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Module-based correlation network(MCN) centered on Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
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Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
Correlation to
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
Control Experiment Genotype Treatment Tissue Link to
original data
Experimental
Category
Data set
Details
1 Regenerating Stump Root Tip Cut 130 mm andn Recut
13 hrs Taking 70 mm of Stump (4dpg)
1.00 >More info 1.00 >More info Control for tissue data Original data GEO bulk
2 Regenerating Stump Root Tip Cut 130 mm andn Recut
22 hrs Taking 70 mm of Stump (4dpg)
0.97 >More info 0.97 >More info Control for tissue data Original data GEO bulk
3 Regenerating Stump Root Tip Cut 130 mm andn Recut
5 hrs Taking 70 mm of Stump (4dpg)
0.97 >More info 0.97 >More info Control for tissue data Original data GEO bulk
4 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (4dpg)
0.95 >More info 0.96 >More info Control for tissue data Original data GEO bulk
5 Section Root from70 mm to 340 mm harvested
immediately
0.95 >More info 0.96 >More info Control for tissue data Original data GEO bulk
6 Regenerating Stump Root Tip Cut 130 mm andn Recut
0 hrs Taking 70 mm of Stump (8 dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
7 Root from tip to 130 mm proximal to tip (cut
4dpg)
0.94 >More info 0.96 >More info Control for tissue data Original data GEO bulk
8 Root from tip to 130 mm proximal to tip (cut
8dpg)
0.95 >More info 0.95 >More info Control for tissue data Original data GEO bulk
9 Callus 0.91 >More info 0.90 >More info Control for tissue data callus Original data GEO bulk
10 seed germinating in countinuous light 48 h SL 0.92 >More info 0.89 >More info Control for tissue data seed Original data GEO bulk
11 Atape2 low light 0.91 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
12 Shoot apex vegetative 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
13 Shoot apex transition (before bolting) 0.91 >More info 0.90 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
14 seed germinating in countinuous light 6 h SL 0.90 >More info 0.90 >More info Control for tissue data seed Original data GEO bulk
15 Shoot apex vegetative &Young leaves 0.91 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
16 Mature roots 0.91 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
17 Hypocotyl 0.91 >More info 0.89 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
18 lec1-1 Mature Green Seed 0.91 >More info 0.89 >More info Control for tissue data Original data GEO bulk
19 torpedo-basal 0.90 >More info 0.90 >More info Control for tissue data torpedo embryo basal tissue Original data GEO bulk
20 Ambient CO2 leaf primordia 0.91 >More info 0.88 >More info Control for tissue data leaf primordia Original data
21 lec1-1 24h post-fertilization Seed 0.90 >More info 0.89 >More info Control for tissue data Original data GEO bulk
22 Inflorescences ler 0.91 >More info 0.88 >More info Control for tissue data inflorescences Original data GEO bulk
23 KAN1 0.90 >More info 0.89 >More info Control for tissue data shoot apical meristem Original data GEO bulk
24 cortex 0.89 >More info 0.90 >More info Control for tissue data cortex Original data GEO bulk
25 LAS 0.89 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
26 lec1-1 Post-Mature Green Seed 0.90 >More info 0.89 >More info Control for tissue data Original data GEO bulk
27 Flower (stage12) 0.91 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
28 seedling 0.91 >More info 0.88 >More info Control for tissue data seedling Original data GEO bulk
29 Cells whole embryo 0.89 >More info 0.90 >More info Control for tissue data whole embryo Original data
30 HDG4 0.89 >More info 0.90 >More info Control for tissue data shoot apical meristem Original data GEO bulk
31 seed germinating in countinuous light 12 h SL 0.90 >More info 0.89 >More info Control for tissue data seed Original data GEO bulk
32 Bud 0.91 >More info 0.87 >More info Control for tissue data pollen grains and tubes Original data
33 Carpels stage15 0.90 >More info 0.88 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
34 lec1-1 Globular Stage Seed 0.90 >More info 0.88 >More info Control for tissue data Original data GEO bulk
35 ovule 0.90 >More info 0.88 >More info Control for tissue data ovule Original data GEO bulk
36 Pedicels stage15 0.91 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
37 Rosette leaf No12 0.91 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
38 HMG 0.90 >More info 0.88 >More info Control for tissue data shoot apical meristem Original data GEO bulk
39 Apex 5DAS 0.90 >More info 0.87 >More info Control for tissue data Original data GEO bulk
40 Petiol (leaf7) 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
41 Proximalhalf (leaf7) 0.90 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
42 lec1-1 Cotyledon Stage Seed 0.89 >More info 0.88 >More info Control for tissue data Original data GEO bulk
43 Nuclei proembryo 0.88 >More info 0.89 >More info Control for tissue data proembryo Original data
44 WT cotyledons 0.91 >More info 0.86 >More info Control for tissue data cotyledons Original data
45 Anther 0.89 >More info 0.88 >More info Control for tissue data anther Original data
46 siliques 0.90 >More info 0.87 >More info Control for tissue data Original data GEO bulk
47 Stem 1st node 0.89 >More info 0.87 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
48 seed germinating in countinuous light 1 h SL 0.88 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
49 lateral nectary stage 11-12 0.89 >More info 0.87 >More info Control for tissue data lateral nectaries Original data GEO bulk
50 torpedo-meristem 0.88 >More info 0.88 >More info Control for tissue data torpedo embryo meristem tissue Original data GEO bulk
51 flower-buds 0.90 >More info 0.86 >More info Control for tissue data Original data GEO bulk
52 in vivo pollen tube 0.90 >More info 0.86 >More info Control for tissue data pollen tube Original data GEO bulk
53 seed during stratification 48 h S 0.88 >More info 0.88 >More info Control for tissue data seed Original data GEO bulk
54 Seeds stage3 with siliques 0.90 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
55 Expanding leaf 0.90 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
56 phloem sieve cells and companion cells 0.89 >More info 0.87 >More info Control for tissue data phloem Original data GEO bulk
57 Apex 14DAS 0.90 >More info 0.86 >More info Control for tissue data Original data GEO bulk
58 unpollinated pistil 0.90 >More info 0.86 >More info Control for tissue data pistil Original data GEO bulk
59 S17 0.89 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
60 flowers 0.89 >More info 0.87 >More info Control for tissue data Original data GEO bulk
61 Ambient CO2 expanding leaf 0.90 >More info 0.86 >More info Control for tissue data expanding leaf Original data
62 Cotyledons 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
63 Nuclei suspensor 0.88 >More info 0.87 >More info Control for tissue data suspensor Original data
64 Flowers stage15 0.89 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
65 ML (Mature leaves) 35DAS 0.90 >More info 0.85 >More info Control for tissue data Original data GEO bulk
66 silique 0.89 >More info 0.86 >More info Control for tissue data silique Original data GEO bulk
67 heart-stage-root 0.87 >More info 0.88 >More info Control for tissue data Original data GEO bulk
68 AtHB8 0.88 >More info 0.87 >More info Control for tissue data shoot apical meristem Original data GEO bulk
69 root hair 0.87 >More info 0.87 >More info Control for tissue data root hairs Original data GEO bulk
70 Petals stage15 0.88 >More info 0.86 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
71 median nectary stage 14-15 0.87 >More info 0.87 >More info Control for tissue data median nectaries Original data GEO bulk
72 Distal half (leaf7) 0.89 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
73 Stem 2ndinternode 0.89 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
74 EL (leaves 1-2) 14DAS 0.89 >More info 0.85 >More info Control for tissue data Original data GEO bulk
75 B5 +AA -0.90 >More info -0.84 >More info B5 -AA B5 media and treated with AA Original data
76 flower 0.89 >More info 0.85 >More info Control for tissue data flower Original data GEO bulk
77 leaf 0.89 >More info 0.85 >More info Control for tissue data leaf Original data GEO bulk
78 Rosette leaf No2 0.89 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
79 NAA +AA -0.89 >More info -0.85 >More info NAA -AA B5 media supplemented with 4.5 µM NAA and treated with AA Original data
80 globular-basal 0.86 >More info 0.88 >More info Control for tissue data globular embryo basal tissue Original data GEO bulk
81 Ambient CO2 fully expanded leaf 0.89 >More info 0.85 >More info Control for tissue data fully expanded leaf Original data
82 heart-stage-cotyledon 0.87 >More info 0.87 >More info Control for tissue data Original data GEO bulk
83 mature endodermis glcal 0.87 >More info 0.86 >More info Control for tissue data endodermis Original data GEO bulk
84 Seeds stage8 w/o siliques 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
85 Leaf 0.88 >More info 0.85 >More info Control for tissue data leaf Original data GEO bulk
86 differentiating xylem 0.87 >More info 0.86 >More info Control for tissue data xylem Original data GEO bulk
87 Sepals stage15 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
88 lateral nectary stage 14-15 0.87 >More info 0.86 >More info Control for tissue data lateral nectaries Original data GEO bulk
89 Col dryseed 0.88 >More info 0.85 >More info Control for tissue data dry seeds Original data
90 globular-apical 0.86 >More info 0.87 >More info Control for tissue data globular embryo apical tissue Original data GEO bulk
91 Senescing leaf 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
92 seed freshly harvested H 0.88 >More info 0.85 >More info Control for tissue data seed Original data GEO bulk
93 Cauline leaves 0.88 >More info 0.85 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
94 pericycle control 0.86 >More info 0.86 >More info Control for tissue data mock pericycle Original data GEO bulk
95 whole seeds 0.87 >More info 0.85 >More info Control for tissue data Original data GEO bulk
96 micropylar endosperm heart stage 0.86 >More info 0.86 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
97 peripheral endosperm heart stage 0.87 >More info 0.85 >More info Control for tissue data peripheral endosperm captured by LCM Original data GEO bulk
98 QC 0.86 >More info 0.86 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
99 dry seed 0 h 0.88 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
100 whole seeds mature green 0.87 >More info 0.85 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
101 embryo proper 0.86 >More info 0.86 >More info Control for tissue data Original data GEO bulk
102 Stamen stage15 0.87 >More info 0.84 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
103 seed during stratification 12 h S 0.87 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
104 whole seeds heart stage 0.86 >More info 0.85 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
105 seed coat heart stage 0.86 >More info 0.85 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
106 seed during stratification 1 h S 0.87 >More info 0.84 >More info Control for tissue data seed Original data GEO bulk
107 embryo proper heart stage 0.85 >More info 0.86 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
108 peripheral endosperm mature green 0.86 >More info 0.84 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
109 embryo proper mature green 0.86 >More info 0.84 >More info Control for tissue data embryo proper captured by LCM Original data GEO bulk
110 epidermis control 0.85 >More info 0.85 >More info Control for tissue data mock epidermis Original data GEO bulk
111 intact root control 0.85 >More info 0.85 >More info Control for tissue data mock whole root Original data GEO bulk
112 chalazal seed coat 0.86 >More info 0.84 >More info Control for tissue data Original data GEO bulk
113 micropylar endosperm mature green 0.86 >More info 0.84 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
114 seed coat 0.86 >More info 0.84 >More info Control for tissue data Original data GEO bulk
115 torpedo-root 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
116 chalazal endosperm mature green 0.85 >More info 0.84 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
117 chalazal endosperm 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
118 chalazal seed coat mature green 0.86 >More info 0.83 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
119 peripherial endosperm 0.85 >More info 0.84 >More info Control for tissue data Original data GEO bulk
120 Mature pollen 0.86 >More info 0.83 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
121 Emwa1 inoculated psk 3 dpi 0.88 >More info 0.81 >More info Emwa1 inoculated WT 3 dpi Cotyledons Original data GEO bulk
122 pskr1-5 0.88 >More info 0.80 >More info wild type Cotyledons Original data GEO bulk
123 seed coat mature green 0.86 >More info 0.82 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
124 chalazal endosperm heart stage 0.84 >More info 0.83 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
125 in vitro pollen tube 0.84 >More info 0.83 >More info Control for tissue data pollen tube Original data
126 pollen 0.83 >More info 0.83 >More info Control for tissue data pollen grain Original data GEO bulk
127 L17 phyA line -0.84 >More info -0.77 >More info WT seedling Original data GEO bulk
128 seed germinating in countinuous light 24h SL 0.92 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
129 Shoot apex inflorescence (after bolting) 0.91 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
130 Salicylic Acid 3 h -0.87 >More info -0.65 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
131 chalazal seed coat heart stage 0.85 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
132 2h KNO3 Whole root 0.71 >More info 0.43 >More info 2h KCl control Whole root Whole root Original data GEO bulk
133 Starch sheath 2 days MS incubation 0.60 >More info 0.43 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
134 torpedo-apical 0.89 >More info 0.11 >More info Control for tissue data torpedo embryo apical tissue Original data GEO bulk
135 Starch sheath 2 days NAA 0.68 >More info 0.32 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
136 Nuclei whole embryo 0.88 >More info 0.10 >More info Control for tissue data whole embryo Original data
137 Heat shock optimum 0.32 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
138 Starch sheath 5 days MS incubation 0.57 >More info 0.34 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
139 columella control 0.86 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
140 ptpks2 0.56 >More info 0.30 >More info Col-WT leaves Original data GEO bulk
141 sex4-3 0.50 >More info 0.36 >More info Col-WT leaves Original data GEO bulk
142 Col BTH 0.18 >More info 0.67 >More info Col rosettes Original data GEO bulk
143 erf104-ko Flg22 4h -0.63 >More info -0.22 >More info erf104-ko H2O 4h Original data GEO bulk
144 red illumination +lincomycin 0.28 >More info 0.54 >More info red illumination -lincomycin Original data GEO bulk
145 torpedo-cotyledon 0.86 >More info -0.09 >More info Control for tissue data Original data GEO bulk
146 mpk6-ko H2O 4h 0.62 >More info 0.14 >More info Col-0 H2O 4h Original data GEO bulk
147 sfr3 cold -0.63 >More info -0.13 >More info WT-cold aerial tissues Original data GEO bulk
148 WT Atum 1h 0.59 >More info 0.15 >More info WT 0h Leaf tissue Original data GEO bulk
149 polysome mRNA eif3k 0.50 >More info 0.24 >More info polysome mRNA WT aerial part Original data GEO bulk
150 C2H2 ZF TDNA mutant -0.56 >More info -0.18 >More info Col-WT mature pollen Original data GEO bulk
151 met1-3 fourth-selfed generation -0.22 >More info -0.50 >More info Col WT leaf Original data GEO bulk
152 cngc1-3 0.67 >More info 0.03 >More info Col-0 root Original data GEO bulk
153 Paclobutrazol 3 h 0.18 >More info 0.51 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
154 cat2-2; 8h switch to ambient CO2 concentrations; 0.09 >More info 0.60 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
155 cngc19 0.66 >More info 0.02 >More info Col-0 root Original data GEO bulk
156 rdr6-15 0.16 >More info 0.52 >More info Col-0 plant inflorescence Original data
157 3m.KCl -0.56 >More info -0.11 >More info To. KCl 14 day old Roots Original data GEO bulk
158 bZIP TDNA mutant -0.53 >More info -0.14 >More info Col-WT mature pollen Original data GEO bulk
159 HSP90 Reduced RNAi-A3 -0.61 >More info -0.04 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
160 6m.KCl -0.55 >More info -0.10 >More info To. KCl 14 day old Roots Original data GEO bulk
161 Leafminer damaged seedlings 0.09 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
162 bri1-116 -0.09 >More info 0.73 >More info Col seedling Original data GEO bulk
163 6m.KNO3 -0.55 >More info -0.07 >More info To. KNO3 14 day old Roots Original data GEO bulk
164 Laer pretreat GA Flg22 1h -0.09 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
165 atr zebularine -0.50 >More info -0.11 >More info WT zebularine shoot apical meristem Original data
166 siliques AtHb1 control 0.08 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
167 opr3 OPDA 2 h -0.08 >More info 0.65 >More info opr3 0 h Original data GEO bulk
168 2hr transitory KNO3 EPR cell -0.57 >More info 0.01 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
169 CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold -0.51 >More info -0.04 >More info CSP1 immonoprecipitated RNA 35S:HF-RPL18 12h cold (4C) rosettes Original data GEO bulk
170 2hr continuous KNO3 LRCR cell -0.56 >More info 0.02 >More info 2hr KCl control LRCR cell Lateral Root Cap root cells Original data GEO bulk
171 3m.KNO3 -0.51 >More info -0.03 >More info To. KNO3 14 day old Roots Original data GEO bulk
172 erf104-ko H2O 4h 0.59 >More info -0.05 >More info Col-0 H2O 4h Original data GEO bulk
173 Cocultivation 8 hrs leaf 0.51 >More info 0.01 >More info Mock cocultivation 8 hrs leaf Leaf Original data
174 35S::ERF104 H2O 4h 0.59 >More info -0.08 >More info Col-0 H2O 4h Original data GEO bulk
175 2hr continuous KNO3 PeR cell -0.53 >More info 0.03 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
176 Col0-PsmES4326-24hpi -0.11 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
177 WT NAA 1h 0.50 >More info -0.01 >More info WT 0h Leaf tissue Original data GEO bulk
178 WT Atum 2h 0.54 >More info -0.06 >More info WT 0h Leaf tissue Original data GEO bulk
179 CCA1-ox 6am non-polysomal -0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
180 Root wt CLE10 -0.03 >More info 0.50 >More info Root wt CLE25 root tip Original data GEO bulk
181 WT NAA 2h 0.51 >More info -0.12 >More info WT 0h Leaf tissue Original data GEO bulk
182 IAA7mII over-expressor IAA Treated -0.40 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk