4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Dark 4 h pls UV-A 5 min
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List of experiments correlated with "Dark 4 h pls UV-A 5 min "  Help Download transcriptome of top 30
Score Experiment Correlation from
Dark 4 h pls UV-A 5 min 		Correlation to
Dark 4 h pls UV-A 5 min 		Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Dark 4 h pls UV-A 5 min 1.00 >More info 1.00 >More info Dark 4 h Original data Light treatments
2 Dark 4 h pls RedLight 1min 0.89 >More info 0.96 >More info Dark 4 h Original data Light treatments
3 Dark 4 h pls UV-AB 5min 0.89 >More info 0.80 >More info Dark 4 h Original data Light treatments
4 Light 4h steady-state 0.78 >More info 0.75 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
5 Light 4h polysome-bound 0.79 >More info 0.72 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
6 WT Red light 18h 0.79 >More info 0.71 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
7 bri1-116 0.64 >More info 0.73 >More info Col seedling Original data GEO bulk
8 WT(Ler) Rc50 0.74 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
9 WT(Ler) Rc15 0.73 >More info 0.60 >More info WT(Ler) Dark Original data GEO bulk
10 Shoot dark control 24h -0.68 >More info -0.64 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
11 aerial organ callus inducing medium 96 h -0.74 >More info -0.57 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
12 pif4pif5 mut dark 0.69 >More info 0.61 >More info WT dark Original data GEO bulk
13 Shoot submergence 24h -0.69 >More info -0.61 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
14 WT Rc50 0.72 >More info 0.57 >More info WT Dark red light whole seedling Original data GEO bulk
15 WT light 0.69 >More info 0.60 >More info WT dark Original data GEO bulk
16 WT Seedling BL 0.74 >More info 0.53 >More info WT Seedling Dark Original data GEO bulk
17 pif4pif5 mut 1h FR 0.75 >More info 0.49 >More info WT 1h FR Original data GEO bulk
18 col-5 hrpA 12h -0.65 >More info -0.57 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
19 Shoot dark control 7h -0.60 >More info -0.61 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
20 Col-0 C2H4 24h -0.69 >More info -0.52 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
21 35SpBVR3 -0.64 >More info -0.56 >More info WT Original data GEO bulk
22 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.64 >More info 0.56 >More info 2d dark-grown WT seedling Original data GEO bulk
23 phyAphyB Dark -0.65 >More info -0.51 >More info phyB Dark Original data GEO bulk
24 ABA control -0.66 >More info -0.49 >More info No ABA control Original data GEO bulk
25 Col-0 +lincomycin -0.64 >More info -0.51 >More info Col-0 -lincomycin Original data GEO bulk
26 aerial organ callus inducing medium 48 h -0.66 >More info -0.48 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
27 cop1 Seedling Dark 0.70 >More info 0.44 >More info WT Seedling Dark Original data GEO bulk
28 Col-0 low oxygen -0.67 >More info -0.46 >More info Col-0 Original data GEO bulk
29 phyB Dark 0.64 >More info 0.48 >More info WT(Ler) Dark Original data GEO bulk
30 col-5 DC3000 12h -0.57 >More info -0.55 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
31 Red Light 4 h -0.45 >More info -0.67 >More info White Light 4 h Original data Light treatments
32 etiolated cop1BBX22-GFPox 0.58 >More info 0.52 >More info etiolated Col-0 whole seedlings Original data GEO bulk
33 WT Red light 1h 0.60 >More info 0.50 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
34 Dark 3day ivd -0.68 >More info -0.41 >More info 0h ivd Original data
35 DC3000 7h -0.59 >More info -0.50 >More info Mock 7h DC3000 Original data GEO bulk
36 phyABDE Rc50 0.61 >More info 0.48 >More info phyABDE Dark red light whole seedling Original data GEO bulk
37 E.coli TUV86 2 fliC 7h -0.55 >More info -0.52 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
38 phr1 Shoot-Pi 0.62 >More info 0.45 >More info WT Root-Pi shoots Original data GEO bulk
39 Dark 3day wt -0.65 >More info -0.42 >More info 0h wt Original data
40 Dark 2day wt -0.64 >More info -0.43 >More info 0h wt Original data
41 CabpBVR2 -0.60 >More info -0.47 >More info WT Original data GEO bulk
42 aerial organ callus inducing medium 24h -0.59 >More info -0.46 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
43 pif4pif5 mut 24h FR 0.46 >More info 0.59 >More info WT 24h FR Original data GEO bulk
44 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.58 >More info 0.47 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
45 low CO2 + dark -0.47 >More info -0.57 >More info normal CO2 + light Original data GEO bulk
46 gun1-1 +lincomycin 0.45 >More info 0.59 >More info Col-0 +lincomycin Original data GEO bulk
47 csn5 (csn5a-2 csn5b) dark 0.66 >More info 0.37 >More info WT dark Original data GEO bulk
48 aerial organ callus inducing medium 12 h -0.58 >More info -0.45 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
49 Shoot apex inflorescence (after bolting) 0.38 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
50 oas-a1.1 root 0.43 >More info 0.60 >More info WT-Untreated Root Original data GEO bulk
51 afb3-1 2h KNO3 0.54 >More info 0.48 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
52 Dark 3day hml -0.64 >More info -0.38 >More info 0h hml Original data
53 erf104-ko H2O 4h 0.61 >More info 0.41 >More info Col-0 H2O 4h Original data GEO bulk
54 Dark 44min pls RedLigh 1min 0.47 >More info 0.55 >More info Dark 45 min Original data Light treatments
55 2hr continuous KNO3 ECR cell -0.47 >More info -0.55 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
56 clf-28 swn-7 -0.64 >More info -0.37 >More info Col whole plant Original data GEO bulk
57 hrpA 7h -0.53 >More info -0.48 >More info Mock 7h hrpA Original data GEO bulk
58 Dark 1day ivd -0.64 >More info -0.36 >More info 0h ivd Original data
59 Dark 1day wt -0.63 >More info -0.37 >More info 0h wt Original data
60 E.coli 0157 H7 7h -0.49 >More info -0.51 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
61 Dark 40min pls UV-AB 5min 0.58 >More info 0.41 >More info Dark 45 min Original data Light treatments
62 erf104-ko Flg22 4h -0.49 >More info -0.50 >More info erf104-ko H2O 4h Original data GEO bulk
63 Day Time Treatment 0.54 >More info 0.44 >More info Day Time Control 1hr white light pulse aerial rosette Original data
64 csn4-1 mutant 0.62 >More info 0.36 >More info WT dark Original data GEO bulk
65 gpa1 -ABA LF -0.56 >More info -0.42 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
66 Col-0 norflurazon -0.54 >More info -0.44 >More info Col-0 control Original data GEO bulk
67 phr1 phl1 Root-Pi -0.58 >More info -0.40 >More info WT Shoot+Pi roots Original data GEO bulk
68 csn3-1 dark 0.60 >More info 0.38 >More info WT dark Original data GEO bulk
69 WT hypoxia -0.53 >More info -0.44 >More info WT normoxia whole rosette Original data
70 petiole in FRD -0.56 >More info -0.41 >More info petiole in WL petioles Original data GEO bulk
71 Dark 2day hml -0.61 >More info -0.36 >More info 0h hml Original data
72 Dark 6h ivd -0.55 >More info -0.42 >More info 0h ivd Original data
73 seedling 1.5h after HZE atm-1 -0.45 >More info -0.52 >More info seedling day 1 unirradiated atm-1 1.5h Original data
74 Dark 1day hml -0.60 >More info -0.36 >More info 0h hml Original data
75 pad4-PsmES4326-24hpi 0.52 >More info 0.44 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
76 axr2-BR 0.62 >More info 0.34 >More info BR BR dark-grown seedlings Original data GEO bulk
77 2d dark-grown WT(Col-0)/1 hr red light 0.53 >More info 0.42 >More info 2d dark-grown WT seedling Original data GEO bulk
78 eto1-4 -0.63 >More info -0.32 >More info Col-0 whole seedling Original data GEO bulk
79 det2 light-dark -0.60 >More info -0.34 >More info det2 light light-dark Original data GEO bulk
80 gul2-1 bri1-5 mutant -0.52 >More info -0.42 >More info WT 7 day-old whole seedlings Original data
81 Laer treat paclobutrazol (PAC) -0.57 >More info -0.37 >More info Laer Control leaf discs Original data GEO bulk
82 Dark 40 min pls UV-A 5 min 0.44 >More info 0.50 >More info Dark 45 min Original data Light treatments
83 pif3 Dark 1h 0.53 >More info 0.39 >More info WT Dark 1h etiolated seedling Original data GEO bulk
84 Laer Flg22 2h -0.52 >More info -0.40 >More info Laer Control leaf discs Original data GEO bulk
85 seed germinating in countinuous light 24h SL 0.24 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
86 GA4 3 h (ga1 seed) -0.58 >More info -0.33 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
87 Seedling KUA1-IOX est -0.41 >More info -0.50 >More info Seedling KUA1-IOX mock Original data
88 atmyc2 cop1 Seedling Dark 0.64 >More info 0.26 >More info WT Seedling Dark Original data GEO bulk
89 petiole in D -0.51 >More info -0.39 >More info petiole in WL petioles Original data GEO bulk
90 Laer pretreat GA+JA Flg22 2h -0.58 >More info -0.32 >More info Laer pretreat water control leaf discs Original data GEO bulk
91 agb1 -ABA LF -0.37 >More info -0.52 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
92 Laer pretreat GA+JA Flg22 0h -0.58 >More info -0.31 >More info Laer pretreat water control leaf discs Original data GEO bulk
93 Cor 10h -0.57 >More info -0.32 >More info Mock 10h Cor Original data GEO bulk
94 eto1-4 +393 0.57 >More info 0.32 >More info eto1-4 whole seedling Original data GEO bulk
95 Laer pretreat GA Flg22 0h -0.55 >More info -0.33 >More info Laer pretreat water control leaf discs Original data GEO bulk
96 slr-1 0h NAA -0.56 >More info -0.31 >More info Col-0 0h NAA Original data GEO bulk
97 IPT8 induced 24h 0.62 >More info 0.25 >More info Control 24h 24 hours primary root tip (5 mm) Original data GEO bulk
98 estradiol induced LEC1 -0.50 >More info -0.35 >More info control Original data GEO bulk
99 Laer pretreat GA+JA Flg22 1h -0.58 >More info -0.27 >More info Laer pretreat water control leaf discs Original data GEO bulk
100 Estradiol4 days -0.50 >More info -0.35 >More info Col Original data GEO bulk
101 Col whole leaf 3dpi -0.24 >More info -0.61 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
102 arf2 mock -0.51 >More info -0.33 >More info Col mock Original data GEO bulk
103 mpk6-ko H2O 4h 0.54 >More info 0.30 >More info Col-0 H2O 4h Original data GEO bulk
104 Mutant arf2 (etiol) -0.51 >More info -0.33 >More info Col (etiol) Original data GEO bulk
105 35S::ERF104 Flg22 4h -0.34 >More info -0.50 >More info 35S::ERF104 H2O 4h Original data GEO bulk
106 Col 3d -0.60 >More info -0.24 >More info Col CA Leaves Original data
107 ADD3 0.51 >More info 0.32 >More info WT aerial part Original data GEO bulk
108 WT cotyledons 0.54 >More info 0.29 >More info Control for tissue data cotyledons Original data
109 miR393 0h 0.56 >More info 0.25 >More info WT 0h Leaf tissue Original data GEO bulk
110 Laer pretreat GA Flg22 2h -0.54 >More info -0.26 >More info Laer pretreat water control leaf discs Original data GEO bulk
111 EL (leaves 1-2) 14DAS 0.50 >More info 0.30 >More info Control for tissue data Original data GEO bulk
112 Col-0 DCA 6d -0.28 >More info -0.52 >More info Col-0 MOCK 6d Original data GEO bulk
113 Truncated AC2 T2 0.54 >More info 0.25 >More info AC2 and AC2del control T2 two days post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
114 wrky33 Bc inoculation 14h -0.51 >More info -0.27 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
115 gai Control -0.57 >More info -0.20 >More info Laer Control leaf discs Original data GEO bulk
116 embryo ABA -0.56 >More info -0.21 >More info embryo-control ABA embryo Original data GEO bulk
117 WT (Col-0) inflorescence drought day 10 -0.51 >More info -0.25 >More info WT (Col-0) inflorescence well-watered day 10 Unopen flower buds Original data GEO bulk
118 ML (Mature leaves) 35DAS 0.50 >More info 0.26 >More info Control for tissue data Original data GEO bulk
119 embryo paclobutrazol -0.55 >More info -0.21 >More info embryo-control paclobutrazol embryo Original data GEO bulk
120 eto1-4 +370 0.57 >More info 0.19 >More info eto1-4 whole seedling Original data GEO bulk
121 WT roots - Fe -0.26 >More info -0.50 >More info WT roots + Fe Roots Original data GEO bulk
122 Col-0 Root 100 mM ATP 30 min 0.54 >More info 0.21 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
123 Expanding leaf 0.50 >More info 0.25 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
124 GST 4 h (leaf) -0.25 >More info -0.50 >More info Mock 4 h (leaf) Original data Elicitor treatments
125 vte1-1 1d vernalization -0.55 >More info -0.19 >More info WT 1d vernalization Original data GEO bulk
126 atmospheric CO2 low Mg shoot -0.55 >More info -0.19 >More info atmospheric CO2 normal Mg shoot Shoot Original data
127 FarRed Light 45min -0.24 >More info -0.50 >More info White Light 45min Original data Light treatments
128 rcf1-1 cold 24h -0.22 >More info -0.51 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
129 Apex 5DAS 0.50 >More info 0.22 >More info Control for tissue data Original data GEO bulk
130 35S::ERF104 H2O 4h 0.54 >More info 0.18 >More info Col-0 H2O 4h Original data GEO bulk
131 Botrytis cinerea 48h -0.53 >More info -0.19 >More info control 48h Original data GEO bulk
132 phyABCDE Rc50 0.52 >More info 0.20 >More info phyABCDE Dark red light whole seedling Original data GEO bulk
133 TAMM27 roots 2hr KCl control 0.57 >More info 0.15 >More info Col0 roots 2hr KCl control root Original data GEO bulk
134 CT101 ozone -0.51 >More info -0.20 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
135 Differentiation 48h -0.53 >More info -0.16 >More info Differentiation 0h leaves Original data
136 Col leaf scrape 5 dpi -0.60 >More info -0.09 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
137 0.2µM SMX 0.62 >More info 0.07 >More info control Whole seedling Original data GEO bulk
138 WT Atum 1h 0.50 >More info 0.17 >More info WT 0h Leaf tissue Original data GEO bulk
139 Dark 2day ivd -0.66 >More info -0.01 >More info 0h ivd Original data
140 ahg3-1 -0.64 >More info -0.03 >More info ABA control Original data GEO bulk
141 ahg1-1 -0.65 >More info -0.01 >More info ABA control Original data GEO bulk
142 Differentiation 36h -0.51 >More info -0.15 >More info Differentiation 0h leaves Original data
143 sex1-3 -0.05 >More info -0.60 >More info Col-WT leaves Original data GEO bulk
144 Shoot submergence 7h -0.64 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
145 Te 3d -0.50 >More info -0.14 >More info Te CA Leaves Original data
146 lec2-1 12 DAF Seed 0.57 >More info 0.04 >More info WT (WS) 12 DAF Seed developing seeds dissected from sliques Original data
147 etiolated cop1 0.57 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
148 short 17-degree- -0.02 >More info 0.62 >More info control short Original data GEO bulk
149 Heat shock optimum -0.05 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
150 arr10 arr12 tZ -0.50 >More info -0.09 >More info tZ trans-zeatin roots Original data GEO bulk
151 Col light-dark EtOH -0.52 >More info -0.06 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
152 atr zebularine -0.54 >More info -0.03 >More info WT zebularine shoot apical meristem Original data
153 Red/FR Light45min -0.05 >More info 0.62 >More info FarRed Light 45min Original data Light treatments
154 IAA7mII over-expressor IAA Treated -0.12 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
155 light 0.74 >More info -0.18 >More info dark light seedling Original data GEO bulk
156 IAA 1h -0.51 >More info -0.04 >More info control 1h root Original data GEO bulk
157 elevated CO2 low Mg shoot 0.51 >More info 0.04 >More info atmospheric CO2 low Mg shoot Shoot Original data
158 siliques AtHb1 control 0.02 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
159 Col 8h -0.52 >More info 0.00 >More info Col CA Leaves Original data
160 sfr3 cold -0.50 >More info 0.00 >More info WT-cold aerial tissues Original data GEO bulk
161 CCA1-ox 6am non-polysomal -0.04 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
162 red illumination +lincomycin -0.53 >More info 0.13 >More info red illumination -lincomycin Original data GEO bulk
163 Col BTH -0.30 >More info 0.67 >More info Col rosettes Original data GEO bulk
164 CCA14 dark early 0.20 >More info -0.52 >More info Col dark early Original data GEO bulk
165 Leafminer damaged seedlings -0.27 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
166 Col-0 V. longisporum-inoculated 48 hpi 0.35 >More info -0.50 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
167 Laer pretreat GA Flg22 1h -0.57 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
168 Col0-PsmES4326-24hpi -0.53 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk