4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Light 4h steady-state
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List of experiments correlated with "Light 4h steady-state"  Help Download transcriptome of top 30
Score Experiment Correlation from
Light 4h steady-state		 Correlation to
Light 4h steady-state		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Light 4h steady-state 1.00 >More info 1.00 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
2 Light 4h polysome-bound 0.96 >More info 0.96 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
3 WT Red light 18h 0.85 >More info 0.84 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
4 Red/FR Light 4 h -0.78 >More info -0.85 >More info FarRed Light 4 h Original data Light treatments
5 2d dark-grown WT(Col-0)/1 hr red light 0.80 >More info 0.82 >More info 2d dark-grown WT seedling Original data GEO bulk
6 WT Red light 1h 0.79 >More info 0.82 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
7 etiolated cop1BBX22-GFPox 0.80 >More info 0.78 >More info etiolated Col-0 whole seedlings Original data GEO bulk
8 Dark 4 h pls UV-AB 5min 0.79 >More info 0.79 >More info Dark 4 h Original data Light treatments
9 Dark 4 h pls RedLight 1min 0.74 >More info 0.81 >More info Dark 4 h Original data Light treatments
10 WT(Ler) Rc50 0.78 >More info 0.77 >More info WT(Ler) Dark Original data GEO bulk
11 Dark 4 h pls UV-A 5 min 0.75 >More info 0.78 >More info Dark 4 h Original data Light treatments
12 phyB Dark 0.75 >More info 0.77 >More info WT(Ler) Dark Original data GEO bulk
13 FarRed Light 4 h 0.67 >More info 0.84 >More info White Light 4 h Original data Light treatments
14 Red Light 4 h -0.70 >More info -0.81 >More info White Light 4 h Original data Light treatments
15 phyAphyB Dark -0.74 >More info -0.76 >More info phyB Dark Original data GEO bulk
16 Light 0.5h polysome-bound 0.67 >More info 0.82 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
17 WT(Ler) Rc15 0.76 >More info 0.73 >More info WT(Ler) Dark Original data GEO bulk
18 WT Rc50 0.76 >More info 0.73 >More info WT Dark red light whole seedling Original data GEO bulk
19 Dark 40 min pls UV-A 5 min 0.66 >More info 0.82 >More info Dark 45 min Original data Light treatments
20 Shoot dark control 7h -0.74 >More info -0.73 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
21 Shoot dark control 24h -0.73 >More info -0.74 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
22 Light 0.5h steady-state 0.65 >More info 0.82 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
23 Dark 44min pls RedLigh 1min 0.64 >More info 0.82 >More info Dark 45 min Original data Light treatments
24 Day Time Treatment 0.73 >More info 0.71 >More info Day Time Control 1hr white light pulse aerial rosette Original data
25 Shoot submergence 24h -0.72 >More info -0.72 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
26 Blue Light 4 h 0.59 >More info 0.85 >More info White Light 4 h Original data Light treatments
27 aerial organ callus inducing medium 12 h -0.74 >More info -0.68 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
28 35SpBVR3 -0.72 >More info -0.70 >More info WT Original data GEO bulk
29 Dark 40min pls UV-AB 5min 0.67 >More info 0.75 >More info Dark 45 min Original data Light treatments
30 aerial organ callus inducing medium 96 h -0.69 >More info -0.71 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
31 petiole in FRD -0.71 >More info -0.68 >More info petiole in WL petioles Original data GEO bulk
32 aerial organ callus inducing medium 48 h -0.72 >More info -0.67 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
33 csn3-1 dark 0.79 >More info 0.60 >More info WT dark Original data GEO bulk
34 WT Seedling BL 0.69 >More info 0.70 >More info WT Seedling Dark Original data GEO bulk
35 csn5 (csn5a-2 csn5b) dark 0.79 >More info 0.58 >More info WT dark Original data GEO bulk
36 csn4-1 mutant 0.78 >More info 0.59 >More info WT dark Original data GEO bulk
37 WT hypoxia -0.69 >More info -0.67 >More info WT normoxia whole rosette Original data
38 aerial organ callus inducing medium 24h -0.71 >More info -0.64 >More info aerial organ callus inducing medium 0 h 24 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
39 Night Time Treatment 0.65 >More info 0.68 >More info Night Time Control 1hr white light pulse aerial rosette Original data
40 WT light 0.67 >More info 0.66 >More info WT dark Original data GEO bulk
41 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.67 >More info 0.66 >More info 2d dark-grown WT seedling Original data GEO bulk
42 pif4pif5 mut 1h FR 0.72 >More info 0.60 >More info WT 1h FR Original data GEO bulk
43 seedling 1.5h after HZE atm-1 -0.61 >More info -0.70 >More info seedling day 1 unirradiated atm-1 1.5h Original data
44 low CO2 + dark -0.59 >More info -0.72 >More info normal CO2 + light Original data GEO bulk
45 piffq FR 3h 0.65 >More info 0.64 >More info WT FR 3h whole seedling Original data GEO bulk
46 pif4pif5 mut 24h FR 0.63 >More info 0.64 >More info WT 24h FR Original data GEO bulk
47 seedling 24h after Gamma atm-1 0.60 >More info 0.67 >More info seedling day 2 unirradiated atm-1 24h Original data
48 Col-0 WT HL 3h 0.64 >More info 0.62 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
49 seedling 24h after Gamma WT 0.59 >More info 0.67 >More info seedling day 2 unirradiated WT 24h Original data
50 Col-0 DCA 6d -0.62 >More info -0.63 >More info Col-0 MOCK 6d Original data GEO bulk
51 erf104-ko H2O 4h 0.68 >More info 0.57 >More info Col-0 H2O 4h Original data GEO bulk
52 CabpBVR2 -0.63 >More info -0.61 >More info WT Original data GEO bulk
53 phyABDE Rc50 0.57 >More info 0.66 >More info phyABDE Dark red light whole seedling Original data GEO bulk
54 Col-0 +lincomycin -0.58 >More info -0.64 >More info Col-0 -lincomycin Original data GEO bulk
55 FarRed Light 45min -0.45 >More info -0.77 >More info White Light 45min Original data Light treatments
56 low R/FR JA spray -0.62 >More info -0.58 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
57 leaf blade in FRD -0.61 >More info -0.59 >More info leaf blade in WL leaf blades Original data GEO bulk
58 rGRF3x35S:GIF -0.56 >More info -0.63 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
59 Dark 6h ivd -0.64 >More info -0.54 >More info 0h ivd Original data
60 MYB12OX/tt4 -0.57 >More info -0.60 >More info Col-0 aerial part Original data
61 MIL4 ox -0.62 >More info -0.55 >More info Col Original data GEO bulk
62 Col-0 low oxygen -0.60 >More info -0.56 >More info Col-0 Original data GEO bulk
63 seedling 1.5h after HZE WT -0.57 >More info -0.59 >More info seedling day 1 unirradiated WT 1.5h Original data
64 tt4 -0.57 >More info -0.59 >More info Col-0 aerial part Original data
65 camta1-2 -0.59 >More info -0.57 >More info Col-0-WT Original data GEO bulk
66 gun1-1 +lincomycin 0.50 >More info 0.65 >More info Col-0 +lincomycin Original data GEO bulk
67 Col-0 DEX Shade -0.66 >More info -0.49 >More info Col-0 DEX WL seedlings Original data
68 Dark 1day wt -0.65 >More info -0.50 >More info 0h wt Original data
69 Dark 1day ivd -0.63 >More info -0.50 >More info 0h ivd Original data
70 Dark 1day hml -0.64 >More info -0.49 >More info 0h hml Original data
71 1 h Light Total RNA 0.54 >More info 0.59 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
72 ptpks2 0.49 >More info 0.64 >More info Col-WT leaves Original data GEO bulk
73 bri1-116 0.39 >More info 0.73 >More info Col seedling Original data GEO bulk
74 essp3/brm5 mutant 0.61 >More info 0.50 >More info WT (Pro-beta-CG;GUS) Original data GEO bulk
75 30m light 0.58 >More info 0.53 >More info before light whole seedlings Original data GEO bulk
76 Red Light 45min -0.42 >More info -0.69 >More info White Light 45min Original data Light treatments
77 low R/FR mock spray -0.50 >More info -0.60 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
78 Dark 2day wt -0.60 >More info -0.50 >More info 0h wt Original data
79 Dark 6h wt -0.66 >More info -0.44 >More info 0h wt Original data
80 Pseudomonas -0.47 >More info -0.63 >More info Control pseudomonas treated whole seedling Original data GEO bulk
81 Dark 6h hml -0.66 >More info -0.43 >More info 0h hml Original data
82 det2 light-dark -0.59 >More info -0.50 >More info det2 light light-dark Original data GEO bulk
83 Col-0 INA 6d -0.59 >More info -0.50 >More info Col-0 MOCK 6d Original data GEO bulk
84 Col-0 C2H4 24h -0.58 >More info -0.51 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
85 IAA 3 h -0.55 >More info -0.53 >More info Mock 3 h Original data Basic hormone treatment of seedlings
86 petiole in D -0.53 >More info -0.55 >More info petiole in WL petioles Original data GEO bulk
87 Col-0 shade -0.51 >More info -0.57 >More info Col-0 light seedlings Original data GEO bulk
88 cop1 Seedling BL+ABA 0.51 >More info 0.56 >More info WT Seedling BL+ABA Original data GEO bulk
