All experiments
Experiment Genotype Treatment/Tissue Experimental Category
1 IAA 0.5 h Col-0 1 µM IAA / seedling Basic hormone treatment of seedlings
2 t-zeatin 0.5 h Col-0 1 µM t-zeatin / seedling Basic hormone treatment of seedlings
3 ABA 0.5 h Col-0 10 µM ABA / seedling Basic hormone treatment of seedlings
4 Methyl Jasmonate 0.5 h Col-0 10 µM MJ / seedling Basic hormone treatment of seedlings
5 ACC 0.5 h Col-0 10 µM ACC / seedling Basic hormone treatment of seedlings
6 IAA 1 h Col-0 1 µM IAA / seedling Basic hormone treatment of seedlings
7 t-zeatin 1 h Col-0 1 µM t-zeatin / seedling Basic hormone treatment of seedlings
8 ABA 1 h Col-0 10 µM ABA / seedling Basic hormone treatment of seedlings
9 Methyl Jasmonate 1 h Col-0 10 µM Metyl Jasmonate / seedling Basic hormone treatment of seedlings
10 ACC 1 h Col-0 10 µM ACC / seedling Basic hormone treatment of seedlings
11 IAA 3 h Col-0 1 µM IAA / seedling Basic hormone treatment of seedlings
12 t-zeatin 3 h Col-0 1 µM t-zeatin / seedling Basic hormone treatment of seedlings
13 ABA 3 h Col-0 10 µM ABA / seedling Basic hormone treatment of seedlings
14 Methyl Jasmonate 3 h Col-0 10 µM Metyl Jasmonate / seedling Basic hormone treatment of seedlings
15 ACC 3 h Col-0 10 µM ACC / seedling Basic hormone treatment of seedlings
16 GA3 1 h (ga1) ga1-5 1 µM GA3 / seedling Basic hormone treatment of seedlings
17 GA3 3 h (ga1) ga1-5 1 µM GA3 / seedling Basic hormone treatment of seedlings
18 Brassinolide 0.5 h (det2) det2-1 10 nM brassinolide / seedling Basic hormone treatment of seedlings
19 Brassinolide 1 h (det2) det2-1 10 nM brassinolide / seedling Basic hormone treatment of seedlings
20 Brassinolide 3 h (det2) det2-1 10 nM brassinolide / seedling Basic hormone treatment of seedlings
21 ARR22-ox ARR22-ox no treatment / seedling Cytokinin treatment of seedlings
22 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin / seedling Cytokinin treatment of seedlings
23 Imbibed 24 h ABA 3uM (seed) Col-0 imbibed seeds (3 µM ABA) / seeds Effect of ABA during seed imbibition
24 Imbibed 24 h ABA 30uM (seed) Col-0 imbibed seeds (30 µM ABA) / seeds Effect of ABA during seed imbibition
25 GA4 3 h (ga1, seed) ga1-3 5 µM GA4 / seeds Effect of gibberellin during seed imbibition
26 GA4 6 h (ga1, seed) ga1-3 5 µM GA4 / seeds Effect of gibberellin during seed imbibition
27 GA4 9 h (ga1, seed) ga1-3 5 µM GA4 / seeds Effect of gibberellin during seed imbibition
28 Propiconazole 3 h Col-0 10 µM propiconazole / seedling Effect of GA inhibitors on seedlings
29 Propiconazole 12 h Col-0 10 µM propiconazole / seedling Effect of GA inhibitors on seedlings
30 Uniconazole 3 h Col-0 10 µM uniconazole / seedling Effect of GA inhibitors on seedlings
31 Uniconazole 12 h Col-0 10 µM uniconazole / seedling Effect of GA inhibitors on seedlings
32 Paclobutrazol 3 h Col-0 10 µM paclobutrazol / seedling Effect of GA inhibitors on seedlings
33 Paclobutrazol 12 h Col-0 10 µM paclobutrazol / seedling Effect of GA inhibitors on seedlings
34 Prohexadione 3 h Col-0 10 µM prohexadione / seedling Effect of GA inhibitors on seedlings
35 Prohexadione 12 h Col-0 10 µM prohexadione / seedling Effect of GA inhibitors on seedlings
36 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T / seedling Effect of auxin inhibitors on seedlings
37 P-chlorophenoxy- isobutyric acid 3 h Col-0 10 µM PCIB / seedling Effect of auxin inhibitors on seedlings
38 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA / seedling Effect of auxin inhibitors on seedlings
