4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on WT(Ler) Rc15
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List of experiments correlated with "WT(Ler) Rc15"  Help Download transcriptome of top 30
Score Experiment Correlation from
WT(Ler) Rc15		 Correlation to
WT(Ler) Rc15		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 WT(Ler) Rc15 1.00 >More info 1.00 >More info WT(Ler) Dark Original data GEO bulk
2 WT Rc50 0.95 >More info 0.94 >More info WT Dark red light whole seedling Original data GEO bulk
3 WT(Ler) Rc50 0.95 >More info 0.94 >More info WT(Ler) Dark Original data GEO bulk
4 phyAphyB Dark -0.88 >More info -0.88 >More info phyB Dark Original data GEO bulk
5 phyB Dark 0.88 >More info 0.87 >More info WT(Ler) Dark Original data GEO bulk
6 etiolated cop1BBX22-GFPox 0.80 >More info 0.80 >More info etiolated Col-0 whole seedlings Original data GEO bulk
7 Light 4h polysome-bound 0.74 >More info 0.76 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
8 Light 4h steady-state 0.73 >More info 0.76 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
9 WT Red light 18h 0.77 >More info 0.65 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
10 CabpBVR2 -0.68 >More info -0.71 >More info WT Original data GEO bulk
11 WT light 0.72 >More info 0.66 >More info WT dark Original data GEO bulk
12 35SpBVR3 -0.66 >More info -0.70 >More info WT Original data GEO bulk
13 Dark 4 h pls UV-A 5 min 0.60 >More info 0.73 >More info Dark 4 h Original data Light treatments
14 pif4pif5 mut 24h FR 0.64 >More info 0.69 >More info WT 24h FR Original data GEO bulk
15 Dark 4 h pls RedLight 1min 0.55 >More info 0.76 >More info Dark 4 h Original data Light treatments
16 WT Seedling BL 0.66 >More info 0.64 >More info WT Seedling Dark Original data GEO bulk
17 bri1-116 0.55 >More info 0.73 >More info Col seedling Original data GEO bulk
18 cop1 Seedling Dark 0.62 >More info 0.61 >More info WT Seedling Dark Original data GEO bulk
19 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.75 >More info 0.48 >More info 2d dark-grown WT seedling Original data GEO bulk
20 2d dark-grown WT(Col-0)/1 hr red light 0.59 >More info 0.63 >More info 2d dark-grown WT seedling Original data GEO bulk
21 WT Red light 1h 0.60 >More info 0.62 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
22 Dark 4 h pls UV-AB 5min 0.64 >More info 0.58 >More info Dark 4 h Original data Light treatments
23 aerial organ callus inducing medium 96 h -0.63 >More info -0.59 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
24 csn5 (csn5a-2 csn5b) dark 0.65 >More info 0.52 >More info WT dark Original data GEO bulk
25 Col-0 low oxygen -0.64 >More info -0.51 >More info Col-0 Original data GEO bulk
26 Light 0.5h polysome-bound 0.48 >More info 0.67 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
27 csn4-1 mutant 0.64 >More info 0.50 >More info WT dark Original data GEO bulk
28 csn3-1 dark 0.62 >More info 0.51 >More info WT dark Original data GEO bulk
29 Dark 44min pls RedLigh 1min 0.47 >More info 0.66 >More info Dark 45 min Original data Light treatments
30 aerial organ callus inducing medium 12 h -0.56 >More info -0.56 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
31 aerial organ callus inducing medium 48 h -0.59 >More info -0.52 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
32 low R/FR mock spray -0.53 >More info -0.57 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
33 Dark 40 min pls UV-A 5 min 0.45 >More info 0.64 >More info Dark 45 min Original data Light treatments
34 aerial organ callus inducing medium 24h -0.57 >More info -0.52 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
35 atmyc2 cop1 Seedling Dark 0.59 >More info 0.49 >More info WT Seedling Dark Original data GEO bulk
36 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.68 >More info 0.39 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
37 phr1 Shoot-Pi 0.66 >More info 0.40 >More info WT Root-Pi shoots Original data GEO bulk
38 CCA14 dark late -0.57 >More info -0.49 >More info Col dark late Original data GEO bulk
39 low R/FR JA spray -0.55 >More info -0.51 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
40 piffq FR 3h 0.43 >More info 0.63 >More info WT FR 3h whole seedling Original data GEO bulk
41 pif4pif5 mut 1h FR 0.47 >More info 0.58 >More info WT 1h FR Original data GEO bulk
42 DC3000 7h -0.52 >More info -0.52 >More info Mock 7h DC3000 Original data GEO bulk
43 Light 0.5h steady-state 0.38 >More info 0.66 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
44 pif3 Dark 0h 0.62 >More info 0.40 >More info WT Dark 0h etiolated seedling Original data GEO bulk
45 phr1 phl1 Root-Pi -0.64 >More info -0.38 >More info WT Shoot+Pi roots Original data GEO bulk
46 phyABDE Rc50 0.44 >More info 0.58 >More info phyABDE Dark red light whole seedling Original data GEO bulk
47 col-5 DC3000 12h -0.45 >More info -0.57 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
48 col-5 hrpA 12h -0.47 >More info -0.53 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
49 Col-0 shade -0.49 >More info -0.51 >More info Col-0 light seedlings Original data GEO bulk
50 pif3 Dark 1h 0.56 >More info 0.41 >More info WT Dark 1h etiolated seedling Original data GEO bulk
51 Red/FR Light 4 h -0.40 >More info -0.56 >More info FarRed Light 4 h Original data Light treatments
52 Col-0 Root 100 mM ATP 30 min 0.58 >More info 0.37 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
53 petiole in FRD -0.52 >More info -0.43 >More info petiole in WL petioles Original data GEO bulk
54 2d red light grown pif1pif3pif4pif5 (pifq) mutant 0.59 >More info 0.36 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
55 FarRed Light 45min -0.33 >More info -0.62 >More info White Light 45min Original data Light treatments
56 Aerobic prt6 -0.36 >More info -0.59 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
57 Red Light 45min -0.30 >More info -0.64 >More info White Light 45min Original data Light treatments
58 Seedling KUA1-IOX est -0.33 >More info -0.61 >More info Seedling KUA1-IOX mock Original data
59 35S:VND7-VP16-GR+CHX -0.35 >More info -0.56 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
60 Col-0 low R/FR -0.35 >More info -0.56 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
61 2hr continuous KNO3 ECR cell -0.37 >More info -0.54 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
62 miR393 0h 0.41 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
63 E.coli 0157 H7 7h -0.32 >More info -0.59 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
64 Laer pretreat GA+JA Flg22 1h -0.54 >More info -0.36 >More info Laer pretreat water control leaf discs Original data GEO bulk
65 Laer pretreat GA+JA Flg22 2h -0.53 >More info -0.37 >More info Laer pretreat water control leaf discs Original data GEO bulk
66 gul2-1 mutant -0.65 >More info -0.19 >More info WT 7 day-old whole seedlings Original data
67 CLO 4mM -0.33 >More info -0.51 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
68 erf104-ko Flg22 4h -0.51 >More info -0.32 >More info erf104-ko H2O 4h Original data GEO bulk
69 FarRed Light 4 h 0.27 >More info 0.56 >More info White Light 4 h Original data Light treatments
70 etiolated cop1 0.78 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
71 Laer pretreat GA+JA Flg22 0h -0.51 >More info -0.30 >More info Laer pretreat water control leaf discs Original data GEO bulk
72 AtLysM RLK1 mutant water 0.58 >More info 0.23 >More info WT water Original data GEO bulk
73 Blue Light 4 h 0.17 >More info 0.63 >More info White Light 4 h Original data Light treatments
74 8h-DC3000 hrpA -0.23 >More info -0.57 >More info 8h-DC3000 leaves Original data GEO bulk
75 Col-7 Sucrose -0.51 >More info -0.28 >More info col-7 Original data GEO bulk
76 IAA 1 h -0.28 >More info -0.51 >More info Mock 1 h Original data Basic hormone treatment of seedlings
77 gun1-1 +lincomycin 0.23 >More info 0.56 >More info Col-0 +lincomycin Original data GEO bulk
78 SCL3 OE -0.55 >More info -0.23 >More info Col-0 whole root Original data GEO bulk
79 Shoot apex inflorescence (after bolting) 0.13 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
80 Botrytis cinerea 48h -0.50 >More info -0.27 >More info control 48h Original data GEO bulk
81 WT (Ler) CK25 0.23 >More info 0.54 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
82 Hypoxic e1 ate -0.17 >More info -0.56 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
83 Hypoxic prt6 -0.23 >More info -0.50 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
84 Col leaf scrape 5 dpi -0.56 >More info -0.16 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
85 TNT-seedlings -0.11 >More info -0.61 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
86 Cs shoot -0.13 >More info -0.59 >More info control shoot Original data GEO bulk
87 Chemically -0.18 >More info -0.54 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
88 piffq FR 1h 0.14 >More info 0.57 >More info WT FR 1h whole seedling Original data GEO bulk
89 Col-0 35S:MBS1 HL 3h 0.19 >More info 0.52 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
90 gul2-1 bri1-5 mutant -0.62 >More info -0.08 >More info WT 7 day-old whole seedlings Original data
91 gun1gun5 Norflurazon 0.19 >More info 0.51 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
92 Differentiation 48h -0.54 >More info -0.14 >More info Differentiation 0h leaves Original data
93 seed germinating in countinuous light 24h SL 0.01 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
94 IAA7mII over-expressor IAA Treated -0.02 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
95 phyABDE Dark 0.14 >More info 0.52 >More info WT Dark Dark whole seedling Original data GEO bulk
96 Differentiation 36h -0.53 >More info -0.12 >More info Differentiation 0h leaves Original data
97 pif5 high R/FR 0.13 >More info 0.52 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
98 piffq 2d WL -0.03 >More info 0.66 >More info WT 2d WL whole seedling Original data GEO bulk
99 akt1-1 -0.13 >More info -0.50 >More info Ws-2 Seedlings Original data GEO bulk
100 MPK6 ox Shoot Hypoxia 0.09 >More info -0.67 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
101 light 0.75 >More info -0.18 >More info dark light seedling Original data GEO bulk
102 35S::ERF104 H2O 4h 0.51 >More info 0.06 >More info Col-0 H2O 4h Original data GEO bulk
103 CCA1-ox 6am non-polysomal 0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
104 WT roots - Fe -0.05 >More info -0.50 >More info WT roots + Fe Roots Original data GEO bulk
105 siliques AtHb1 control -0.02 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
106 ACN1-2 Sucrose 0.09 >More info -0.58 >More info Col-7 Sucrose Original data GEO bulk
107 pab polysome -0.07 >More info 0.53 >More info WT polysome seedling shoot/aerial seedling Original data
108 Col BTH -0.27 >More info 0.67 >More info Col rosettes Original data GEO bulk
109 dorn1-1 Root 100 mM ATP 30 min -0.51 >More info 0.12 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
110 myb3 myb3r4d 0.14 >More info -0.51 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
111 Heat shock optimum -0.33 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
112 ABA control -0.34 >More info 0.55 >More info No ABA control Original data GEO bulk
113 Leafminer damaged seedlings -0.36 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
114 Laer pretreat GA Flg22 1h -0.52 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
115 Col0-PsmES4326-24hpi -0.43 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk