4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root cells columella root cap -Fe
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List of experiments correlated with "root cells columella root cap -Fe"  Help Download transcriptome of top 30
Score Experiment Correlation from
root cells columella root cap -Fe		 Correlation to
root cells columella root cap -Fe		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root cells columella root cap -Fe 1.00 >More info 1.00 >More info whole roots standard Original data GEO bulk
2 root cells -Fe 0.88 >More info 0.89 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
3 root cells epidermis and lateral root cap -Fe 0.85 >More info 0.85 >More info whole roots standard Original data GEO bulk
4 root cells endodermis and quiescent center -Fe 0.82 >More info 0.83 >More info whole roots standard Original data GEO bulk
5 root protoplasts 40 mM NaCl 0.78 >More info 0.86 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
6 root cells stele -Fe 0.78 >More info 0.85 >More info whole roots standard Original data GEO bulk
7 protoplasted roots pH4.6 0.81 >More info 0.80 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
8 2hr transitory KNO3 SR cell 0.57 >More info 0.74 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
9 FLIGHT TAGESB plate6 ROOTS 0.56 >More info 0.70 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
10 Selenate (root) 0.53 >More info 0.71 >More info Ws (root) Original data GEO bulk
11 Root Selenate 0.53 >More info 0.71 >More info Root control 40 micromolar selenate Root Original data GEO bulk
12 inhibitor B Treated 0.52 >More info 0.72 >More info Negative Control Original data GEO bulk
13 root longitudinal zone-4 low sulfur 0.65 >More info 0.58 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
14 IAA/inhibitor B Treated 0.51 >More info 0.68 >More info IAA Treated Original data GEO bulk
15 whole roots 140 mM NaCl 1 hour 0.40 >More info 0.77 >More info whole roots standard Original data GEO bulk
16 2hr continuous KNO3 SR cell 0.56 >More info 0.60 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
17 whole roots 140 mM NaCl 4 hour 0.46 >More info 0.68 >More info whole roots standard Original data GEO bulk
18 4C 1h 0.45 >More info 0.68 >More info 4C 0h Original data GEO bulk
19 GA4 3 h (ga1 seed) 0.64 >More info 0.49 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
20 Protoplast Induced 0.39 >More info 0.73 >More info Uninduced Original data GEO bulk
21 WT 3H Cold 0.38 >More info 0.74 >More info WT control Original data GEO bulk
22 Chemically 0.40 >More info 0.71 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
23 whole roots 140 mM NaCl 30 minutes 0.36 >More info 0.73 >More info whole roots standard Original data GEO bulk
24 TAMM27 roots 2hr KNO3 nitrogen 0.53 >More info 0.55 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
25 entire vegetative rosette 0.59 >More info 0.49 >More info Col-0 Mock WL entire vegetative rosette Original data
26 cpctry 0.37 >More info 0.71 >More info Col Original data GEO bulk
27 2hr KCl control SR cell 0.51 >More info 0.56 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
28 WT seedlings MV 0.46 >More info 0.61 >More info WT seedlings control Seedlings Original data GEO bulk
29 (Col-0)+200 uM As 0.47 >More info 0.60 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
30 9 hr Hypoxia 1 hr recovery Total RNA 0.48 >More info 0.59 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
31 mp-B4149 mutant IAA 0.61 >More info 0.45 >More info GR-bdl IAA Original data GEO bulk
32 5-Triiodobenzoic acid3 h 0.37 >More info 0.69 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
33 Cycloheximide 3 h 0.55 >More info 0.50 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
34 2hr transitory KNO3 PrR cell 0.65 >More info 0.39 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
35 dicamba 0.46 >More info 0.58 >More info WT mock whole seedling Original data GEO bulk
36 WT 30μM arsenate 8 hours. 0.49 >More info 0.55 >More info WT control (not supplemented). Original data
37 Ovary 0.58 >More info 0.45 >More info Seedling Original data GEO bulk
38 DUO1 induced 24h 0.49 >More info 0.54 >More info 24hr-not-induced whole plant Original data GEO bulk
39 OXUPB1-2 meristematic zone 0.36 >More info 0.67 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
40 line J1551-5 days control + 2 days salt s 0.42 >More info 0.61 >More info line J1551-7 days-control Original data
41 DUO1 induced 12h 0.45 >More info 0.57 >More info 12hr-not-induced whole plant Original data GEO bulk
42 bri1-116 0.29 >More info 0.73 >More info Col seedling Original data GEO bulk
43 abi1 hypocotyl 0.34 >More info 0.68 >More info Ler hypocotyl hypocotyl Original data GEO bulk
44 WT+H2O2 0.51 >More info 0.49 >More info WT H2O2 Original data GEO bulk
45 (Col-0)+100 uM As 0.46 >More info 0.54 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
46 NJ15 0.35 >More info 0.65 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
47 ERF115OE roottip5days -0.60 >More info -0.39 >More info Col-0 roottip5days root tips Original data
48 Mutant arf2-6 (IAA) 0.47 >More info 0.52 >More info Col (IAA) Original data GEO bulk
49 root cells cortex -Fe 0.72 >More info 0.26 >More info whole roots standard Original data GEO bulk
50 Stigma 0.57 >More info 0.41 >More info Seedling Original data GEO bulk
51 TNT-seedlings 0.14 >More info 0.84 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
52 bbx24 in Simulated Shade -0.32 >More info -0.66 >More info WT in simulated shade shade seedling Original data
53 arr-dmso-sample 0.60 >More info 0.37 >More info Wt-dmso-sample seedling Original data
54 WT 6H Cold 0.45 >More info 0.52 >More info WT control Original data GEO bulk
55 VND6 12h 0.42 >More info 0.54 >More info wt 12h Original data GEO bulk
56 root stele 40 mM NaCls 0.44 >More info 0.52 >More info root stele Original data GEO bulk
57 NaCl Col 0.30 >More info 0.66 >More info Col Original data GEO bulk
58 cngc1-3 -0.55 >More info -0.39 >More info Col-0 root Original data GEO bulk
59 L2.4 mutant 0.39 >More info 0.55 >More info Wt Original data GEO bulk
60 toc1-1-81hr 0.41 >More info 0.53 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
61 Col-0 low oxygen 0.35 >More info 0.59 >More info Col-0 control low oxygen root Original data GEO bulk
62 root cells epidermis 140mM NaCl 8 hours 0.42 >More info 0.52 >More info root cells epidermis standard 1 hour root cells epidermis Original data
63 Ws HS 0.42 >More info 0.51 >More info Ws control heat shocked seedling Original data GEO bulk
64 WT-16ºC -0.38 >More info -0.54 >More info WT-23ºC Original data GEO bulk
65 root epidermis and lateral root cap 40 mM NaCl 0.37 >More info 0.55 >More info root epidermis and lateral root cap Original data GEO bulk
66 inhibitor A Treated 0.33 >More info 0.59 >More info Negative Control Original data GEO bulk
67 WT Root Hypoxia 0.37 >More info 0.54 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
68 WT-Dry 0.32 >More info 0.59 >More info WT-CK dehydration treatment 1h Original data
69 Col-0 wt Hypoxic 0.36 >More info 0.54 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
70 35S:VND7-VP16-GR+DEX +CHX 0.28 >More info 0.62 >More info 35S:VND7-VP16-GR+CHX 10mM cycloheximide (CHX) 2hrs followed by 10mM dexamethazone (DEX) 4hrs whole seedlings Original data GEO bulk
71 Col-0 6h NAA 0.39 >More info 0.51 >More info Col-0 6h MOCK Original data GEO bulk
72 Anoxia 0.32 >More info 0.58 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
73 1h +Pi -0.32 >More info -0.58 >More info 1h -Pi root Original data GEO bulk
74 AgNO3 3 h 0.39 >More info 0.50 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
75 root longitudinal zone-4 pH 4.6 0.31 >More info 0.58 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
76 cngc19 -0.62 >More info -0.26 >More info Col-0 root Original data GEO bulk
77 toc1-1-73hr 0.38 >More info 0.50 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
78 root longitudinal zone-4 NaCl 0.27 >More info 0.61 >More info root longitudinal zone-4 Original data GEO bulk
79 intact root control -0.57 >More info -0.31 >More info Control for tissue data mock whole root Original data GEO bulk
80 Fe starvation 72 h 0.29 >More info 0.59 >More info Control Original data GEO bulk
81 whole roots -Fe 72 hour 0.29 >More info 0.59 >More info whole roots standard Original data GEO bulk
82 rosette Dark Wounded 0.37 >More info 0.50 >More info rosette Dark Control Original data GEO bulk
83 Leaf wounded 0.24 >More info 0.63 >More info Leaf control vegetative leaf Original data GEO bulk
84 aba1 hypocotyl 0.36 >More info 0.51 >More info Ler hypocotyl hypocotyl Original data GEO bulk
85 myb61 xylem 0.21 >More info 0.66 >More info wt xylem xylem Original data GEO bulk
86 2hr continuous KNO3 PrR cell 0.57 >More info 0.30 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
87 whole roots -Fe 48 hour 0.30 >More info 0.56 >More info whole roots standard Original data GEO bulk
88 whole roots -Fe 12 hour 0.30 >More info 0.56 >More info whole roots standard Original data GEO bulk
89 SA 0.33 >More info 0.53 >More info WT mock Whole seedling Original data GEO bulk
90 Col-0 2h NAA 0.31 >More info 0.55 >More info Col-0 6h MOCK Original data GEO bulk
91 root cells epidermis 140mM NaCl 3 hours 0.36 >More info 0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
92 35S::RSL4 -0.29 >More info -0.57 >More info Col-0 Control root Original data GEO bulk
93 roottip hypoxia total 0.29 >More info 0.55 >More info roottip control total Original data GEO bulk
94 GA 120min 0.32 >More info 0.52 >More info CON120 GA 120 min. root tips Original data GEO bulk
95 Fe starvation 3 h 0.29 >More info 0.53 >More info Control Original data GEO bulk
96 whole roots -Fe 3 hour 0.29 >More info 0.53 >More info whole roots standard Original data GEO bulk
97 Heat shock optimum 0.17 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
98 Rose Bengal 0.5 uM 0.26 >More info 0.55 >More info Control RB and PER Rose Bengal Original data
99 ABA 1 h 0.24 >More info 0.56 >More info Mock 1 h Original data Basic hormone treatment of seedlings
100 Col-0 HS 0.28 >More info 0.52 >More info Col-0 control heat shocked seedling Original data GEO bulk
101 Col-0 0h NAA 0.26 >More info 0.54 >More info Col-0 6h MOCK Original data GEO bulk
102 WT (Col-0) heat shock 0.28 >More info 0.52 >More info WT (Col-0) whole seedling Original data GEO bulk
103 WT drought 0.30 >More info 0.50 >More info WT control All aerial tissue Original data GEO bulk
104 WT seedlings IAA 0.29 >More info 0.51 >More info WT seedlings control Seedlings Original data GEO bulk
105 seedling 3h after Gamma WT 0.24 >More info 0.56 >More info seedling day 1 unirradiated WT 3h Original data
106 lateral root cap-columella pBRN2 0h BL 0.53 >More info 0.26 >More info WR 35S 0h BL brassinosteroid root Original data
107 spx1 spx2 no Pi 0.50 >More info 0.28 >More info WT no Pi seedlings Original data
108 Salt Stress 24 h (root) 0.28 >More info 0.50 >More info Stress mock 24 h (root) Original data Stress treatments
109 csn4-1 mutant 0.51 >More info 0.26 >More info WT dark Original data GEO bulk
110 Mutant axr3-1 (IAA) 0.21 >More info 0.56 >More info Col (IAA) Original data GEO bulk
111 Col0-PsmES4326-24hpi 0.16 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
112 FAMA induced 4h 0.50 >More info 0.26 >More info control 4h Whole seedling Original data GEO bulk
113 MG132 3 h 0.21 >More info 0.54 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
114 Col in Pi deficiency medium 0.23 >More info 0.51 >More info Col in control medium root Original data GEO bulk
115 1hr-pH4.5 0.23 >More info 0.51 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
116 4C 2h(SOIL) 0.20 >More info 0.54 >More info 4C 0h(SOIL) Original data GEO bulk
117 myb61 cork 0.21 >More info 0.53 >More info wt cork cork Original data GEO bulk
118 Leafminer damaged seedlings 0.17 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
119 35S:RPS4 eds1-2 2h -0.17 >More info -0.55 >More info 35S:RPS4 2h leaves Original data
120 ex2 flu dark 8hours/30 minute light 0.21 >More info 0.51 >More info col dark 8hours/30 minute light Original data GEO bulk
121 Kas-1 -Fe 24h -0.14 >More info -0.56 >More info Kas-1 +Fe 24h roots Original data GEO bulk
122 Kas -Fe 24h Roots -0.14 >More info -0.56 >More info Kas +Fe 24h Roots Original data GEO bulk
123 Light 0.16 >More info 0.53 >More info Control Original data GEO bulk
124 IAA7mII over-expressor IAA Treated -0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
125 whole roots 140 mM NaCl 16 hour 0.18 >More info 0.51 >More info whole roots standard Original data GEO bulk
126 columella auxin 0.18 >More info 0.51 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
127 Laer pretreat GA Flg22 1h -0.03 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
128 12m.KCl 0.16 >More info 0.51 >More info To. KCl 14 day old Roots Original data GEO bulk
129 flu dark 8hours/30 minute light 0.15 >More info 0.51 >More info col dark 8hours/30 minute light Original data GEO bulk
130 root BA 12h 0.10 >More info 0.56 >More info root control 12h boron (5mM) root Original data GEO bulk
131 ex1 flu dark 8hours/30 minute light 0.13 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
132 Red/FR Light45min -0.04 >More info 0.68 >More info FarRed Light 45min Original data Light treatments
133 siliques AtHb1 control 0.12 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
134 root hypoxia p35S 0.51 >More info 0.12 >More info root hypoxia total hypoxia root Original data GEO bulk
135 2xX6x interploidy cross 0.13 >More info 0.50 >More info 2xX2x cross Original data GEO bulk
136 35S:VND7-VP16-GR+CHX 0.08 >More info 0.55 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
137 Shoot apex inflorescence (after bolting) -0.03 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
138 CDB1-Knockout -0.05 >More info -0.56 >More info WT Original data GEO bulk
139 expressing C2 Mock 0.11 >More info 0.50 >More info LUC2C Original data GEO bulk
140 ABA control 0.54 >More info 0.06 >More info No ABA control Original data GEO bulk
141 Tsu-1 -Fe 24h 0.10 >More info 0.50 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
142 Tsu -Fe 24h Roots 0.10 >More info 0.50 >More info Tsu +Fe 24h Roots Original data GEO bulk
143 eto1-4 +393 -0.09 >More info -0.50 >More info eto1-4 whole seedling Original data GEO bulk
144 TaFLS overexpression line (OE1) 0.00 >More info 0.59 >More info Col-0 Rosette leaves Original data
145 seed germinating in countinuous light 24h SL -0.09 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
146 Col BTH -0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
147 opr3 OPDA 0.5 h 0.07 >More info 0.50 >More info opr3 0 h Original data GEO bulk
148 rGRF -0.03 >More info -0.53 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
149 CCA1-ox 6am non-polysomal 0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
150 xyl-grown cell culture- 1h 1mM Fru -0.02 >More info 0.56 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
151 myb3 myb3r4d -0.06 >More info 0.50 >More info Wild type Col0-9d whole seedlings Original data GEO bulk