4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root longitudinal zone-3 pH 4.6
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List of experiments correlated with "root longitudinal zone-3 pH 4.6"  Help Download transcriptome of top 30
Score Experiment Correlation from
root longitudinal zone-3 pH 4.6		 Correlation to
root longitudinal zone-3 pH 4.6		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root longitudinal zone-3 pH 4.6 1.00 >More info 1.00 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
2 root epidermis and lateral root cap pH4.6 0.69 >More info 0.66 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
3 Whole root - low pH 24H 0.72 >More info 0.62 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
4 root longitudinal zone-4 low sulfur -0.77 >More info -0.55 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
5 Whole root - low pH 12H 0.76 >More info 0.55 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
6 root cells endodermis 140mM NaCl 3 hours 0.71 >More info 0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
7 root stele pH4.6 0.76 >More info 0.51 >More info root stele pH5.7 Original data GEO bulk
8 root endodermis and quiescent center pH4.6 0.65 >More info 0.61 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
9 Ibuprofen 3 h 0.65 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
10 whole roots -Fe 72 hour 0.76 >More info 0.47 >More info whole roots standard Original data GEO bulk
11 Fe starvation 72 h 0.76 >More info 0.47 >More info Control Original data GEO bulk
12 BR 0.81 >More info 0.42 >More info WT-mock BR dark-grown seedlings Original data GEO bulk
13 root cells endodermis 140mM NaCl 8 hours 0.71 >More info 0.47 >More info root cells endodermis standard 1 hour root cells endodermis Original data
14 whole roots -Fe 48 hour 0.75 >More info 0.43 >More info whole roots standard Original data GEO bulk
15 WT (Ler) CK200 -0.59 >More info -0.58 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
16 TNT-seedlings 0.64 >More info 0.52 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
17 root cells stele 140mM NaCl 8 hours 0.69 >More info 0.46 >More info root cells stele standard 1 hour root cells stele Original data
18 root cells endodermis 140mM NaCl 20 hours 0.69 >More info 0.46 >More info root cells endodermis standard 1 hour root cells endodermis Original data
19 MG132 3 h 0.65 >More info 0.50 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
20 abi1 hypocotyl -0.54 >More info -0.58 >More info Ler hypocotyl hypocotyl Original data GEO bulk
21 root cells stele 140mM NaCl 3 hours 0.68 >More info 0.44 >More info root cells stele standard 1 hour root cells stele Original data
22 6-trichlorophenoxyacetic acid 3 h 0.73 >More info 0.37 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
23 root longitudinal zone-2 -Fe 0.64 >More info 0.46 >More info root longitudinal zone-2 standard Original data GEO bulk
24 root cells endodermis 140mM NaCl 48 hours 0.65 >More info 0.44 >More info root cells endodermis standard 1 hour root cells endodermis Original data
25 root cells stele -Fe -0.58 >More info -0.51 >More info whole roots standard Original data GEO bulk
26 Fenclorim 24hr 0.73 >More info 0.35 >More info Acetone 24hr root Original data GEO bulk
27 aux1 mutant roots ethylene 0.57 >More info 0.51 >More info roots air Original data GEO bulk
28 root cortex pH4.6 0.58 >More info 0.50 >More info root cortex pH5.7 Original data GEO bulk
29 root epidermis and lateral root cap -S 0.68 >More info 0.40 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
30 epidermis auxin 0.61 >More info 0.46 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
31 Propiconazole 3 h 0.64 >More info 0.42 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
32 IAA7mII over-expressor IAA Treated 0.37 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
33 OXUPB1-2 meristematic zone 0.63 >More info 0.41 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
34 upb1-1 elongation zone -0.60 >More info -0.43 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
35 root cells cortex 140mM NaCl 8 hours 0.64 >More info 0.39 >More info root cells cortex standard 1 hour root cells cortex Original data
36 root cells epidermis 140mM NaCl 3 hours 0.56 >More info 0.46 >More info root cells epidermis standard 1 hour root cells epidermis Original data
37 root cells epidermis 140mM NaCl 8 hours 0.57 >More info 0.43 >More info root cells epidermis standard 1 hour root cells epidermis Original data
38 6h volatiles Sp. HRO-C48 -0.51 >More info -0.48 >More info 6h untreated whole seedling Original data GEO bulk
39 root longitudinal zone-3 low sulfur 0.59 >More info 0.40 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
40 ein2 mutant roots IAA 0.67 >More info 0.32 >More info roots ethylene Original data GEO bulk
41 root stele -S 0.71 >More info 0.28 >More info root stele pH5.7 Original data GEO bulk
42 root longitudinal zone-4 -Fe 0.73 >More info 0.25 >More info root longitudinal zone-4 standard Original data GEO bulk
43 Mutant axr3-1 (IAA) 0.52 >More info 0.45 >More info Col (IAA) Original data GEO bulk
44 gabaculin 0.62 >More info 0.35 >More info WT Col-0 seedling Original data GEO bulk
45 plant (Col-0) 4h phytoprostane A1 0.61 >More info 0.36 >More info plant (tga2-5-6) 4h control Original data GEO bulk
46 Mutant axr3-1 0.56 >More info 0.40 >More info Col Original data GEO bulk
47 Whole root - S 24H 0.57 >More info 0.39 >More info Whole root - S 0H Original data GEO bulk
48 root longitudinal zone-4 NaCl 0.75 >More info 0.21 >More info root longitudinal zone-4 Original data GEO bulk
49 Tsu -Fe 24h Roots 0.67 >More info 0.29 >More info Tsu +Fe 24h Roots Original data GEO bulk
50 Tsu-1 -Fe 24h 0.67 >More info 0.29 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
51 Col BTH 0.29 >More info 0.67 >More info Col rosettes Original data GEO bulk
52 root cells epidermis 140mM NaCl 48 hours 0.54 >More info 0.40 >More info root cells epidermis standard 1 hour root cells epidermis Original data
53 Fenclorim 4hr 0.66 >More info 0.28 >More info Acetone 4hr root Original data GEO bulk
54 Whole root - S 48H 0.51 >More info 0.43 >More info Whole root - S 0H Original data GEO bulk
55 CCA14 dark late 0.57 >More info 0.37 >More info Col dark late Original data GEO bulk
56 root cells epidermis 140mM NaCl 20 hours 0.59 >More info 0.35 >More info root cells epidermis standard 1 hour root cells epidermis Original data
57 root cells endodermis 140mM NaCl 32 hours 0.61 >More info 0.33 >More info root cells endodermis standard 1 hour root cells endodermis Original data
58 root cells stele 140mM NaCl 32 hours 0.59 >More info 0.34 >More info root cells stele standard 1 hour root cells stele Original data
59 root cells stele 140mM NaCl 48 hours 0.60 >More info 0.33 >More info root cells stele standard 1 hour root cells stele Original data
60 root cells stele 140mM NaCl 1 hour 0.61 >More info 0.32 >More info root cells stele standard 1 hour root cells stele Original data
61 line J1551-5 days control + 2 days salt s 0.64 >More info 0.28 >More info line J1551-7 days-control Original data
62 siliques AtHb1 control 0.40 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
63 root cells cortex 140mM NaCl 3 hours 0.57 >More info 0.35 >More info root cells cortex standard 1 hour root cells cortex Original data
64 Root -Cs 0.53 >More info 0.38 >More info Control-root Original data GEO bulk
65 24h +Pi -0.50 >More info -0.40 >More info 24h -Pi root Original data GEO bulk
66 5-Triiodobenzoic acid3 h 0.57 >More info 0.33 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
67 root cells cortex 140mM NaCl 32 hours 0.55 >More info 0.34 >More info root cells cortex standard 1 hour root cells cortex Original data
68 TiO2 germinant -0.62 >More info -0.27 >More info Millipore Water germinant TiO2 seedling Original data
69 SA 0.55 >More info 0.33 >More info WT mock Whole seedling Original data GEO bulk
70 atmospheric CO2 low Mg root -0.58 >More info -0.29 >More info atmospheric CO2 normal Mg root Root Original data
71 root cells cortex 140mM NaCl 1 hour 0.54 >More info 0.32 >More info root cells cortex standard 1 hour root cells cortex Original data
72 Chemically 0.29 >More info 0.57 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
73 root longitudinal zone-4 pH 4.6 0.56 >More info 0.29 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
74 ani1 T16 -0.59 >More info -0.26 >More info WT T16 root tissue Original data GEO bulk
75 PNO8 3 h 0.57 >More info 0.28 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
76 root cells endodermis 140mM NaCl 1 hour 0.58 >More info 0.26 >More info root cells endodermis standard 1 hour root cells endodermis Original data
77 naxillin 3h -0.57 >More info -0.27 >More info before treatment naxillin root Original data GEO bulk
78 Col -Fe 0.61 >More info 0.22 >More info Col-es root Original data GEO bulk
79 P-chlorophenoxy- isobutyric acid 3 h 0.59 >More info 0.24 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
80 Col-0 0h NAA 0.63 >More info 0.19 >More info Col-0 6h MOCK Original data GEO bulk
81 gun1-1 +lincomycin -0.52 >More info -0.30 >More info Col-0 +lincomycin Original data GEO bulk
82 Laer pretreat GA Flg22 1h 0.11 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
83 Col0-PsmES4326-24hpi 0.20 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
84 Naphthyl- phthalamic acid 3 h 0.51 >More info 0.29 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
85 elevated CO2 normal Mg root -0.65 >More info -0.15 >More info atmospheric CO2 normal Mg root Root Original data
86 root protoplasts 40 mM NaCl -0.30 >More info -0.50 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
87 Whole root - S 12H 0.58 >More info 0.22 >More info Whole root - S 0H Original data GEO bulk
88 root cells stele 140mM NaCl 20 hours 0.51 >More info 0.28 >More info root cells stele standard 1 hour root cells stele Original data
89 seedling 6h after HZE atm-1 -0.66 >More info -0.13 >More info seedling day 1 unirradiated atm-1 6h Original data
90 stele auxin 0.50 >More info 0.29 >More info stele control 5 uM indole-3-acetic acid stele Original data GEO bulk
91 bbx24 in Simulated Shade -0.28 >More info -0.51 >More info WT in simulated shade shade seedling Original data
92 gapcp1gapcp2 0.50 >More info 0.28 >More info WT Original data GEO bulk
93 rid4 IBA 0.60 >More info 0.18 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
94 CMP 24hr 0.63 >More info 0.15 >More info Acetone 24hr root Original data GEO bulk
95 SA Treated 0.70 >More info 0.08 >More info Water Original data GEO bulk
96 whole roots -Fe 24hour 0.58 >More info 0.19 >More info whole roots standard Original data GEO bulk
97 root cells cortex 140mM NaCl 48 hours 0.52 >More info 0.25 >More info root cells cortex standard 1 hour root cells cortex Original data
98 Fe starvation 24 h 0.58 >More info 0.19 >More info Control Original data GEO bulk
99 mtf1-1 0.67 >More info 0.09 >More info Col0 root Original data
100 rhd2 0.58 >More info 0.18 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
101 QC pSCR 0h BL 0.52 >More info 0.24 >More info WR 35S 0h BL brassinosteroid root Original data
102 piffq FR 3h -0.62 >More info -0.13 >More info WT FR 3h whole seedling Original data GEO bulk
103 2hr continuous KCl and MSX control PeR cell -0.15 >More info -0.60 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
104 indRKD4ox 0.66 >More info 0.08 >More info Control (35S-GVG) seedlings Original data GEO bulk
105 PAHs stress 0.54 >More info 0.20 >More info exp control phenanthrene whole plants Original data GEO bulk
106 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
107 ga1-3 SCL3OE 0.51 >More info 0.22 >More info ga1-3 whole root Original data
108 Mutant iaa17-6 (IAA) 0.56 >More info 0.16 >More info Col (IAA) Original data GEO bulk
109 cngc19 0.52 >More info 0.20 >More info Col-0 root Original data GEO bulk
110 sta1 0.55 >More info 0.14 >More info WT Original data GEO bulk
111 Cocultivation 8 hrs root 0.52 >More info 0.17 >More info Mock cocultivation 8 hrs root Root Original data
112 atmospheric CO2 high Mg root -0.57 >More info -0.12 >More info atmospheric CO2 normal Mg root Root Original data
113 Mutant nph4-1_arf19-1 0.62 >More info 0.06 >More info Col Original data GEO bulk
114 C58 6dpi -0.52 >More info -0.15 >More info Reference 6dpi wounded inflorescence stalk segments Original data GEO bulk
115 Mature callus 0.53 >More info 0.14 >More info Young callus hypocotyls Original data GEO bulk
116 plant (tga2-5-6) 4h phytoprostane A1 0.55 >More info 0.12 >More info plant (tga2-5-6) 4h control Original data GEO bulk
117 dsr1 0.53 >More info 0.13 >More info WT mock Whole seedling Original data GEO bulk
118 tor mutant glucose 0.52 >More info 0.14 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
119 slr-1 6h NAA 0.66 >More info 0.00 >More info Col-0 6h NAA Original data GEO bulk
120 Aerobic e1 ate2 -0.57 >More info -0.09 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
121 Shoot apex inflorescence (after bolting) -0.00 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
122 pvip1 pvip2 0.56 >More info 0.08 >More info Col-0 whole rosettes Original data GEO bulk
123 Ler hypocotyl 0.53 >More info 0.10 >More info wt hypocotyl hypocotyl Original data GEO bulk
124 mkk1/mkk2 control rep 0.50 >More info 0.13 >More info Col-0 Time 0 rep Original data GEO bulk
125 seedling -S Exp 0.68 >More info -0.05 >More info seedling FN Exp seedling Original data
126 Leafminer damaged seedlings 0.06 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
127 SAM SE 35S:AGL15 -0.57 >More info -0.05 >More info SAM SE Col Original data GEO bulk
128 pif5 high R/FR -0.60 >More info -0.02 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
129 Methyl Jasmonate 1 h -0.11 >More info -0.51 >More info Mock 1 h Original data Basic hormone treatment of seedlings
130 gun1-9 norflurazon -0.64 >More info 0.03 >More info gun1-9 control Original data GEO bulk
131 gul2-1 bri1-5 mutant -0.51 >More info -0.10 >More info WT 7 day-old whole seedlings Original data
132 abi4-102 -lincomycin -0.53 >More info -0.07 >More info Col-0 -lincomycin Original data GEO bulk
133 QC pSCR(QC pSCRBRI1) 0h BL 0.53 >More info 0.07 >More info WR 35S 0h BL brassinosteroid root Original data
134 coi1-2 JA 0.51 >More info 0.09 >More info JA Whole seedling Original data GEO bulk
135 PRR5-VP 18h light on 0.50 >More info 0.10 >More info WT 18h light on whole plant Original data GEO bulk
136 Heat shock optimum -0.05 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
137 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.52 >More info 0.07 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
138 ABA DFPM 0.51 >More info 0.08 >More info control Original data GEO bulk
139 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.52 >More info 0.06 >More info 2d dark-grown WT seedling Original data GEO bulk
140 Ba1 UV 0.51 >More info 0.06 >More info Ba1 mock UV seedling Original data
141 Whole root - S 3H 0.52 >More info 0.04 >More info Whole root - S 0H Original data GEO bulk
142 root longitudinal zone-2 pH 4.6 0.05 >More info 0.51 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
143 irradiated leaf (WT 5d) -0.03 >More info -0.53 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
144 gun5 norflurazon -0.61 >More info 0.06 >More info gun5 control Original data GEO bulk
145 PNO8 12 h 0.56 >More info -0.01 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
146 PRR5-VP 6h light on 0.54 >More info 0.01 >More info WT 6h light on whole plant Original data GEO bulk
147 Col-0 2h NAA 0.58 >More info -0.03 >More info Col-0 6h MOCK Original data GEO bulk
148 FAMA induced 48h -0.56 >More info 0.02 >More info control 48h Whole seedling Original data GEO bulk
149 Col-0 norflurazon -0.63 >More info 0.10 >More info Col-0 control Original data GEO bulk
150 Blue Light 45 min -0.01 >More info -0.52 >More info White Light 45min Original data Light treatments
151 seed germinating in countinuous light 24h SL -0.14 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
152 elevated CO2 high Mg root -0.50 >More info -0.01 >More info atmospheric CO2 high Mg root Root Original data
153 FLIGHT TAGESB plate6 ROOTS 0.01 >More info -0.51 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
154 aba3-1 0.50 >More info -0.02 >More info wt Original data GEO bulk
155 pvip1 pvip2 seedling 0.50 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
156 abi3-6 16 DAF Seed -0.53 >More info 0.06 >More info WT (Col-0) 16 DAF Seed developing seeds dissected from sliques Original data
157 pip3 At2g19270 TDNA 9 0.50 >More info -0.04 >More info Col-0 whole plant Original data GEO bulk
158 cdpk6-yfp -0.05 >More info 0.51 >More info Kan seedlings Original data GEO bulk
159 coi1-2 0.57 >More info -0.11 >More info Col-0 mock Whole seedling Original data GEO bulk
160 KAN1-GR 30min 0.58 >More info -0.14 >More info KAN1-GR 0min Original data GEO bulk
161 root cap pGL2(QC pSCRBRI1) 8h BL 0.50 >More info -0.07 >More info root cap pGL2(QC pSCRBRI1) 0h BL brassinosteroid root Original data
162 ein2-1 untreated 0.58 >More info -0.15 >More info WT untreated untreated Original data GEO bulk
163 ein2-1 +elf18 2h 0.57 >More info -0.15 >More info WT +elf18 2h elf18 Original data GEO bulk
164 cngc1-3 0.52 >More info -0.13 >More info Col-0 root Original data GEO bulk
165 Col-0 +lincomycin -0.51 >More info 0.13 >More info Col-0 -lincomycin Original data GEO bulk
166 Kas -Fe 24h Roots -0.51 >More info 0.14 >More info Kas +Fe 24h Roots Original data GEO bulk
167 Kas-1 -Fe 24h -0.51 >More info 0.14 >More info Kas-1 +Fe 24h roots Original data GEO bulk
168 vtc2 mature somatic embryo 0.20 >More info -0.55 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
169 WT 30μM phosphate 8 hours. -0.51 >More info 0.16 >More info WT control (not supplemented). Original data
170 CCA1-ox 6am non-polysomal -0.16 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
171 ABA 0.53 >More info -0.22 >More info control Original data GEO bulk
172 root cells cortex -Fe -0.56 >More info 0.26 >More info whole roots standard Original data GEO bulk
173 pif4pif5 mut dark 0.37 >More info -0.55 >More info WT dark Original data GEO bulk