4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root - 01% oxygen - 30min
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List of experiments correlated with "root - 01% oxygen - 30min"  Help Download transcriptome of top 30
Score Experiment Correlation from
root - 01% oxygen - 30min		 Correlation to
root - 01% oxygen - 30min		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root - 01% oxygen - 30min 1.00 >More info 1.00 >More info root - 21% oxygen - 30min Original data GEO bulk
2 root - 04% oxygen - 30min 0.92 >More info 0.90 >More info root - 21% oxygen - 30min Original data GEO bulk
3 root - 08% oxygen - 30min 0.80 >More info 0.88 >More info root - 21% oxygen - 30min Original data GEO bulk
4 WT Root Hypoxia 0.80 >More info 0.81 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
5 root - 04% oxygen - 2h 0.76 >More info 0.84 >More info root - 21% oxygen - 2h Original data GEO bulk
6 root - 01% oxygen - 2h 0.74 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
7 root - 04% oxygen - 48h 0.80 >More info 0.74 >More info root - 21% oxygen - 48h Original data GEO bulk
8 root hypoxia total 0.81 >More info 0.71 >More info root control total Original data GEO bulk
9 WT Shoot Hypoxia 0.73 >More info 0.78 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
10 MPK6 ox Root Hypoxia 0.81 >More info 0.65 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
11 Col-0 wt Hypoxic 0.78 >More info 0.67 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
12 shoot hypoxia total 0.76 >More info 0.66 >More info shoot control total Original data GEO bulk
13 root - 08% oxygen - 2h 0.57 >More info 0.83 >More info root - 21% oxygen - 2h Original data GEO bulk
14 MPK6 ox Shoot Hypoxia 0.69 >More info 0.71 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
15 Col-0 2HS 0.80 >More info 0.58 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
16 root - 08% oxygen - 48h 0.65 >More info 0.72 >More info root - 21% oxygen - 48h Original data GEO bulk
17 Aerobic e1 ate2 0.70 >More info 0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
18 Aerobic prt6 0.68 >More info 0.66 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
19 roottip hypoxia total 0.72 >More info 0.59 >More info roottip control total Original data GEO bulk
20 2 hr Hypoxia Total RNA 0.79 >More info 0.43 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
21 mbd11 mutant thaliana 10-day-old seedling 0.72 >More info 0.49 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
22 Heat Recovery 24 h (shoot) 0.49 >More info 0.72 >More info Stress mock 24 h (shoot) Original data Stress treatments
23 Cs root -0.73 >More info -0.47 >More info control root Original data GEO bulk
24 35S:PCO1 hypoxia -0.56 >More info -0.63 >More info WT hypoxia whole rosette Original data
25 iron minus 6 h -0.59 >More info -0.53 >More info iron +6 h root Original data GEO bulk
26 afb3-1 2h KCl -0.67 >More info -0.44 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
27 bri1-116 0.37 >More info 0.73 >More info Col seedling Original data GEO bulk
28 UV Stress 24 h (root) -0.64 >More info -0.45 >More info Stress mock 24 h (root) Original data Stress treatments
29 OE-HRA1 2HS  -0.69 >More info -0.40 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
30 20m.KCl -0.54 >More info -0.54 >More info To. KCl 14 day old Roots Original data GEO bulk
31 root - 01% oxygen - 48h 0.60 >More info 0.45 >More info root - 21% oxygen - 48h Original data GEO bulk
32 2 hr Hypoxia IP RNA 0.71 >More info 0.32 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
33 mdh -0.73 >More info -0.29 >More info Col Original data GEO bulk
34 3.5h KNO3 Whole root -0.47 >More info -0.55 >More info 3.5h KCl control Whole root Whole root Original data GEO bulk
35 9 hr Hypoxia Total RNA 0.75 >More info 0.26 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
36 iron minus 24h -0.67 >More info -0.32 >More info iron +24h root Original data GEO bulk
37 1.5 hr ammonium 0.70 >More info 0.29 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
38 seed germinating in countinuous light 24h SL 0.32 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
39 pepr1-1 Pepr2-3 untreated 0.53 >More info 0.45 >More info WT untreated untreated Original data GEO bulk
40 Light 0.59 >More info 0.38 >More info Control Original data GEO bulk
41 vtc2 mature somatic embryo 0.55 >More info 0.42 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
42 Prohexadione 3 h -0.50 >More info -0.46 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
43 9m.KNO3 -0.57 >More info -0.37 >More info To. KNO3 14 day old Roots Original data GEO bulk
44 Col upon hypoxia 6 hrs 0.76 >More info 0.17 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
45 1.5 hr nitrate 0.63 >More info 0.30 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
46 35S::HRE1 Hypoxic 0.54 >More info 0.38 >More info Col-0 wt Hypoxic hypoxic treatment Original data GEO bulk
47 estradiole-induced ANAC059 -0.55 >More info -0.37 >More info transgenic (empty vector inducible system) Original data GEO bulk
48 siliques AtHb1 control 0.39 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
49 seedlings + TSA 0.58 >More info 0.33 >More info control seedlings 10-day old whole seedling Original data GEO bulk
50 Col-0 low oxygen 0.66 >More info 0.23 >More info Col-0 Original data GEO bulk
51 JMJ24 knockout 0.54 >More info 0.34 >More info WT Original data GEO bulk
52 FHY3p dark+DEX -0.59 >More info -0.29 >More info FHY3p dark+mock Original data GEO bulk
53 Genotoxic Stress 3 h (root) -0.66 >More info -0.21 >More info Stress mock 3 h (root) Original data Stress treatments
54 9 hr Hypoxia IP RNA 0.69 >More info 0.18 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
55 phr1 Root-Pi -0.57 >More info -0.30 >More info WT Root+Pi roots Original data GEO bulk
56 cngc1-3 0.56 >More info 0.30 >More info Col-0 root Original data GEO bulk
57 root longitudinal zone-3 -Fe -0.24 >More info -0.62 >More info root longitudinal zone-3 standard Original data GEO bulk
58 Col BTH 0.18 >More info 0.67 >More info Col rosettes Original data GEO bulk
59 IAA 24h 0.52 >More info 0.32 >More info control 24h root Original data GEO bulk
60 0.2µM SMX -0.61 >More info -0.21 >More info control Whole seedling Original data GEO bulk
61 root callus inducing medium 12 h -0.62 >More info -0.18 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
62 myb3 myb3r4d -0.54 >More info -0.26 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
63 WT roots - Fe -0.30 >More info -0.50 >More info WT roots + Fe Roots Original data GEO bulk
64 HARAP aerobic 0.52 >More info 0.27 >More info WT aerobic aerobic Original data GEO bulk
65 2hr continuous KNO3 and MSX and Gln PeR cell 0.52 >More info 0.26 >More info 2hr continuous KCl and MSX control PeR cell Pericycle root cells Original data GEO bulk
66 9 hr Hypoxia 1 hr recovery IP RNA 0.60 >More info 0.18 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
67 0h ivd -0.22 >More info -0.56 >More info 0h wt Original data
68 Sha-3h IAA -0.69 >More info -0.09 >More info Sha-0h IAA whole plant Original data GEO bulk
69 csn4-1 mutant 0.52 >More info 0.25 >More info WT dark Original data GEO bulk
70 8-DAC chr11-1chr17-1 -0.55 >More info -0.22 >More info 8-DAC Col-0 leaf explants Original data
71 4h decapitation 0.55 >More info 0.22 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
72 TA induced 0.58 >More info 0.18 >More info Methanol TA Suspension cells Original data GEO bulk
73 IRP1-OE-Fe--root -0.63 >More info -0.12 >More info COL-0-Fe--root root Original data
74 Mutant cry1 -0.56 >More info -0.19 >More info Col-0 Original data GEO bulk
75 Stem tissue 5 days NAA 0.56 >More info 0.19 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
76 cry1 low light -0.56 >More info -0.19 >More info Col-O low light Original data GEO bulk
77 Heat shock optimum 0.10 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
78 Leafminer damaged seedlings 0.19 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
79 9 hr Hypoxia 1 hr recovery Total RNA 0.61 >More info 0.13 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
80 Anoxia 0.62 >More info 0.12 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
81 ga1-3/brm-1 0.56 >More info 0.17 >More info wt shoots Original data GEO bulk
82 ckh2 CK0 0.51 >More info 0.22 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
83 cys-c1 root 0.54 >More info 0.19 >More info Root-WT roots Original data GEO bulk
84 roots bhlh100/101 0uM Fe -0.58 >More info -0.15 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
85 Sha-1h IAA -0.60 >More info -0.13 >More info Sha-0h IAA whole plant Original data GEO bulk
86 spx1 spx2 complete -0.53 >More info -0.19 >More info WT complete seedlings Original data
87 mtf1-1 0.65 >More info 0.07 >More info Col0 root Original data
88 35S::RSL4 -0.50 >More info -0.22 >More info Col-0 Control root Original data GEO bulk
89 coi1-2 JA -0.60 >More info -0.12 >More info JA Whole seedling Original data GEO bulk
90 Cambium 5 days NAA 0.50 >More info 0.22 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
91 IAA7mII over-expressor IAA Treated 0.03 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
92 Mutant iaa5_6_19 0.53 >More info 0.18 >More info Col Original data GEO bulk
93 Shoot apex inflorescence (after bolting) 0.06 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
94 ckh1 CK0 0.53 >More info 0.17 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
95 ALC Toc1 light-light Mock -0.60 >More info -0.10 >More info Col light-light Mock no ethanol Original data GEO bulk
96 gun1-9 control 0.60 >More info 0.10 >More info Col-0 control Original data GEO bulk
97 C58 35dpi 0.55 >More info 0.14 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
98 axr2 0.58 >More info 0.11 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
99 tumour 0.50 >More info 0.19 >More info non-tumor tumour Original data GEO bulk
100 roottip control pSCR -0.19 >More info -0.50 >More info roottip control total control roottip Original data GEO bulk
101 WT +elf18 2h -0.51 >More info -0.17 >More info WT untreated elf18 Original data GEO bulk
102 35S::ZAT12 -0.50 >More info -0.18 >More info gl1 Original data GEO bulk
103 Col-0 low oxygen 0.65 >More info 0.02 >More info Col-0 control low oxygen root Original data GEO bulk
104 SCL3 OE -0.66 >More info -0.01 >More info Col-0 whole root Original data GEO bulk
105 Te 3d 0.63 >More info 0.04 >More info Te CA Leaves Original data
106 root callus inducing medium 24h -0.55 >More info -0.12 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
107 dsr1 -0.55 >More info -0.11 >More info WT mock Whole seedling Original data GEO bulk
108 piffq 3d WL 0.51 >More info 0.15 >More info WT 3d WL whole seedling Original data GEO bulk
109 gir flower 33d 0.60 >More info 0.06 >More info Col-7 flower 33d flower Original data GEO bulk
110 Mutant ga1-5 0.58 >More info 0.08 >More info Ler-1 Original data Comparison of plant hormone related mutant
111 RRE2 Chitin 0.53 >More info 0.12 >More info Chitin Original data GEO bulk
112 DMTU 0.51 >More info 0.14 >More info control Original data GEO bulk
113 hog1-7 0.51 >More info 0.14 >More info wt whole seedling Original data GEO bulk
114 Mutant hy5 (High Light) -0.50 >More info -0.15 >More info Col-0 (High Light) Original data GEO bulk
115 hy5 high light -0.50 >More info -0.15 >More info Col-O high light Original data GEO bulk
116 mutant-line774 0.51 >More info 0.14 >More info WT-control whole plant Original data GEO bulk
117 Bay-0-3h IAA -0.65 >More info 0.01 >More info Bay-0-0h IAA whole plant Original data GEO bulk
118 BI-1-30min IAA -0.52 >More info -0.12 >More info BI-1-0h IAA whole plant Original data GEO bulk
119 siliques WT hypoxia 0.63 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
120 myb50 xylem 0.55 >More info 0.09 >More info wt xylem xylem Original data GEO bulk
121 ahg2-1abi1-1 0.50 >More info 0.14 >More info WT (Col) control Original data GEO bulk
122 WT light 0.50 >More info 0.14 >More info WT dark Original data GEO bulk
123 atsf1-2 mutant seedling 0.56 >More info 0.07 >More info Col-0 seedling seedlings Original data
124 P.p 2.5hai 0.63 >More info 0.00 >More info At-Control roots Original data GEO bulk
125 elevated CO2 high Mg root -0.62 >More info -0.01 >More info atmospheric CO2 high Mg root Root Original data
126 gpa1-4/agb1-2 ozone 2d 0.09 >More info 0.54 >More info Col ozone 2d ozone Original data GEO bulk
127 axr2-BR 0.59 >More info 0.03 >More info BR BR dark-grown seedlings Original data GEO bulk
128 lib 0.12 >More info 0.50 >More info WT whole seedling Original data GEO bulk
129 GA3 1 h (ga1) 0.56 >More info 0.05 >More info Mock 1 h (ga1) Original data Basic hormone treatment of seedlings
130 Selenate (root) 0.52 >More info 0.09 >More info Ws (root) Original data GEO bulk
131 Root Selenate 0.52 >More info 0.09 >More info Root control 40 micromolar selenate Root Original data GEO bulk
132 myb50 cork 0.50 >More info 0.11 >More info wt cork cork Original data GEO bulk
133 det2 light-dark -0.59 >More info -0.01 >More info det2 light light-dark Original data GEO bulk
134 ALC Toc1 light-light EtOH -0.60 >More info 0.00 >More info Col light-light EtOH 2.5% ethanol Original data GEO bulk
135 Dark 0.54 >More info 0.04 >More info Control Original data GEO bulk
136 etr1 1% sucrose 12-day-old 0.50 >More info 0.07 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
137 hypoxic 0.53 >More info 0.04 >More info WT aerobic hypoxia Original data GEO bulk
138 WT (Ler) CK200 0.51 >More info 0.06 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
139 Col0-PsmES4326-24hpi -0.04 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
140 Pseudomonas 0.52 >More info 0.04 >More info Control pseudomonas treated whole seedling Original data GEO bulk
141 gun5 control 0.65 >More info -0.10 >More info Col-0 control Original data GEO bulk
142 24h +Pi -0.60 >More info 0.05 >More info 24h -Pi root Original data GEO bulk
143 Tsu -Fe 24h Roots 0.57 >More info -0.02 >More info Tsu +Fe 24h Roots Original data GEO bulk
144 Tsu-1 -Fe 24h 0.57 >More info -0.02 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
145 Laer pretreat GA Flg22 1h -0.16 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
146 hira-root -0.56 >More info 0.02 >More info WT-root root Original data
147 Col-0 root drought 0.53 >More info 0.00 >More info Col-0 root water root Original data GEO bulk
148 cngc1 -0.66 >More info 0.13 >More info Ws-2 Seedlings Original data GEO bulk
149 mp-B4149 mutant IAA 0.50 >More info 0.01 >More info GR-bdl IAA Original data GEO bulk
150 46T-CK -0.51 >More info 0.01 >More info WT-CK none Original data
151 FarRed Light 45min -0.14 >More info 0.63 >More info White Light 45min Original data Light treatments
152 mutant-line409 0.55 >More info -0.08 >More info WT-control whole plant Original data GEO bulk
153 root cells cortex 140mM NaCl 48 hours 0.50 >More info -0.03 >More info root cells cortex standard 1 hour root cells cortex Original data
154 SCR-GR Time 12H Dex 0.53 >More info -0.07 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
155 CCA1-ox 6am non-polysomal -0.05 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
156 ddm1 mutant seedlings -0.52 >More info 0.10 >More info control seedlings 10-day old whole seedling Original data GEO bulk
157 general seed coat linear-cotyledon -0.50 >More info 0.08 >More info whole seeds linear-cotyledon Original data GEO bulk
158 Heat Recovery 24 h (root) -0.27 >More info 0.68 >More info Stress mock 24 h (root) Original data Stress treatments
159 hira-protoplast -0.59 >More info 0.18 >More info WT-protoplast protoplast Original data
160 Laer pretreat JA Flg22 0h 0.17 >More info -0.58 >More info Laer pretreat water control leaf discs Original data GEO bulk
161 P.p 6hai 0.51 >More info -0.11 >More info At-Control roots Original data GEO bulk
162 P35S:rGRF3 0.50 >More info -0.11 >More info WS Original data GEO bulk
163 Mutant axr3-1 0.52 >More info -0.15 >More info Col Original data GEO bulk
164 Tsu-1 -Fe 48h 0.56 >More info -0.23 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
165 Tsu -Fe 48h Roots 0.56 >More info -0.23 >More info Tsu +Fe 24h Roots Original data GEO bulk
166 scl3 0.54 >More info -0.21 >More info Col-0 whole root Original data GEO bulk
167 SA 24h -0.21 >More info 0.54 >More info EtOH 24h 24hr Original data GEO bulk
168 WT 1wk -P 0.51 >More info -0.19 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
169 INA -0.50 >More info 0.28 >More info CK INA seedling Original data
170 PNO8 3 h 0.51 >More info -0.30 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
171 CeO2 germinant -0.61 >More info 0.41 >More info Millipore Water germinant CeO2 seedling Original data
172 ani1 T16 -0.51 >More info 0.46 >More info WT T16 root tissue Original data GEO bulk