39 Naphthyl- phthalamic acid 3 h Col-0 10 µM NPA / seedling Effect of auxin inhibitors on seedlings
40 Brz220 3 h Col-0 10 µM BRZ220 / seedling Effect of brassinosteroid inhibitors on seedlings
41 Brz220 12 h Col-0 10 µM BRZ220 / seedling Effect of brassinosteroid inhibitors on seedlings
42 AgNO3 3 h Col-0 10 µM AgNO3 / seedling Effect of ethylene inhibitors on seedlings
43 AVG 3 h Col-0 10 µM AVG / seedling Effect of ethylene inhibitors on seedlings
44 Cycloheximide 3 h Col-0 10 µM CHX / seedlings Effect of other inhibitors on seedlings
45 MG132 3 h Col-0 10 µM MG132 / seedlings Effect of other inhibitors on seedlings
46 PNO8 3 h Col-0 1 µM PNO8 / seedlings Effect of other inhibitors on seedlings
47 PNO8 12 h Col-0 1 µM PNO8 / seedlings Effect of other inhibitors on seedlings
48 Ibuprofen 3 h Col-0 10 µM Ibuprofen / seedlings Effect of other inhibitors on seedlings
49 Daminozide3 h Col-0 10 µM Daminozide / seedlings Effect of other inhibitors on seedlings
50 Salicylic Acid 3 h Col-0 10µM salicylic acid / seedlings Effect of other inhibitors on seedlings
51 Mutant bri1 bri1-5 no treatment / seedling Comparison of plant hormone related mutant
52 Mutant ga1-5 ga1-5 no treatment / seedling Comparison of plant hormone related mutant
53 ARR21C-ox ARR21C-ox no treatment / seedling ARR21C overexpression
54 Imbibed 1 h (seed) Col-0 imbibed seeds (water) / seeds Time course of early seed germination
55 Imbibed 3 h (seed) Col-0 imbibed seeds (water) / seeds Time course of early seed germination
56 -Sulfate 2 h Col-0 0 µM sulfate / root Response to sulfate limitation
57 -Sulfate 24 h Col-0 0 µM sulfate / root Response to sulfate limitation
58 Cotyledons Col-0 no treatment / cotyledons Developmental series; organs / tissues at different ages
59 Hypocotyl Col-0 no treatment / hypocotyls Developmental series; organs / tissues at different ages
60 Shoot apex vegetative &Young leaves Col-0 no treatment / shoot apex, vegetative and young
leaves
Developmental series; organs / tissues at different ages
61 Shoot apex vegetative Col-0 no treatment / shoot apex, vegetative Developmental series; organs / tissues at different ages
62 Shoot apex transition (before bolting) Col-0 no treatment / shoot apex, transition (before
bolting)
Developmental series; organs / tissues at different ages
63 Mature roots Col-0 no treatment / roots Developmental series; organs / tissues at different ages
64 Rosette leaf No2 Col-0 no treatment / rosette leaf #4 Developmental series; organs / tissues at different ages
65 Rosette leaf No12 gl1-T no treatment / rosette leaf #12 Developmental series; organs / tissues at different ages
66 Petiol (leaf7) Col-0 no treatment / leaf 7, petiole Developmental series; organs / tissues at different ages
67 Proximalhalf (leaf7) Col-0 no treatment / leaf 7, proximal half Developmental series; organs / tissues at different ages
68 Distal half (leaf7) Col-0 no treatment / leaf 7, distal half Developmental series; organs / tissues at different ages
69 Senescing leaf Col-0 no treatment / senescing leaves Developmental series; organs / tissues at different ages
70 Cauline leaves Col-0 no treatment / cauline leaves Developmental series; organs / tissues at different ages
71 Stem 2ndinternode Col-0 no treatment / stem, 2nd internode Developmental series; organs / tissues at different ages
72 Stem 1st node Col-0 no treatment / 1st node Developmental series; organs / tissues at different ages
73 Shoot apex inflorescence (after bolting) Col-0 no treatment / shoot apex, inflorescenze (after
bolting)
Developmental series; organs / tissues at different ages
74 Flowers stage15 Col-0 no treatment / flowers stage 15 Developmental series; organs / tissues at different ages
75 Pedicels stage15 Col-0 no treatment / flowers stage 15, pedicels Developmental series; organs / tissues at different ages
76 Sepals stage15 Col-0 no treatment / flowers stage 15, sepals Developmental series; organs / tissues at different ages
77 Petals stage15 Col-0 no treatment / flowers stage 15, petals Developmental series; organs / tissues at different ages
78 Stamen stage15 Col-0 no treatment / flowers stage 15 stamen Developmental series; organs / tissues at different ages
79 Carpels stage15 Col-0 no treatment / flowers stage 15, carpels Developmental series; organs / tissues at different ages
80 Mutant clv3-7(shoot apex) clv3-7 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
81 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
82 Mutant ap1-15(shoot apex) ap1-15 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
83 Mutant ap2-6(shoot apex) ap2-6 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
84 Mutant ap3-6(shoot apex) ap3-6 no treatment / Shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
85 Mutant ag-12(shoot apex) ag-12 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
86 Mutant ufo-1(shoot apex) ufo-1 no treatment / shoot apex, inflorescence (after
bolting)
Developmental series; organs / tissues at different ages
87 Mutant clv3-7(flower) clv3-7 no treatment / flower stage 12; multi-carpel
gynoeceum; enlarged meristem; increased organ
number
Developmental series; organs / tissues at different ages
88 Mutant lfy-12(flower) lfy-12 no treatment / flower stage 12; shoot
characteristics; most organs leaf-like
Developmental series; organs / tissues at different ages
89 Mutant ap1-15(flower) ap1-15 no treatment / flower stage 12; sepals replaced
by leaf-like organs, petals mostly lacking,
2˚C flowers
Developmental series; organs / tissues at different ages
90 Mutant ap2-6(flower) ap2-6 no treatment / flower stage 12; no sepals or
petals
Developmental series; organs / tissues at different ages
91 Mutant ap3-6(flower) ap3-6 no treatment / flower stage 12; no petals or
stamens
Developmental series; organs / tissues at different ages
92 Mutant ag-12(flower) ag-12 no treatment / flower stage 12; no stamens or
carpels
Developmental series; organs / tissues at different ages
93 Mutant ufo-1(flower) ufo-1 no treatment / flower stage 12; filamentous
organs in whorls two and three
Developmental series; organs / tissues at different ages
94 Mature pollen Col-0 no treatment / mature pollen Developmental series; organs / tissues at different ages
95 Seeds stage3 with siliques Col-0 no treatment / siliques, w/ seeds stage 3 (long
days)
Developmental series; organs / tissues at different ages
96 Seeds stage8 w/o siliques Col-0 no treatment / seeds stage 8, w/o siliques (long
days)
Developmental series; organs / tissues at different ages
97 Expanding leaf Col-0 no treatment / leaves (CAGE, long days) Developmental series; organs / tissues at different ages
98 Flower (stage12) Col-0 no treatment / flower (CAGE, long days) Developmental series; organs / tissues at different ages
99 FarRed Light 45min Col-0 continuous far red light / seedlings Light treatments
100 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse followed by 44 min.
darkness / seedlings
Light treatments
101 Red Light 45min Col-0 continuous red light / seedlings Light treatments
102 Blue Light 45 min Col-0 continuous blue light / seedlings Light treatments
103 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse followed by 40 min. of
darkness / seedlings
Light treatments
104 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light pulse followed by 40 min. of
darkness / seedlings
Light treatments
105 FarRed Light 4 h Col-0 continuous far red light / seedlings Light treatments
106 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse followed by 4 h of
darkness / seedlings
Light treatments
107 Red Light 4 h Col-0 continuous Red Light / seedlings Light treatments
108 Blue Light 4 h Col-0 continuous Blue Light / seedlings Light treatments
109 Dark 4 h pls UV-A 5 min Col-0 5 min. UV-A light pulse followed by 4 h of
darkness / seedlings
Light treatments
110 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light pulse followed by 4 h of
darkness / seedlings
Light treatments
111 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) / shoots Stress treatments
112 Cold Stress 24 h (root) Col-0 cold stress (4˚) / roots Stress treatments
113 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM mannitol) / shoots Stress treatments
114 Osmotic Stress 24 h (root) Col-0 osmotic stress (300 mM mannitol) / roots Stress treatments
115 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM NaCl) / shoots Stress treatments
116 Salt Stress 24 h (root) Col-0 salt stress (150 mM NaCl) / roots Stress treatments
117 Drought Stress 24 h (shoot) Col-0 drought (15 min. dry air then further incubation
in closed vessel) / shoots
Stress treatments
118 Drought Stress 24 h (root) Col-0 drought (15 min. dry air then further incubation
in closed vessel) / roots
Stress treatments
119 Genotoxic Stress 3 h (shoot) Col-0 genotoxic stress (1.5 µg/ml bleomycin + 22
µg/ml mitomycin) / shoots
Stress treatments
120 Genotoxic Stress 3 h (root) Col-0 genotoxic stress (1.5 µg/ml bleomycin + 22
µg/ml mitomycin) / roots
Stress treatments
121 Oxidative Stress 3 h (shoot) Col-0 oxidative stress (10 µM methyl viologen) /
shoots
Stress treatments
122 Oxidative Stress 3 h (root) Col-0 oxidative stress (10 µM methyl viologen) /
roots
Stress treatments
123 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8 W/m2 Philips TL40W/12;
thereafter recovery) / shoots
Stress treatments
124 UV Stress 24 h (root) Col-0 UV-B stress (15 min 1.8 W/m2 Philips TL40W/12;
thereafter recovery) / roots
Stress treatments
125 Wounding Stress3 h (shoot) Col-0 wounding (punctured with pins at beginning of
treatment) / shoots
Stress treatments
126 Wounding Stress3 h (root) Col-0 wounding (punctured with pins at beginning of
treatment) / roots
Stress treatments
127 Heat Recovery 24 h (shoot) Col-0 heat stress + 3 h recovery (25˚) / shoots Stress treatments
128 Heat Recovery 24 h (root) Col-0 heat stress + 3 h recovery (25˚) / roots Stress treatments
129 B.cinerea 18 h infection CS6673 B. cinerea infection / leaf Botrytis cinerea infection
130 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h (leaf) / leaves Elicitor treatments
131 P.syringae vir 4 h (leaf) Col-0 P.syringae vir 4 h (leaf) / leaves Elicitor treatments
132 DC3000 2 h (leaf) Col-0 infiltrated with 108 cfu/ml P. syringae pv.
tomato DC3000 harvested after 2h / leaves
Pseudomonas syringae pv. tomato or pv. phaseolicola infection
133 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108 cfu/ml P. syringae pv.
tomato avrRpm1 harvested after 2h / leaves
Pseudomonas syringae pv. tomato or pv. phaseolicola infection
134 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108 cfu/ml P. syringae pv.
tomato DC3000 hrcC- harvested after 2h / leaves
Pseudomonas syringae pv. tomato or pv. phaseolicola infection
135 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108 cfu/ml P. syringae pv.
phaseolicola harvested after 2h / leaves
Pseudomonas syringae pv. tomato or pv. phaseolicola infection
136 GST 4 h (leaf) Col-0 infiltrated with 1µM GST / leaves Elicitor treatments
137 HairpinZ 4 h (leaf) Col-0 infiltrated with 10 µM HrpZ / leaves Elicitor treatments
138 GST NPP1 4 h (leaf) Col-0 infiltrated with 1 µM GST-NPP1 / leaves Elicitor treatments
139 Flagellin 4 h (leaf) Col-0 infiltrated with 1 µM Flg22 / leaves Elicitor treatments
140 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100 µg/ml LPS / leaves Elicitor treatments
141 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf) / leaves Elicitor treatments
142 E.orontii Infection 6 h Col-0 E.orontii Infection 6 h / leaves Elicitor treatments
143 E.orontii Infection 3 day Col-0 E.orontii Infection 3 day / leaves Elicitor treatments
144 Benzyl adenin15 min Col 5 µM 6-Benzyl adenine / seedling GEO bulk
145 Mutant sav3-2 (SH) sav3-2 Low R:FR light / seedling GEO bulk
146 Mutant ein2(leaf) ein2 no treatment / leaves GEO bulk
147 Mutant coi1(leaf) coi1 no treatment / leaves GEO bulk
148 Mutant phyA (Dark) phyA Dark / seedling GEO bulk
149 Mutant phyB (Dark) phyB Dark / seedling GEO bulk
150 Mutant phyAphyB (Dark) phyA phyB Dark / seedling GEO bulk
151 Red Light 1h Col-0 Red Light / seedling GEO bulk
152 Mutant phyA (Red Light 1h) phyA Red Light / seedling GEO bulk
153 Mutant phyB (Red Light 1h) phyB Red Light / seedling GEO bulk
154 Mutant phyAphyB (Red Light 1h) phyA phyB Red Light / seedling GEO bulk
155 Mutant gh3.5-1D gh3.5-1D no treatment / leaves GEO bulk
156 Mutant siz1-3 siz1-3 mock / not identified GEO bulk
157 Mutant siz1-3 (Drought) siz1-3 Drought / not identified GEO bulk
158 Mutant nph4-1 nph4-1 mock / seedling GEO bulk
159 Mutant nph4-1 (IAA) nph4-1 5 µM IAA / seedling GEO bulk
160 Mutant arf19-1 arf19-1 mock / seedling GEO bulk
161 Mutant arf19-1 (IAA) arf19-1 5 µM IAA / seedling GEO bulk
162 Mutant nph4-1_arf19-1 nph4-1 arf19-1 mock / seedling GEO bulk
163 Mutant nph4-1_arf19-1 (IAA) nph4-1 arf19-1 5 µM IAA / seedling GEO bulk
164 Mutant iaa17-6 iaa17-6 mock / seedling GEO bulk
165 Mutant iaa17-6 (IAA) iaa17-6 5 µM IAA / seedling GEO bulk
166 Mutant axr3-1 axr3-1 mock / seedling GEO bulk
167 Mutant axr3-1 (IAA) axr3-1 5 µM IAA / seedling GEO bulk
168 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling GEO bulk
169 Mutant iaa5_6_19(IAA) iaa5 iaa6 iaa19 5 µM IAA / seedling GEO bulk
170 Mutant arf2-6 arf2-6 mock / seedling GEO bulk
171 Mutant arf2-6 (IAA) arf2-6 5 µM IAA / seedling GEO bulk
172 At1g54160 ox At1g54160 ox (NFYA5) no treatment / seedling GEO bulk
173 Mutant arf2 (etiol) arf2 mock / etiol seedling GEO bulk
174 Mutant tga2_5_6 tga2 5 6 mock / seedling GEO bulk
175 Mutant pif1-2 (Dark, etiol) pif1-2 Dark / etiol seedling GEO bulk
176 Phytoprostane A1 4 h Col 75 µM phytoprostane A1 / seedling GEO bulk
177 OPDA 4 h Col 75 µM OPDA / seedling GEO bulk
178 Fe starvation 3 h Col Fe starvation / whole roots GEO bulk
179 Fe starvation 24 h Col Fe starvation / whole roots GEO bulk
180 Fe starvation 72 h Col Fe starvation / whole roots GEO bulk
181 Estradiol4 days Col Estradiol 10 µM / seedling GEO bulk
182 Mutant lwd1_lwd2 lwd1lwd2 no treatment / shoot GEO bulk
183 Norflurazon Col-0 5 µM Norflurazon / seedling GEO bulk
184 K starvation (shoot) ws-2 K starvation / shoot GEO bulk
185 K starvation (root) ws-2 K starvation / root GEO bulk
186 Selenate (root) WS Selenate 40 µM / root GEO bulk
187 Selenate (shoot) WS Selenate 40 µM / shoot GEO bulk
188 Mutant cry1 (High Light) cry1 high light: 1000 µmol quanta m-2 s-1 /
seedling
GEO bulk
189 Mutant cry1 cry1 Continuous white light / seedling GEO bulk
190 Mutant hy5 (High Light) hy5 high light: 1000 µmol quanta m-2 s-1 /
seedling
GEO bulk
191 Mutant hy5 hy5 Continuous white light / seedling GEO bulk
192 Mutant sav3-2 (WL) sav3-2 Continuous white light / seedling GEO bulk
193 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) / leaves GEO bulk
194 Mutant NahG(leaf) Nahg no treatment / leaves GEO bulk