54 >More info 0.45 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
77 (Col-0)+200 uM As 0.49 >More info 0.50 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
78 Col-0 0h NAA 0.45 >More info 0.54 >More info Col-0 6h MOCK Original data GEO bulk
79 cat2-2; 8h switch to ambient CO2 concentrations; 0.46 >More info 0.53 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
80 Fenclorim 24hr 0.58 >More info 0.39 >More info Acetone 24hr root Original data GEO bulk
81 whole roots 140 mM NaCl 32 hour 0.56 >More info 0.41 >More info whole roots standard Original data GEO bulk
82 low CO2 + light 0.45 >More info 0.52 >More info normal CO2 + light Original data GEO bulk
83 Shoot -Cs 0.31 >More info 0.66 >More info Control-shoot Original data GEO bulk
84 Leafminer damaged seedlings 0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
85 SCR 96hr-S 0.43 >More info 0.54 >More info SCR 0hr endodermis Original data
86 JA 0.56 >More info 0.40 >More info Col-0 mock Whole seedling Original data GEO bulk
87 gul2-1 mutant 0.56 >More info 0.40 >More info WT 7 day-old whole seedlings Original data
88 WT (Col-0) inflorescence drought day 10 0.55 >More info 0.41 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
89 WT Seedling BL+ABA 0.51 >More info 0.45 >More info WT Seedling BL Original data GEO bulk
90 cell culture 4 h phytoprostane A1 0.46 >More info 0.50 >More info cell culture 4 h control Original data GEO bulk
91 siliques AtHb1 control 0.44 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
92 8-DAC chr11-1chr17-1 0.55 >More info 0.40 >More info 8-DAC Col-0 leaf explants Original data
93 pil5 red light 0.51 >More info 0.44 >More info Col-0 red light Original data GEO bulk
94 root columella root cap pH4.6 0.56 >More info 0.38 >More info root columella root cap pH5.7 Original data GEO bulk
95 low water potential 0.53 >More info 0.41 >More info control Col-0 -1.2 MPa whole seedlings Original data GEO bulk
96 embryo ABA 0.50 >More info 0.44 >More info embryo-control ABA embryo Original data GEO bulk
97 Col-0 HS 0.39 >More info 0.54 >More info Col-0 control heat shocked seedling Original data GEO bulk
98 WT (Col-0) heat shock 0.39 >More info 0.54 >More info WT (Col-0) whole seedling Original data GEO bulk
99 Salt Stress 24 h (shoot) 0.50 >More info 0.43 >More info Stress mock 24 h (shoot) Original data Stress treatments
100 WT AntimycinA 3h 0.51 >More info 0.42 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
101 dor drought 0.54 >More info 0.38 >More info WT drought Original data GEO bulk
102 rosette Dark Wounded 0.39 >More info 0.53 >More info rosette Dark Control Original data GEO bulk
103 9 hr Hypoxia 1 hr recovery Total RNA 0.38 >More info 0.54 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
104 6 h SL WT -0.51 >More info -0.41 >More info 0 h WT seed Original data
105 Ws 100mM NaCl 0.50 >More info 0.42 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
106 Ws leaf 100mM NaCl 0.50 >More info 0.42 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
107 HopZ1a treated ulp1c ulp1d 0.51 >More info 0.41 >More info col Original data GEO bulk
108 24h SL WT -0.55 >More info -0.36 >More info 0 h WT seed Original data
109 inhibitor B Treated 0.39 >More info 0.52 >More info Negative Control Original data GEO bulk
110 toc1-1-53hr 0.28 >More info 0.63 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
111 Heat shock optimum 0.26 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
112 GO5; 8h switch to ambient CO2 concentrations; 0.35 >More info 0.56 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
113 4d red light grown hmr-5 seedlings 0.56 >More info 0.34 >More info 4d red light grown WT(Col-0) seedlings Original data
114 WT (Col-0) inflorescence drought day 5 0.50 >More info 0.40 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
115 WT seedlings MV 0.39 >More info 0.51 >More info WT seedlings control Seedlings Original data GEO bulk
116 ABA 24h 0.50 >More info 0.39 >More info EtOH 24h 24hr Original data GEO bulk
117 hira-root -0.38 >More info -0.51 >More info WT-root root Original data
118 inhibitor A Treated 0.36 >More info 0.52 >More info Negative Control Original data GEO bulk
119 rosettes atx drought 0.56 >More info 0.31 >More info rosettes atx watered Original data GEO bulk
120 Laer pretreat JA Flg22 0h 0.36 >More info 0.51 >More info Laer pretreat water control leaf discs Original data GEO bulk
121 24h SL Attim 17-1 1 -0.52 >More info -0.34 >More info 0 h Attim 17-1 1 seed Original data
122 Heat no recovery 0.51 >More info 0.35 >More info Mock no recovery seedling Original data GEO bulk
123 Homozygous-AtcesA4 0.52 >More info 0.33 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
124 2hr continuous KNO3 PeR cell -0.15 >More info -0.70 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
125 cat2-short-day 2d 0.29 >More info 0.53 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
126 Mutant axr3-1 (IAA) 0.25 >More info 0.57 >More info Col (IAA) Original data GEO bulk
127 toc1-1-73hr 0.29 >More info 0.52 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
128 gpa1 -ABA GC -0.24 >More info -0.56 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
129 Mutant axr3-1 0.24 >More info 0.54 >More info Col Original data GEO bulk
130 frb1 mutant 0.50 >More info 0.27 >More info WT whole seedling Original data GEO bulk
131 Col BTH 0.08 >More info 0.67 >More info Col rosettes Original data GEO bulk
132 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
133 Laer pretreat GA Flg22 1h 0.02 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
134 Col0 roots 2hr KNO3 nitrogen -0.17 >More info -0.52 >More info Col0 roots 2hr KCl control root Original data GEO bulk
135 35S:VND7-VP16-GR+DEX +CHX 0.17 >More info 0.51 >More info 35S:VND7-VP16-GR+CHX 10mM cycloheximide (CHX) 2hrs followed by 10mM dexamethazone (DEX) 4hrs whole seedlings Original data GEO bulk
136 Stem wox4 -0.50 >More info -0.18 >More info Stem Col first internode of stem Original data GEO bulk
137 toc1-1-85hr 0.11 >More info 0.56 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
138 35S:VND7-VP16-GR+CHX 0.05 >More info 0.59 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
139 opr3 OPDA 8 h 0.09 >More info 0.53 >More info opr3 0 h Original data GEO bulk
140 IAA7mII over-expressor IAA Treated -0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
141 FarRed Light 45min -0.01 >More info -0.55 >More info White Light 45min Original data Light treatments
142 fls1-3 0.01 >More info 0.54 >More info Col-0 Rosette leaves Original data
143 seed germinating in countinuous light 24h SL -0.14 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
144 DUO1 induced 6h -0.04 >More info 0.53 >More info 6hr-not-induced whole plant Original data GEO bulk
145 ABA 0.65 >More info -0.22 >More info control Original data GEO bulk
146 QC pSCR 3h BL -0.13 >More info 0.54 >More info QC pSCR 0h BL brassinosteroid root Original data
147 Shoot apex inflorescence (after bolting) -0.27 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
148 CCA1-ox 6am non-polysomal -0.13 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data