4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Col-0 DEX Shade
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List of experiments correlated with "Col-0 DEX Shade"  Help Download transcriptome of top 30
Score Experiment Correlation from
Col-0 DEX Shade		 Correlation to
Col-0 DEX Shade		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Col-0 DEX Shade 1.00 >More info 1.00 >More info Col-0 DEX WL seedlings Original data
2 Night Time Treatment -0.69 >More info -0.78 >More info Night Time Control 1hr white light pulse aerial rosette Original data
3 Col-0 Mock Shade 0.76 >More info 0.71 >More info Col-0 Mock WL seedlings Original data
4 6h volatiles Sm. R3089 0.62 >More info 0.79 >More info 6h untreated whole seedling Original data GEO bulk
5 Col-0 shade 0.55 >More info 0.85 >More info Col-0 light seedlings Original data GEO bulk
6 seedling 24h after Gamma atm-1 -0.61 >More info -0.77 >More info seedling day 2 unirradiated atm-1 24h Original data
7 Day Time Treatment -0.56 >More info -0.81 >More info Day Time Control 1hr white light pulse aerial rosette Original data
8 shl-2 Pool 0.58 >More info 0.79 >More info Ler Pool seedling Original data GEO bulk
9 seedling 24h after Gamma WT -0.61 >More info -0.74 >More info seedling day 2 unirradiated WT 24h Original data
10 Col-0 WT HL 3h -0.63 >More info -0.67 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
11 Pseudomonas 0.56 >More info 0.74 >More info Control pseudomonas treated whole seedling Original data GEO bulk
12 petiole in FRD 0.57 >More info 0.73 >More info petiole in WL petioles Original data GEO bulk
13 Shoot dark control 7h 0.59 >More info 0.68 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
14 MYB12OX/tt4 0.56 >More info 0.69 >More info Col-0 aerial part Original data
15 1 h Light Total RNA -0.56 >More info -0.69 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
16 leaf blade in FRD 0.56 >More info 0.69 >More info leaf blade in WL leaf blades Original data GEO bulk
17 WT hypoxia 0.52 >More info 0.72 >More info WT normoxia whole rosette Original data
18 M6PR transgenic leaf 0mM NaCl 0.54 >More info 0.70 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
19 60m light -0.47 >More info -0.77 >More info before light whole seedlings Original data GEO bulk
20 12h volatiles Sm. R3089 0.40 >More info 0.82 >More info 12h untreated whole seedling Original data GEO bulk
21 WOX1-1 0.55 >More info 0.66 >More info Col-0 aerial part Original data
22 camta1-2 0.51 >More info 0.70 >More info Col-0-WT Original data GEO bulk
23 Shoot dark control 24h 0.53 >More info 0.65 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
24 mutant acs6E (single mutant) -0.62 >More info -0.56 >More info col control (single mutant) Original data GEO bulk
25 sid2 0.51 >More info 0.66 >More info Col rosettes Original data GEO bulk
26 1 h Light IP RNA -0.52 >More info -0.63 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
27 WT NAA 2h 0.38 >More info 0.77 >More info WT 0h Leaf tissue Original data GEO bulk
28 Light 4h steady-state -0.49 >More info -0.66 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
29 Atss3 Light1 -0.54 >More info -0.60 >More info Atss3 Dark0.5 Original data GEO bulk
30 MIL4 ox 0.54 >More info 0.60 >More info Col Original data GEO bulk
31 Dark 6h ivd 0.59 >More info 0.54 >More info 0h ivd Original data
32 Light 4h polysome-bound -0.47 >More info -0.66 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
33 30m light -0.36 >More info -0.76 >More info before light whole seedlings Original data GEO bulk
34 petiole in D 0.56 >More info 0.55 >More info petiole in WL petioles Original data GEO bulk
35 WT 90-105 min Xanthomonas -0.59 >More info -0.52 >More info WT T0 Original data GEO bulk
36 mil4 0.49 >More info 0.62 >More info Col rosettes Original data GEO bulk
37 mil4 sid2 0.50 >More info 0.60 >More info Col rosettes Original data GEO bulk
38 24h volatiles Sm. R3089 0.45 >More info 0.65 >More info 24h untreated whole seedling Original data GEO bulk
39 seedling 1.5h after HZE atm-1 0.47 >More info 0.63 >More info seedling day 1 unirradiated atm-1 1.5h Original data
40 pap1-D 0.51 >More info 0.58 >More info Col-0 aerial part Original data
41 mkk2 control rep 0.57 >More info 0.52 >More info Col-0 Time 0 rep Original data GEO bulk
42 pap1-D/tt4 0.48 >More info 0.61 >More info Col-0 aerial part Original data
43 Shoot submergence 24h 0.50 >More info 0.58 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
44 2d dark-grown WT(Col-0)/1 hr red light -0.44 >More info -0.64 >More info 2d dark-grown WT seedling Original data GEO bulk
45 Red/FR Light 4 h 0.42 >More info 0.65 >More info FarRed Light 4 h Original data Light treatments
46 leaf blade in D 0.46 >More info 0.61 >More info leaf blade in WL leaf blades Original data GEO bulk
47 tt4 0.45 >More info 0.62 >More info Col-0 aerial part Original data
48 FarRed Light 45min 0.24 >More info 0.83 >More info White Light 45min Original data Light treatments
49 Col(gl) leaf 0mM NaCl 0.48 >More info 0.59 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
50 Col(gl) 0mM NaCl 0.48 >More info 0.59 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
51 low CO2 + dark 0.49 >More info 0.58 >More info normal CO2 + light Original data GEO bulk
52 mutant acs9B (single mutant) 0.55 >More info 0.51 >More info col control (single mutant) Original data GEO bulk
53 Dark 6h wt 0.61 >More info 0.45 >More info 0h wt Original data
54 WT cold -0.49 >More info -0.57 >More info WT control All aerial tissue Original data GEO bulk
55 xyl-grown cell culture- 1h 1mM Suc -0.28 >More info -0.78 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
56 AmGSTF1 expressor 0.49 >More info 0.56 >More info WT leaf tissue Original data GEO bulk
57 rGRF3x35S:GIF 0.49 >More info 0.56 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
58 TaFLS overexpression line (OE2) 0.56 >More info 0.48 >More info Col-0 Rosette leaves Original data
59 Dark 6h hml 0.60 >More info 0.44 >More info 0h hml Original data
60 FarRed Light 4 h -0.34 >More info -0.70 >More info White Light 4 h Original data Light treatments
61 short 17-degree- -0.25 >More info -0.79 >More info control short Original data GEO bulk
62 ebs Pool 0.50 >More info 0.53 >More info Ler Pool seedling Original data GEO bulk
63 ptpks2 -0.36 >More info -0.66 >More info Col-WT leaves Original data GEO bulk
64 Blue Light 4 h -0.28 >More info -0.73 >More info White Light 4 h Original data Light treatments
65 Light 3day wt -0.44 >More info -0.57 >More info 0h wt Original data
66 Heat shock optimum 0.36 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
67 WT Red light 1h -0.37 >More info -0.64 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
68 Light 0.5h polysome-bound -0.31 >More info -0.69 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
69 penta mutant (higher order mutant) 0.49 >More info 0.50 >More info col control (higher order mutant) Original data GEO bulk
70 Dark 40 min pls UV-A 5 min -0.36 >More info -0.62 >More info Dark 45 min Original data Light treatments
71 Atss3 Light4 -0.45 >More info -0.53 >More info Atss3 Dark0.5 Original data GEO bulk
72 WT Na2S -0.46 >More info -0.52 >More info WT water Na2S leaf Original data GEO bulk
73 erf104-ko H2O 4h -0.51 >More info -0.46 >More info Col-0 H2O 4h Original data GEO bulk
74 Dark 40min pls UV-AB 5min -0.42 >More info -0.55 >More info Dark 45 min Original data Light treatments
75 Light 0.5h steady-state -0.28 >More info -0.69 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
76 gpa1-4/agb1-2 clean-air 3h 0.43 >More info 0.54 >More info Col clean-air 3h clean-air Original data GEO bulk
77 det2 light-dark 0.45 >More info 0.51 >More info det2 light light-dark Original data GEO bulk
78 COL-0-Fe--shoot -0.42 >More info -0.54 >More info COL-0-Ctrl--shoot shoot Original data
79 Dark 1day ivd 0.56 >More info 0.39 >More info 0h ivd Original data
80 low R/FR JA spray 0.33 >More info 0.62 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
81 oas-a1.1 root -0.28 >More info -0.66 >More info WT-Untreated Root Original data GEO bulk
82 Selenate (shoot) -0.42 >More info -0.52 >More info Ws (shoot) Original data GEO bulk
83 Shoot Selenate -0.42 >More info -0.52 >More info Shoot control 40 micromolar selenate Shoot Original data GEO bulk
84 lht1 untreated -0.55 >More info -0.38 >More info WT untreated untreated leaf Original data GEO bulk
85 GR-bdl DEX IAA -0.26 >More info -0.67 >More info GR-bdl IAA Original data GEO bulk
86 camta1 leaf water 0.40 >More info 0.53 >More info Col-0 leaf water leaf Original data GEO bulk
87 pip3 At2g19270 TDNA 9 0.43 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
88 gun1-1 +lincomycin -0.31 >More info -0.62 >More info Col-0 +lincomycin Original data GEO bulk
89 Col(gl) leaf 100mM NaCl 0.52 >More info 0.40 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
90 Col(gl) 100mM NaCl 0.52 >More info 0.40 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
91 Red Light 4 h 0.38 >More info 0.54 >More info White Light 4 h Original data Light treatments
92 Col BTH 0.25 >More info 0.67 >More info Col rosettes Original data GEO bulk
93 mutant acs2C (single mutant) 0.50 >More info 0.42 >More info col control (single mutant) Original data GEO bulk
94 Dark 1day wt 0.54 >More info 0.37 >More info 0h wt Original data
95 Dark 44min pls RedLigh 1min -0.27 >More info -0.64 >More info Dark 45 min Original data Light treatments
96 seedling 1.5h after Gamma WT -0.50 >More info -0.41 >More info seedling day 1 unirradiated WT 1.5h Original data
97 M6PR transgenic 0mM NaCl 0.41 >More info 0.50 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
98 csn3-1 dark -0.30 >More info -0.61 >More info WT dark Original data GEO bulk
99 Leafminer damaged seedlings 0.33 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
100 phyABDE Rc50 -0.32 >More info -0.56 >More info phyABDE Dark red light whole seedling Original data GEO bulk
101 npr1 0.36 >More info 0.52 >More info WT(COL) Original data GEO bulk
102 3x(p) 0.38 >More info 0.50 >More info 2x two week old seedlings Original data
103 Laer pretreat GA Flg22 1h 0.16 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
104 NJ15 -0.28 >More info -0.59 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
105 Dark 1day hml 0.54 >More info 0.32 >More info 0h hml Original data
106 Dark 2day wt 0.52 >More info 0.34 >More info 0h wt Original data
107 IAA 1 h 0.28 >More info 0.58 >More info Mock 1 h Original data Basic hormone treatment of seedlings
108 npr1 sni1 ssn2 -0.53 >More info -0.32 >More info npr1 sni1 water water seedling Original data GEO bulk
109 mutant acs2B (single mutant) -0.54 >More info -0.29 >More info col control (single mutant) Original data GEO bulk
110 Mutant sav3-2 (SH) -0.33 >More info -0.50 >More info Col-0 (SH) Original data GEO bulk
111 gun5 control -0.33 >More info -0.50 >More info Col-0 control Original data GEO bulk
112 csn4-1 mutant -0.28 >More info -0.55 >More info WT dark Original data GEO bulk
113 sav3-2 shade -0.33 >More info -0.50 >More info Col-0 shade seedlings Original data GEO bulk
114 des1 water -0.51 >More info -0.31 >More info WT water water leaf Original data GEO bulk
115 WT resupplied Pi 4h -0.50 >More info -0.32 >More info WT complete seedlings Original data
116 Dark 4 h pls UV-AB 5min -0.31 >More info -0.51 >More info Dark 4 h Original data Light treatments
117 short 12-degree- -0.22 >More info -0.60 >More info control short Original data GEO bulk
118 csn5 (csn5a-2 csn5b) dark -0.22 >More info -0.60 >More info WT dark Original data GEO bulk
119 gapcp1gapcp2 -0.53 >More info -0.28 >More info WT Original data GEO bulk
120 ape2 low light 0.30 >More info 0.51 >More info Ws-2 low light Original data GEO bulk
121 miR mutant (higher order mutant) 0.57 >More info 0.24 >More info col control (higher order mutant) Original data GEO bulk
122 A6 mutant -0.52 >More info -0.28 >More info WT rosette leaves Rosette leaves Original data GEO bulk
123 anti-sense for AtAOX1a 0.26 >More info 0.54 >More info WT Original data GEO bulk
124 bri1-116 0.07 >More info 0.73 >More info Col seedling Original data GEO bulk
125 xyl-grown cell culture- 1h 1mM Fru -0.27 >More info -0.53 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
126 IAA 0.5 h 0.24 >More info 0.54 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
127 Red Light 45min 0.20 >More info 0.58 >More info White Light 45min Original data Light treatments
128 WT-Dry -0.52 >More info -0.25 >More info WT-CK dehydration treatment 1h Original data
129 npr1 sni1 SA 0.50 >More info 0.27 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
130 long 17-degree- -0.20 >More info -0.57 >More info control long Original data GEO bulk
131 low R/FR mock spray 0.17 >More info 0.60 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
132 lht1 PstDC3000 48h -0.52 >More info -0.24 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
133 Cocultivation 8 hrs leaf 0.17 >More info 0.58 >More info Mock cocultivation 8 hrs leaf Leaf Original data
134 aba2 1% sucrose 12-day-old 0.55 >More info 0.18 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
135 toc1-1-85hr -0.22 >More info -0.51 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
136 siliques AtHb1 control 0.21 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
137 seedling 1.5h after Gamma atm-1 -0.53 >More info -0.19 >More info seedling day 1 unirradiated atm-1 1.5h Original data
138 35S:GIF 0.52 >More info 0.19 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
139 WT NAA 1h 0.11 >More info 0.60 >More info WT 0h Leaf tissue Original data GEO bulk
140 cca1-lhy 15m light 0.21 >More info 0.50 >More info 15m light whole seedlings Original data GEO bulk
141 ANAC102 knock-out 0.11 >More info 0.57 >More info Col-0 Original data GEO bulk
142 atr mock 0.54 >More info 0.13 >More info WT mock shoot apical meristem Original data
143 protoplasts T1 [flg22] -0.16 >More info -0.51 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
144 6h volatiles Sp. HRO-C48 0.56 >More info 0.09 >More info 6h untreated whole seedling Original data GEO bulk
145 Col0-PsmES4326-24hpi 0.04 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
146 35S:ATR1 like miR -0.01 >More info 0.65 >More info WT for miR Original data GEO bulk
147 R. solani AG2-1 -0.50 >More info -0.12 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
148 shoot hypoxia pRBCS -0.11 >More info -0.51 >More info shoot hypoxia total Original data GEO bulk
149 seed germinating in countinuous light 24h SL -0.06 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
150 Shoot apex inflorescence (after bolting) -0.06 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
151 WT (Col) glucose -0.07 >More info -0.50 >More info WT (Col) glucose seedlings Original data GEO bulk
152 miR393 0h -0.05 >More info -0.50 >More info WT 0h Leaf tissue Original data GEO bulk
153 IAA7mII over-expressor IAA Treated -0.14 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
154 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
155 Shoot submergence 7h 0.51 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
156 entire vegetative rosette 0.58 >More info -0.07 >More info Col-0 Mock WL entire vegetative rosette Original data
157 WT zebularine 5d -0.50 >More info 0.01 >More info WT mock 5d shoot apical meristem Original data
158 Dark 2day ivd 0.50 >More info -0.01 >More info 0h ivd Original data
159 shoot hypoxia p35S 0.19 >More info -0.66 >More info shoot hypoxia total Original data GEO bulk
160 nrpe1 0.56 >More info -0.12 >More info WT Original data
161 brat1nrpe1 0.50 >More info -0.09 >More info WT Original data
162 shoot control p35S 0.13 >More info -0.54 >More info shoot control total Original data GEO bulk