4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root callus inducing medium 96 h
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Score Experiment Correlation from
root callus inducing medium 96 h		 Correlation to
root callus inducing medium 96 h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root callus inducing medium 96 h 1.00 >More info 1.00 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
2 root callus inducing medium 48 h 0.90 >More info 0.91 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
3 root callus inducing medium 24h 0.83 >More info 0.87 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
4 root callus inducing medium 12 h 0.75 >More info 0.84 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
5 IAA 24h 0.49 >More info 0.73 >More info control 24h root Original data GEO bulk
6 NAA 6h 0.51 >More info 0.69 >More info before treatment NAA root Original data GEO bulk
7 Col-0 6h NAA 0.50 >More info 0.70 >More info Col-0 6h MOCK Original data GEO bulk
8 IAA 12h 0.52 >More info 0.65 >More info control 12h root Original data GEO bulk
9 IAA 8h 0.51 >More info 0.64 >More info control 8h root Original data GEO bulk
10 rosette Light Wounded -0.45 >More info -0.70 >More info rosette Light Control Original data GEO bulk
11 SHR-GR Time 1H Dex -0.47 >More info -0.66 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
12 IAA 2h 0.44 >More info 0.69 >More info control 2h root Original data GEO bulk
13 flu over-tAPX -0.45 >More info -0.66 >More info WT Col Original data GEO bulk
14 rosette Dark Wounded -0.38 >More info -0.73 >More info rosette Dark Control Original data GEO bulk
15 21h-DC3000 hrpA 0.39 >More info 0.72 >More info 21h-DC3000 leaves Original data GEO bulk
16 root stele -S 0.39 >More info 0.71 >More info root stele pH5.7 Original data GEO bulk
17 Col-0 low oxygen -0.53 >More info -0.56 >More info Col-0 Original data GEO bulk
18 GiantCell Root 0.45 >More info 0.64 >More info Control Root laser captured giant cells Original data GEO bulk
19 auxin and brassinazole seedlings -0.59 >More info -0.50 >More info auxin seedlings Original data GEO bulk
20 ckh1 CK200 -0.48 >More info -0.61 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
21 Chemically 0.46 >More info 0.62 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
22 IAA 4h 0.48 >More info 0.59 >More info control 4h root Original data GEO bulk
23 root epidermis and lateral root cap -S 0.33 >More info 0.72 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
24 Leaf wounded -0.37 >More info -0.68 >More info Leaf control vegetative leaf Original data GEO bulk
25 Col-Luc WT 3h antimycin A -0.47 >More info -0.57 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
26 WT AntimycinA 3h -0.44 >More info -0.60 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
27 GST-overexpression seedlings control -0.45 >More info -0.59 >More info WT seedlings control Seedlings Original data
28 flu -0.42 >More info -0.61 >More info WT Col Original data GEO bulk
29 SA 4mM -0.30 >More info -0.73 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
30 slr-1 6h NAA -0.36 >More info -0.67 >More info Col-0 6h NAA Original data GEO bulk
31 roots IAA 0.39 >More info 0.64 >More info roots mock Original data GEO bulk
32 GiantCell Root 0.53 >More info 0.49 >More info Control Root laser captured giant cells Original data GEO bulk
33 FLIGHT TAGESB plate6 ROOTS -0.34 >More info -0.68 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
34 bZIP1ko mutant N+Light+ -0.46 >More info -0.55 >More info WT-sib N+Light+ whole plant Original data GEO bulk
35 Col-0 2HS -0.35 >More info -0.66 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
36 Differentiation 36h 0.40 >More info 0.61 >More info Differentiation 0h leaves Original data
37 Anoxia -0.29 >More info -0.71 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
38 WT 3H Cold -0.25 >More info -0.75 >More info WT control Original data GEO bulk
39 Rsch 8h -0.35 >More info -0.65 >More info Rsch CA Leaves Original data
40 Protoplast Induced -0.29 >More info -0.70 >More info Uninduced Original data GEO bulk
41 TA induced -0.31 >More info -0.68 >More info Methanol TA Suspension cells Original data GEO bulk
42 Fei-0-3h IAA 0.38 >More info 0.61 >More info Fei-0-0h IAA whole plant Original data GEO bulk
43 low CO2 + light -0.35 >More info -0.64 >More info normal CO2 + light Original data GEO bulk
44 MPK6 ox Shoot Hypoxia -0.43 >More info -0.54 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
45 anac017-1 H2O2 3h 0.43 >More info 0.54 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
46 root stele 40 mM NaCls -0.44 >More info -0.51 >More info root stele Original data GEO bulk
47 SCR 96hr-S 0.35 >More info 0.60 >More info SCR 0hr endodermis Original data
48 anac017-2 AntimycinA 3h 0.39 >More info 0.55 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
49 Shoot apex inflorescence (after bolting) 0.29 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
50 Differentiation 24h 0.37 >More info 0.57 >More info Differentiation 0h leaves Original data
51 WT Shoot-Pi -0.40 >More info -0.53 >More info WT Shoot+Pi shoots Original data GEO bulk
52 Differentiation 48h 0.39 >More info 0.54 >More info Differentiation 0h leaves Original data
53 ABA JA 24h -0.21 >More info -0.72 >More info EtOH 24h 24hr Original data GEO bulk
54 vtc2 day 7 induction 0.43 >More info 0.50 >More info WT day 7 induction day 7 induction of somatic embryogenesis Original data GEO bulk
55 SCR 72hr-S 0.36 >More info 0.57 >More info SCR 0hr endodermis Original data
56 WT H2O2 3h -0.36 >More info -0.56 >More info WT water 3h 3h_H2O2 Original data GEO bulk
57 6h volatiles Sp. HRO-C48 -0.29 >More info -0.63 >More info 6h untreated whole seedling Original data GEO bulk
58 IAA 3 h 0.24 >More info 0.67 >More info Mock 3 h Original data Basic hormone treatment of seedlings
59 OsSAP11 expressing 0.38 >More info 0.53 >More info WT seedlings Original data GEO bulk
60 IAA 1h 0.30 >More info 0.61 >More info control 1h root Original data GEO bulk
61 Wounding Stress3 h (shoot) -0.39 >More info -0.51 >More info Stress mock 3 h (shoot) Original data Stress treatments
62 Seedling-HeatStressed POLYSOMESmRNA -0.30 >More info -0.60 >More info Seedling-control POLYSOMESmRNA seedling Original data
63 SCR-GR Time 1H Dex -0.25 >More info -0.64 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
64 stele auxin 0.37 >More info 0.52 >More info stele control 5 uM indole-3-acetic acid stele Original data GEO bulk
65 21h-DC3000 avrRpm1 0.31 >More info 0.58 >More info 21h-DC3000 leaves Original data GEO bulk
66 35:SUB1C -0.33 >More info -0.55 >More info WT whole seedling Original data GEO bulk
67 9 hr Hypoxia IP RNA -0.34 >More info -0.54 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
68 aox1a:rpoTmp MLD stressed 0.34 >More info 0.54 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
69 2hr continuous KNO3 EPR cell -0.37 >More info -0.51 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
70 myb3 myb3r4d -0.20 >More info -0.67 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
71 intact root auxin 0.31 >More info 0.56 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
72 35S::MBF1c -0.23 >More info -0.64 >More info control Original data GEO bulk
73 Col 8h -0.28 >More info -0.59 >More info Col CA Leaves Original data
74 WT 6H Cold -0.18 >More info -0.68 >More info WT control Original data GEO bulk
75 Col 1d -0.32 >More info -0.54 >More info Col CA Leaves Original data
76 FarRed Light 45min 0.12 >More info 0.74 >More info White Light 45min Original data Light treatments
77 wnk8-2 untreated 0.25 >More info 0.61 >More info Col-0 untreated seedlings Original data GEO bulk
78 root longitudinal zone-1 low sulfur 0.27 >More info 0.59 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
79 SCR-GR Time 12H Dex -0.34 >More info -0.51 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
80 WT flg22 1h -0.29 >More info -0.56 >More info WT 0h Leaf tissue Original data GEO bulk
81 Inflorescences Trp1 0.19 >More info 0.66 >More info Inflorescences ler inflorescences Original data GEO bulk
82 Seedling-HeatStressed TOTALmRNA -0.29 >More info -0.56 >More info Seedling-control TOTALmRNA seedling Original data
83 Heat and anoxia -0.31 >More info -0.53 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
84 SAM SE agl15 agl18 double mutant -0.33 >More info -0.51 >More info SAM SE Col Original data GEO bulk
85 2h KNO3 Whole root -0.33 >More info -0.51 >More info 2h KCl control Whole root Whole root Original data GEO bulk
86 AtLysM RLK1 mutant chitooctaose 0.34 >More info 0.50 >More info WT chitooctaose Original data GEO bulk
87 bri1-116 0.11 >More info 0.73 >More info Col seedling Original data GEO bulk
88 abi1 hypocotyl -0.24 >More info -0.60 >More info Ler hypocotyl hypocotyl Original data GEO bulk
89 cell culture 4 h phytoprostane A1 -0.31 >More info -0.52 >More info cell culture 4 h control Original data GEO bulk
90 axr1 hypocotyl -0.28 >More info -0.55 >More info wt hypocotyl hypocotyl Original data GEO bulk
91 IAA Treated 0.26 >More info 0.57 >More info Negative Control Original data GEO bulk
92 SHR-GR Time 12H Dex 0.32 >More info 0.50 >More info SHR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
93 OXUPB1-2 meristematic zone 0.26 >More info 0.56 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
94 bHLH122 ox 0.20 >More info 0.62 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
95 root protoplasts 40 mM NaCl -0.28 >More info -0.54 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
96 Got7 UV -0.25 >More info -0.57 >More info Got7 mock UV seedling Original data
97 AFB1 flg22 1h -0.25 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
98 Col ozone 3h -0.24 >More info -0.58 >More info Col clean-air 3h ozone Original data GEO bulk
99 WT NAA/flg 1h -0.30 >More info -0.51 >More info WT 0h Leaf tissue Original data GEO bulk
100 IXB induced -0.20 >More info -0.61 >More info Methanol IXB Suspension cells Original data GEO bulk
101 CLO 4mM -0.29 >More info -0.52 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
102 WT+chitooctaose -0.28 >More info -0.53 >More info WT+water chitooctaose seedlings Original data GEO bulk
103 ISOXABEN 0.26 >More info 0.55 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
104 WT-Dry -0.23 >More info -0.58 >More info WT-CK dehydration treatment 1h Original data
105 seed germinating in countinuous light 24h SL 0.13 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
106 2 hr Hypoxia IP RNA -0.30 >More info -0.50 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
107 Rose Bengal 0.5 uM -0.20 >More info -0.60 >More info Control RB and PER Rose Bengal Original data
108 empty vector IAA Treated 0.21 >More info 0.59 >More info empty vector mock Original data GEO bulk
109 miR393 flg22 1h -0.23 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
110 myb61 xylem -0.23 >More info -0.57 >More info wt xylem xylem Original data GEO bulk
111 IAA/inhibitor A Treated -0.27 >More info -0.52 >More info IAA Treated Original data GEO bulk
112 sfr6 drought 0.18 >More info 0.61 >More info WT drought All aerial tissue Original data GEO bulk
113 Atss3 Dark4 0.27 >More info 0.51 >More info Atss3 Dark0.5 Original data GEO bulk
114 wnk8-1 untreated 0.23 >More info 0.55 >More info Col-0 untreated seedlings Original data GEO bulk
115 vtc1-1 0.28 >More info 0.50 >More info Col-0 whole plant Original data GEO bulk
116 ptpks2 0.16 >More info 0.62 >More info Col-WT leaves Original data GEO bulk
117 15m.KNO3 -0.26 >More info -0.52 >More info To. KNO3 14 day old Roots Original data GEO bulk
118 opr3 JA 0.5 h -0.08 >More info -0.70 >More info opr3 0 h Original data GEO bulk
119 wnk8-3 untreated 0.27 >More info 0.50 >More info Col-0 untreated seedlings Original data GEO bulk
120 Dark 0.18 >More info 0.59 >More info Control Original data GEO bulk
121 35S:VND7-VP16-GR+CHX -0.16 >More info -0.61 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
122 Col-0 2h NAA 0.23 >More info 0.54 >More info Col-0 6h MOCK Original data GEO bulk
123 WT seedlings IAA 0.22 >More info 0.55 >More info WT seedlings control Seedlings Original data GEO bulk
124 NJ15 -0.16 >More info -0.61 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
125 shoot-10 μM DEX- 6 hr -0.26 >More info -0.51 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
126 Col-0 (t-zeatin 3 h) 0.22 >More info 0.54 >More info Col-0 Original data Cytokinin treatment of seedlings
127 GST 4 h (leaf) -0.20 >More info -0.56 >More info Mock 4 h (leaf) Original data Elicitor treatments
128 npr1-3 MOCK 48h 0.23 >More info 0.53 >More info Col-0 MOCK 48h Original data GEO bulk
129 dark +H2O2 0.20 >More info 0.56 >More info dark 5 mM H2O2 seedling Original data GEO bulk
130 E2Fa-Dpa 0.24 >More info 0.52 >More info WT Original data GEO bulk
131 aba1 hypocotyl -0.21 >More info -0.55 >More info Ler hypocotyl hypocotyl Original data GEO bulk
132 WT seedlings MV -0.24 >More info -0.52 >More info WT seedlings control Seedlings Original data GEO bulk
133 Red/FR Light45min -0.18 >More info -0.57 >More info FarRed Light 45min Original data Light treatments
134 P.syringae AvrRpt2 4 h (leaf) -0.16 >More info -0.59 >More info Mock 4 h (leaf) Original data Elicitor treatments
135 SCR 48hr-S 0.23 >More info 0.52 >More info SCR 0hr endodermis Original data
136 tunicamycin 0.17 >More info 0.57 >More info DMF Original data GEO bulk
137 gpa1 -ABA GC 0.14 >More info 0.60 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
138 ABA SA 24h -0.01 >More info -0.73 >More info EtOH 24h 24hr Original data GEO bulk
139 pho1 -0.23 >More info -0.51 >More info Col2WT Original data GEO bulk
140 Phaseolicola 2 h (leaf) -0.20 >More info -0.53 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
141 Te 8h -0.21 >More info -0.52 >More info Te CA Leaves Original data
142 pXVE:HA-EDM2-a untreated 0.16 >More info 0.56 >More info Col-0 untreated seedlings Original data GEO bulk
143 vte2-1 1d vernalization -0.16 >More info -0.56 >More info WT 1d vernalization Original data GEO bulk
144 vtc2 mature somatic embryo -0.19 >More info -0.53 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
145 agb1 -ABA LF -0.15 >More info -0.56 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
146 -Sulfate 24 h 0.07 >More info 0.64 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
147 Mutant nph4-1 (IAA) -0.21 >More info -0.50 >More info Col (IAA) Original data GEO bulk
148 Mutant arf2-6 0.21 >More info 0.50 >More info Col Original data GEO bulk
149 sim smr1 0.18 >More info 0.53 >More info WT seedling Original data GEO bulk
150 gun1gun5 far-red pretreated 0.18 >More info 0.53 >More info WT far-red pretreated Original data GEO bulk
151 2hr transitory KNO3 PrR cell -0.20 >More info -0.51 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
152 Roots Cd 0.17 >More info 0.53 >More info Roots control Cd Root Original data GEO bulk
153 WT drought -0.15 >More info -0.55 >More info WT control All aerial tissue Original data GEO bulk
154 hira-protoplast 0.15 >More info 0.55 >More info WT-protoplast protoplast Original data
155 Light 0.5h steady-state -0.20 >More info -0.50 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
156 triploid female excess 0.08 >More info 0.62 >More info tetraploid Original data GEO bulk
157 tetraploid -0.17 >More info -0.52 >More info diploid Original data GEO bulk
158 Methyl Jasmonate 0.5 h -0.17 >More info -0.51 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
159 Col-0 HS -0.17 >More info -0.51 >More info Col-0 control heat shocked seedling Original data GEO bulk
160 WT (Col-0) heat shock -0.17 >More info -0.51 >More info WT (Col-0) whole seedling Original data GEO bulk
161 Stem tissue 2 days NAA 0.12 >More info 0.55 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
162 SA 24h -0.03 >More info -0.64 >More info EtOH 24h 24hr Original data GEO bulk
163 WT (Col) glucose 0.17 >More info 0.50 >More info WT (Col) glucose seedlings Original data GEO bulk
164 dark-hs -0.15 >More info -0.51 >More info dark-control seedling Original data
165 L2.5 mutant -0.08 >More info -0.58 >More info Wt Original data GEO bulk
166 JA 24h -0.13 >More info -0.51 >More info EtOH 24h 24hr Original data GEO bulk
167 3x(m) 0.04 >More info -0.68 >More info 2x two week old seedlings Original data
168 3x(p) -0.07 >More info -0.56 >More info 2x two week old seedlings Original data
169 Laer Flg22(Agrobacterium) 2h 0.12 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
170 4C 2h(SOIL) -0.10 >More info -0.53 >More info 4C 0h(SOIL) Original data GEO bulk
171 WT 30μM phosphate 8 hours. 0.08 >More info 0.55 >More info WT control (not supplemented). Original data
172 IAA7mII over-expressor IAA Treated -0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
173 desiccated mature pollen grains 0.07 >More info 0.53 >More info hydrated pollen grains Original data GEO bulk
174 Col BTH -0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
175 seedling -S Exp -0.07 >More info 0.65 >More info seedling FN Exp seedling Original data
176 ex1 flu dark 8hours/30 minute light 0.00 >More info -0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
177 whole roots 140 mM NaCl 30 minutes -0.06 >More info -0.50 >More info whole roots standard Original data GEO bulk
178 root longitudinal zone-1 -Fe 0.01 >More info -0.57 >More info root longitudinal zone-1 standard Original data GEO bulk
179 red illumination +lincomycin -0.03 >More info 0.58 >More info red illumination -lincomycin Original data GEO bulk
180 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
181 Heat shock optimum -0.13 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
182 Laer pretreat GA Flg22 1h -0.21 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
183 Blue Light 45 min -0.03 >More info 0.51 >More info White Light 45min Original data Light treatments
184 siliques AtHb1 control -0.10 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
185 GA 120min 0.13 >More info -0.53 >More info CON120 GA 120 min. root tips Original data GEO bulk
186 Leafminer damaged seedlings -0.31 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
187 Col0-PsmES4326-24hpi -0.38 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk