4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on pXVE:HA-EDM2-a untreated
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List of experiments correlated with "pXVE:HA-EDM2-a untreated"  Help Download transcriptome of top 30
Score Experiment Correlation from
pXVE:HA-EDM2-a untreated		 Correlation to
pXVE:HA-EDM2-a untreated		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 pXVE:HA-EDM2-a untreated 1.00 >More info 1.00 >More info Col-0 untreated seedlings Original data GEO bulk
2 wnk8-1 untreated 0.92 >More info 0.92 >More info Col-0 untreated seedlings Original data GEO bulk
3 wnk8-2 untreated 0.92 >More info 0.89 >More info Col-0 untreated seedlings Original data GEO bulk
4 wnk8-3 untreated 0.87 >More info 0.87 >More info Col-0 untreated seedlings Original data GEO bulk
5 edm2-2 untreated 0.85 >More info 0.72 >More info Col-0 untreated seedlings Original data GEO bulk
6 Col-0 DCA 48h -0.78 >More info -0.62 >More info Col-0 MOCK 48h Original data GEO bulk
7 MIL4 ox 0.68 >More info 0.63 >More info Col Original data GEO bulk
8 Shoot dark control 24h 0.63 >More info 0.64 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
9 Transgenic LEC2GR Seedling 1h Dex -0.66 >More info -0.58 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
10 WT-Dry -0.71 >More info -0.52 >More info WT-CK dehydration treatment 1h Original data
11 Shoot dark control 7h 0.59 >More info 0.60 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
12 Dark 40min pls UV-AB 5min -0.68 >More info -0.50 >More info Dark 45 min Original data Light treatments
13 mil4 sid2 0.61 >More info 0.57 >More info Col rosettes Original data GEO bulk
14 WT seedlings MV -0.65 >More info -0.50 >More info WT seedlings control Seedlings Original data GEO bulk
15 bri1-116 0.42 >More info 0.73 >More info Col seedling Original data GEO bulk
16 rosette Dark Wounded -0.61 >More info -0.53 >More info rosette Dark Control Original data GEO bulk
17 Col-0 WT HL 3h -0.68 >More info -0.46 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
18 WT+H2O2 -0.64 >More info -0.49 >More info WT H2O2 Original data GEO bulk
19 WT 90-105 min Xanthomonas -0.63 >More info -0.50 >More info WT T0 Original data GEO bulk
20 Shoot submergence 24h 0.54 >More info 0.58 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
21 Light 0.5h steady-state -0.51 >More info -0.61 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
22 WT Red light 1h -0.68 >More info -0.42 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
23 Light 0.5h polysome-bound -0.42 >More info -0.68 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
24 det2 light-dark 0.61 >More info 0.48 >More info det2 light light-dark Original data GEO bulk
25 10min Reillumination IP RNA 0.62 >More info 0.47 >More info 1h Dark IP RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
26 WT 3h -P -0.55 >More info -0.52 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
27 inhibitor A Treated -0.63 >More info -0.44 >More info Negative Control Original data GEO bulk
28 WT flg22 1h -0.66 >More info -0.40 >More info WT 0h Leaf tissue Original data GEO bulk
29 1h +Pi 0.51 >More info 0.54 >More info 1h -Pi root Original data GEO bulk
30 rosette Light Wounded -0.57 >More info -0.48 >More info rosette Light Control Original data GEO bulk
31 max3GR24 (1 uM) -0.60 >More info -0.43 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
32 irradiated leaf (cmt 5d) -0.62 >More info -0.41 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
33 Selenate (root) -0.67 >More info -0.36 >More info Ws (root) Original data GEO bulk
34 Root Selenate -0.67 >More info -0.36 >More info Root control 40 micromolar selenate Root Original data GEO bulk
35 erf104-ko H2O 4h -0.68 >More info -0.35 >More info Col-0 H2O 4h Original data GEO bulk
36 chito-tetramer -0.54 >More info -0.48 >More info Col Mock Original data GEO bulk
37 ref6-1 -0.60 >More info -0.42 >More info Col whole seedling Original data GEO bulk
38 aba1 hypocotyl -0.56 >More info -0.44 >More info Ler hypocotyl hypocotyl Original data GEO bulk
39 35S::ERF104 H2O 4h -0.63 >More info -0.37 >More info Col-0 H2O 4h Original data GEO bulk
40 Wounding Stress3 h (shoot) -0.59 >More info -0.41 >More info Stress mock 3 h (shoot) Original data Stress treatments
41 seedling 1.5h after HZE atm-1 0.49 >More info 0.51 >More info seedling day 1 unirradiated atm-1 1.5h Original data
42 Dark 1day ivd 0.60 >More info 0.39 >More info 0h ivd Original data
43 WT 3H Cold -0.53 >More info -0.46 >More info WT control Original data GEO bulk
44 swn-7 0.76 >More info 0.23 >More info Col whole plant Original data GEO bulk
45 WT-NOCO2 INFECTED -0.51 >More info -0.47 >More info WT-MOCK Original data GEO bulk
46 seedling 24h after Gamma WT -0.52 >More info -0.46 >More info seedling day 2 unirradiated WT 24h Original data
47 gun1gun5 far-red pretreated 0.54 >More info 0.44 >More info WT far-red pretreated Original data GEO bulk
48 Dark 40 min pls UV-A 5 min -0.42 >More info -0.56 >More info Dark 45 min Original data Light treatments
49 chito-octamer -0.47 >More info -0.51 >More info Col Mock Original data GEO bulk
50 NJ15 -0.42 >More info -0.56 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
51 IAA/inhibitor A Treated -0.58 >More info -0.39 >More info IAA Treated Original data GEO bulk
52 Dark 1day hml 0.63 >More info 0.34 >More info 0h hml Original data
53 ex2 flu dark 8hours/30 minute light -0.54 >More info -0.43 >More info col dark 8hours/30 minute light Original data GEO bulk
54 WT flg22 2h -0.56 >More info -0.41 >More info WT 0h Leaf tissue Original data GEO bulk
55 FarRed Light 45min 0.15 >More info 0.82 >More info White Light 45min Original data Light treatments
56 4C 1h -0.25 >More info -0.72 >More info 4C 0h Original data GEO bulk
57 WT hypoxia 0.47 >More info 0.50 >More info WT normoxia whole rosette Original data
58 WT chitooctaose -0.51 >More info -0.45 >More info WT water Original data GEO bulk
59 Protoplast Induced -0.57 >More info -0.39 >More info Uninduced Original data GEO bulk
60 Mutant sav3-2 (WL) -0.34 >More info -0.62 >More info Col-0 (WL) Original data GEO bulk
61 sav3-2 light -0.34 >More info -0.62 >More info Col-0 light seedlings Original data GEO bulk
62 cdpk6-yfp -0.66 >More info -0.29 >More info Kan seedlings Original data GEO bulk
63 Dark 1day wt 0.57 >More info 0.38 >More info 0h wt Original data
64 WT 6H Cold -0.50 >More info -0.45 >More info WT control Original data GEO bulk
65 miR393 flg22 1h -0.62 >More info -0.32 >More info WT 0h Leaf tissue Original data GEO bulk
66 Laer Pst DC3000 12hpi 0.63 >More info 0.31 >More info Laer Control leaf discs Original data GEO bulk
67 Leaf systemic -0.42 >More info -0.52 >More info Leaf control vegetative leaf Original data GEO bulk
68 gai MeJA 1h 0.56 >More info 0.37 >More info Laer MeJA 1h leaf discs Original data GEO bulk
69 TNT-seedlings -0.39 >More info -0.54 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
70 WT 2-4h Xanthomonas -0.61 >More info -0.32 >More info WT T0 Original data GEO bulk
71 dcl1-7 -0.56 >More info -0.36 >More info Ler Original data GEO bulk
72 Leaf wounded -0.59 >More info -0.33 >More info Leaf control vegetative leaf Original data GEO bulk
73 Col-0 INA 48h -0.52 >More info -0.39 >More info Col-0 MOCK 48h Original data GEO bulk
74 WT NAA/flg 1h -0.64 >More info -0.27 >More info WT 0h Leaf tissue Original data GEO bulk
75 downy mildew cotyledons late stage -0.56 >More info -0.35 >More info mock inoculated Cotyledons Original data GEO bulk
76 essp3/brm5 mutant -0.57 >More info -0.34 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
77 Dark 2day wt 0.56 >More info 0.34 >More info 0h wt Original data
78 pnp1-1 3h -P 0.60 >More info 0.29 >More info WT 3h -P No phosphate medium seedlings without roots Original data GEO bulk
79 Day Time Treatment -0.51 >More info -0.36 >More info Day Time Control 1hr white light pulse aerial rosette Original data
80 Dark 3day hml 0.52 >More info 0.34 >More info 0h hml Original data
81 Dark 44min pls RedLigh 1min -0.30 >More info -0.56 >More info Dark 45 min Original data Light treatments
82 WT Nitrate 0.5h -0.54 >More info -0.31 >More info WT untreated Original data GEO bulk
83 clf-28 0.69 >More info 0.16 >More info Col whole plant Original data GEO bulk
84 Laer Flg22+GA 1h -0.59 >More info -0.26 >More info Laer Control leaf discs Original data GEO bulk
85 AFB1 flg22 1h -0.58 >More info -0.27 >More info WT 0h Leaf tissue Original data GEO bulk
86 seedling mSPL13 0.54 >More info 0.30 >More info seedling Col-0 Original data GEO bulk
87 Hydrogen Peroxide 500 uM -0.57 >More info -0.27 >More info Control RB and PER Hydrogen Peroxide Original data
88 Whole root - S 3H -0.53 >More info -0.30 >More info Whole root - S 0H Original data GEO bulk
89 16C 10h -0.32 >More info -0.51 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
90 cat2-2; 8h switch to ambient CO2 concentrations; -0.58 >More info -0.25 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
91 Col-0 INA 6d 0.50 >More info 0.32 >More info Col-0 MOCK 6d Original data GEO bulk
92 Dark 6h hml 0.54 >More info 0.28 >More info 0h hml Original data
93 Dark 6h wt 0.54 >More info 0.28 >More info 0h wt Original data
94 2 hr Hypoxia IP RNA -0.53 >More info -0.28 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
95 Col-0 37C -0.50 >More info -0.31 >More info Col-0 22C Original data GEO bulk
96 Col-0 Flg22 4h -0.61 >More info -0.20 >More info Col-0 H2O 4h Original data GEO bulk
97 arf2 brz 0.50 >More info 0.31 >More info arf2 mock Original data GEO bulk
98 Col-0 RNAi-MBS2/mbs1-1 HL 0h -0.61 >More info -0.19 >More info Col-0 WT HL 0h without high light treatment whole seedlings without root Original data
99 Mutant sav3-2 (SH) -0.27 >More info -0.53 >More info Col-0 (SH) Original data GEO bulk
100 sav3-2 shade -0.27 >More info -0.53 >More info Col-0 shade seedlings Original data GEO bulk
101 flu -0.51 >More info -0.28 >More info WT Col Original data GEO bulk
102 Red/FR Light45min -0.10 >More info -0.69 >More info FarRed Light 45min Original data Light treatments
103 Col in Pi deficiency medium -0.21 >More info -0.58 >More info Col in control medium root Original data GEO bulk
104 Root dark control 7h 0.52 >More info 0.26 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
105 Col-0 mbs1-1 HL 0h -0.53 >More info -0.25 >More info Col-0 WT HL 0h without high light treatment whole seedlings without root Original data
106 FarRed Light 4 h -0.28 >More info -0.50 >More info White Light 4 h Original data Light treatments
107 ein3 eil1 -0.50 >More info -0.27 >More info Col-0 mock Whole seedling Original data GEO bulk
108 Mutant bri1 0.57 >More info 0.20 >More info Ws-2 Original data Comparison of plant hormone related mutant
109 Laer Flg22 1h -0.55 >More info -0.21 >More info Laer Control leaf discs Original data GEO bulk
110 Shoot apex inflorescence (after bolting) 0.11 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
111 tunicamycin 0.53 >More info 0.22 >More info DMF Original data GEO bulk
112 cat2-short-day 2d -0.50 >More info -0.25 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
113 flu over-tAPX -0.50 >More info -0.25 >More info WT Col Original data GEO bulk
114 Roots Cd 0.60 >More info 0.14 >More info Roots control Cd Root Original data GEO bulk
115 P.p 2.5hai -0.52 >More info -0.22 >More info At-Control roots Original data GEO bulk
116 camta1 root water 0.53 >More info 0.20 >More info Col-0 root water root Original data GEO bulk
117 root callus inducing medium 96 h 0.56 >More info 0.16 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
118 opr3 OPDA 0.5 h -0.17 >More info -0.55 >More info opr3 0 h Original data GEO bulk
119 cys-c1 root 0.53 >More info 0.19 >More info Root-WT roots Original data GEO bulk
120 msh1 albino -0.53 >More info -0.19 >More info WT aerial part Original data GEO bulk
121 C2H2 ZF TDNA mutant 0.54 >More info 0.18 >More info Col-WT mature pollen Original data GEO bulk
122 desiccated mature pollen grains 0.19 >More info 0.53 >More info hydrated pollen grains Original data GEO bulk
123 col-5 DC3000-avrRpm 4h -0.54 >More info -0.17 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
124 root callus inducing medium 48 h 0.54 >More info 0.17 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
125 pnp1-1 1wk +P -0.51 >More info -0.20 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
126 ein2-1 +elf18 2h -0.50 >More info -0.21 >More info WT +elf18 2h elf18 Original data GEO bulk
127 IAA7mII over-expressor IAA Treated 0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
128 FHY3p dark+DEX 0.57 >More info 0.12 >More info FHY3p dark+mock Original data GEO bulk
129 WT Col-0 Bgh inoculated -0.51 >More info -0.18 >More info WT Col-0 Un-inoculated Original data GEO bulk
130 Pseudomonas 0.19 >More info 0.50 >More info Control pseudomonas treated whole seedling Original data GEO bulk
131 WT zebularine -0.53 >More info -0.15 >More info WT mock shoot apical meristem Original data
132 LTN008-2 aza-dc -0.54 >More info -0.14 >More info LTN012-2 Mock Original data
133 csn5 (csn5a-2 csn5b) light -0.52 >More info -0.16 >More info WT light Original data GEO bulk
134 protoplasts T2 [flg22] -0.51 >More info -0.16 >More info protoplasts T2 [CPK] mesophyll protoplasts Original data GEO bulk
135 GR::bZIP1 +CHX +N +DEX 0.55 >More info 0.12 >More info GR::bZIP1 empty vector control +CHX +N +DEX 1 µM DEX in Ethanol Original data
136 Col BTH -0.00 >More info 0.67 >More info Col rosettes Original data GEO bulk
137 WT mitomycin C -0.53 >More info -0.13 >More info WT mock shoot apical meristem Original data
138 3x(m) -0.10 >More info -0.56 >More info 2x two week old seedlings Original data
139 mpk6-ko H2O 4h -0.53 >More info -0.12 >More info Col-0 H2O 4h Original data GEO bulk
140 protoplasts T1 [flg22] -0.55 >More info -0.10 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
141 DFPM -0.54 >More info -0.11 >More info control Original data GEO bulk
142 MPK6 ox Shoot Hypoxia -0.52 >More info -0.13 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
143 coi1-16 ein2 sid2 ozone -0.50 >More info -0.14 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
144 ein2-1 9 hpi A. brassicicola -0.51 >More info -0.12 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
145 WT 1wk -P -0.55 >More info -0.07 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
146 ataf1-1 mutant Col-0 Bgh inoculated -0.53 >More info -0.09 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
147 Mutant siz1-3 (Drought) -0.54 >More info -0.07 >More info Col-0 (Drought) Original data GEO bulk
148 siz1-3 drought -0.54 >More info -0.07 >More info Col-0 drought Original data GEO bulk
149 tga1 tga4 2h KNO3 -0.07 >More info -0.53 >More info Col 0 2h KNO3 5 mM KNO3 root Original data GEO bulk
150 Red Light 45min -0.03 >More info 0.63 >More info White Light 45min Original data Light treatments
151 Laer Flg22+GA 2h -0.51 >More info -0.07 >More info Laer Control leaf discs Original data GEO bulk
152 iron minus 24h 0.06 >More info 0.50 >More info iron +24h root Original data GEO bulk
153 CCA1-ox 6am non-polysomal 0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
154 HairpinZ 4 h (leaf) -0.51 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
155 seed germinating in countinuous light 24h SL -0.14 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
156 phyABDE Rc50 -0.02 >More info -0.50 >More info phyABDE Dark red light whole seedling Original data GEO bulk
157 Shoot submergence 7h 0.51 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
158 Dark 2day ivd 0.52 >More info -0.01 >More info 0h ivd Original data
159 Laer pretreat GA Flg22 1h -0.22 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
160 col-5 hrpA 2h -0.52 >More info 0.04 >More info col-5 MgCl2 2h Whole leaf Original data GEO bulk
161 Leafminer damaged seedlings -0.12 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
162 siliques AtHb1 control -0.11 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
163 dde2-2 9 hpi A. brassicicola -0.50 >More info 0.14 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
164 Heat shock optimum -0.30 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
165 Col0-PsmES4326-24hpi -0.27 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
166 JA 24h 0.50 >More info -0.24 >More info EtOH 24h 24hr Original data GEO bulk