89 cop1 Seedling Dark 0.52 >More info 0.54 >More info WT Seedling Dark Original data GEO bulk
90 CCA14 dark late -0.56 >More info -0.50 >More info Col dark late Original data GEO bulk
91 pap1-D/tt4 -0.52 >More info -0.54 >More info Col-0 aerial part Original data
92 col-5 hrpA 12h -0.50 >More info -0.56 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
93 CHLM overexpression 0.51 >More info 0.55 >More info Col-0 estr green tissue Original data GEO bulk
94 mutant acs9B (single mutant) -0.59 >More info -0.46 >More info col control (single mutant) Original data GEO bulk
95 shl-2 Pool -0.51 >More info -0.54 >More info Ler Pool seedling Original data GEO bulk
96 abi4-102 -lincomycin -0.58 >More info -0.47 >More info Col-0 -lincomycin Original data GEO bulk
97 Dark 3day wt -0.58 >More info -0.46 >More info 0h wt Original data
98 60m light 0.47 >More info 0.57 >More info before light whole seedlings Original data GEO bulk
99 35S::ERF104 H2O 4h 0.65 >More info 0.38 >More info Col-0 H2O 4h Original data GEO bulk
100 oas-a1.1 root 0.32 >More info 0.70 >More info WT-Untreated Root Original data GEO bulk
101 col-5 DC3000 12h -0.45 >More info -0.56 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
102 1 h Light IP RNA 0.45 >More info 0.55 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
103 gun1gun5 Norflurazon 0.48 >More info 0.52 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
104 Dark 3day hml -0.55 >More info -0.44 >More info 0h hml Original data
105 IAA 1 h -0.41 >More info -0.58 >More info Mock 1 h Original data Basic hormone treatment of seedlings
106 mil4 sid2 -0.49 >More info -0.50 >More info Col rosettes Original data GEO bulk
107 ga1-3 SCL3OE 0.53 >More info 0.45 >More info ga1-3 whole root Original data
108 A2hsfa1-ox in quadruple mutant 0.43 >More info 0.55 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
109 mutant acs2C (single mutant) -0.52 >More info -0.45 >More info col control (single mutant) Original data GEO bulk
110 edr1 36 h powdery mildew -0.53 >More info -0.44 >More info Col-0 36 h powdery mildew Original data GEO bulk
111 pif4pif5 mut dark 0.46 >More info 0.51 >More info WT dark Original data GEO bulk
112 sfr2 control 0.41 >More info 0.56 >More info WT control All aerial tissue Original data GEO bulk
113 Dark 2day hml -0.56 >More info -0.40 >More info 0h hml Original data
114 hepta mutant (higher order mutant) -0.54 >More info -0.42 >More info col control (higher order mutant) Original data GEO bulk
115 MIL4 ox BTH -0.54 >More info -0.42 >More info Col BTH Original data GEO bulk
116 gul2-1 bri1-5 mutant -0.58 >More info -0.37 >More info WT 7 day-old whole seedlings Original data
117 phr1 Shoot-Pi 0.45 >More info 0.50 >More info WT Root-Pi shoots Original data GEO bulk
118 essp4/sdg8-5 mutant 0.52 >More info 0.42 >More info wild type leaf Original data GEO bulk
119 sdg8-2 mutant 0.53 >More info 0.41 >More info wild type leaf Original data GEO bulk
120 WT-Dry 0.55 >More info 0.38 >More info WT-CK dehydration treatment 1h Original data
121 WT 90-105 min Xanthomonas 0.50 >More info 0.43 >More info WT T0 Original data GEO bulk
122 eto1-4 -0.53 >More info -0.39 >More info Col-0 whole seedling Original data GEO bulk
123 detached inflorescences 24h -0.50 >More info -0.42 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
124 rGRF -0.54 >More info -0.37 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
125 lht1 untreated 0.51 >More info 0.40 >More info WT untreated untreated leaf Original data GEO bulk
126 swn-7 -0.56 >More info -0.35 >More info Col whole plant Original data GEO bulk
127 high-R:FR bud axillary 0.38 >More info 0.53 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
128 2hr continuous KNO3 ECR cell -0.38 >More info -0.53 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
129 Dark 3day ivd -0.52 >More info -0.38 >More info 0h ivd Original data
130 aba2 1% sucrose 12-day-old -0.54 >More info -0.36 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
131 Col-0 5dpi 0.37 >More info 0.53 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
132 mbd6 mutant thaliana 10-day-old seedling -0.51 >More info -0.38 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
133 fls1-3 -0.51 >More info -0.37 >More info Col-0 Rosette leaves Original data
134 AtLysM RLK1 mutant water 0.57 >More info 0.31 >More info WT water Original data GEO bulk
135 Shoot apex inflorescence (after bolting) 0.21 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
136 Estradiol4 days -0.36 >More info -0.50 >More info Col Original data GEO bulk
137 estradiol induced LEC1 -0.36 >More info -0.50 >More info control Original data GEO bulk
138 sid2-2 mock 0.51 >More info 0.34 >More info Col0 mock DMSO control rosette leaves Original data GEO bulk
139 seedlings protease IV -0.55 >More info -0.30 >More info seedlings nontreated control whole seedling Original data
140 Bay-0-3h IAA -0.50 >More info -0.34 >More info Bay-0-0h IAA whole plant Original data GEO bulk
141 GR-bdl DEX IAA 0.30 >More info 0.54 >More info GR-bdl IAA Original data GEO bulk
142 Col-0 low R/FR -0.30 >More info -0.54 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
143 Seedling KUA1-IOX est -0.34 >More info -0.50 >More info Seedling KUA1-IOX mock Original data
144 3x(p) -0.30 >More info -0.54 >More info 2x two week old seedlings Original data
145 Whole root - S 3H 0.33 >More info 0.50 >More info Whole root - S 0H Original data GEO bulk
146 E.coli 0157 H7 7h -0.33 >More info -0.50 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
147 C24-3h IAA -0.54 >More info -0.28 >More info C24-0h IAA whole plant Original data GEO bulk
148 seed germinating in countinuous light 24h SL 0.15 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
149 4h decapitation 0.22 >More info 0.60 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
150 rosette leaves fdh -0.53 >More info -0.28 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
151 Laer pretreat JA Flg22 2h -0.50 >More info -0.31 >More info Laer pretreat water control leaf discs Original data GEO bulk
152 erf104-ko Flg22 4h -0.58 >More info -0.23 >More info erf104-ko H2O 4h Original data GEO bulk
153 root longitudinal zone-2 -Fe -0.29 >More info -0.51 >More info root longitudinal zone-2 standard Original data GEO bulk
154 ahg2-1sid2-2 0.58 >More info 0.20 >More info WT (Col) control Original data GEO bulk
155 etiolated cop1 0.73 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
156 Col-0 (t-zeatin 3 h) 0.27 >More info 0.50 >More info Col-0 Original data Cytokinin treatment of seedlings
157 IAA 0.5 h -0.21 >More info -0.55 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
158 WT (Ler) CK25 0.19 >More info 0.56 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
159 irradiated leaf (WT 5d) 0.14 >More info 0.61 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
160 atmospheric CO2 low Mg shoot -0.50 >More info -0.24 >More info atmospheric CO2 normal Mg shoot Shoot Original data
161 Col-0 DCA 48h 0.54 >More info 0.19 >More info Col-0 MOCK 48h Original data GEO bulk
162 WT (Col) glucose 0.15 >More info 0.58 >More info WT (Col) glucose seedlings Original data GEO bulk
163 NJ15 0.15 >More info 0.58 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
164 gai Control -0.51 >More info -0.21 >More info Laer Control leaf discs Original data GEO bulk
165 Shoot submergence 7h -0.70 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
166 IAA7mII over-expressor IAA Treated -0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
167 phosphate-starved -0.15 >More info -0.51 >More info control shoot tissue Original data GEO bulk
168 short 17-degree- 0.08 >More info 0.58 >More info control short Original data GEO bulk
169 WT zebularine 5d 0.52 >More info 0.09 >More info WT mock 5d shoot apical meristem Original data
170 seedling 3h after HZE WT -0.63 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
171 Dark 2day ivd -0.58 >More info -0.01 >More info 0h ivd Original data
172 light 0.76 >More info -0.18 >More info dark light seedling Original data GEO bulk
173 21h-DC3000 avrRpm1 0.08 >More info 0.50 >More info 21h-DC3000 leaves Original data GEO bulk
174 35S:GIF -0.56 >More info -0.00 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
175 abh1 -ABA -0.04 >More info -0.51 >More info Col-0 -ABA Original data GEO bulk
176 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
177 siliques AtHb1 control -0.14 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
178 Col BTH -0.34 >More info 0.67 >More info Col rosettes Original data GEO bulk
179 Col0-PsmES4326-24hpi -0.34 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
180 Heat shock optimum -0.43 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
181 Laer pretreat GA Flg22 1h -0.52 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
182 Leafminer damaged seedlings -0.43 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk