4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Col-0 shade
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List of experiments correlated with "Col-0 shade"  Help Download transcriptome of top 30
Score Experiment Correlation from
Col-0 shade		 Correlation to
Col-0 shade		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Col-0 shade 1.00 >More info 1.00 >More info Col-0 light seedlings Original data GEO bulk
2 low R/FR JA spray 0.75 >More info 0.77 >More info high R/FR JA spray low R/FR JA spray Original data GEO bulk
3 Col-0 low R/FR 0.80 >More info 0.71 >More info Col-0 high R/FR low R/FR seedlings Original data GEO bulk
4 low R/FR mock spray 0.72 >More info 0.78 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
5 WT hypoxia 0.82 >More info 0.67 >More info WT normoxia whole rosette Original data
6 IAA 1 h 0.70 >More info 0.78 >More info Mock 1 h Original data Basic hormone treatment of seedlings
7 petiole in FRD 0.80 >More info 0.67 >More info petiole in WL petioles Original data GEO bulk
8 leaf blade in FRD 0.80 >More info 0.66 >More info leaf blade in WL leaf blades Original data GEO bulk
9 shl-2 Pool 0.78 >More info 0.67 >More info Ler Pool seedling Original data GEO bulk
10 GR-bdl DEX IAA -0.65 >More info -0.77 >More info GR-bdl IAA Original data GEO bulk
11 Col-0 DEX Shade 0.85 >More info 0.55 >More info Col-0 DEX WL seedlings Original data
12 WT NAA 1h 0.59 >More info 0.80 >More info WT 0h Leaf tissue Original data GEO bulk
13 WT NAA 2h 0.58 >More info 0.81 >More info WT 0h Leaf tissue Original data GEO bulk
14 downy mildew cotyledons early stage -0.77 >More info -0.58 >More info mock inoculated Cotyledons Original data GEO bulk
15 IAA 0.5 h 0.63 >More info 0.71 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
16 Col-0 Mock Shade 0.82 >More info 0.50 >More info Col-0 Mock WL seedlings Original data
17 IAA 3 h 0.68 >More info 0.63 >More info Mock 3 h Original data Basic hormone treatment of seedlings
18 pif5 high R/FR -0.73 >More info -0.57 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
19 PIF5ox low R/FR -0.80 >More info -0.47 >More info Col-0 low R/FR low R/FR seedlings Original data GEO bulk
20 6h volatiles Sp. HRO-C48 0.74 >More info 0.51 >More info 6h untreated whole seedling Original data GEO bulk
21 sav3-2 shade -0.55 >More info -0.70 >More info Col-0 shade seedlings Original data GEO bulk
22 Mutant sav3-2 (SH) -0.55 >More info -0.70 >More info Col-0 (SH) Original data GEO bulk
23 CCA14 dark late 0.76 >More info 0.46 >More info Col dark late Original data GEO bulk
24 Day Time Treatment -0.66 >More info -0.55 >More info Day Time Control 1hr white light pulse aerial rosette Original data
25 6h volatiles Sm. R3089 0.66 >More info 0.55 >More info 6h untreated whole seedling Original data GEO bulk
26 pap1-D 0.69 >More info 0.51 >More info Col-0 aerial part Original data
27 Seedling-HeatStressed TOTALmRNA 0.59 >More info 0.60 >More info Seedling-control TOTALmRNA seedling Original data
28 low CO2 + dark 0.68 >More info 0.50 >More info normal CO2 + light Original data GEO bulk
29 WOX1-1 0.68 >More info 0.49 >More info Col-0 aerial part Original data
30 IAA Treated 0.53 >More info 0.64 >More info Negative Control Original data GEO bulk
31 pif4pif5 high R/FR -0.68 >More info -0.48 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
32 Mutant nph4-1_arf19-1 (IAA) -0.64 >More info -0.50 >More info Col (IAA) Original data GEO bulk
33 Dark 44min pls RedLigh 1min -0.50 >More info -0.64 >More info Dark 45 min Original data Light treatments
34 Heat shock optimum 0.49 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
35 2d dark-grown WT(Col-0)/1 hr red light -0.59 >More info -0.54 >More info 2d dark-grown WT seedling Original data GEO bulk
36 Fei-0-1h IAA 0.64 >More info 0.49 >More info Fei-0-0h IAA whole plant Original data GEO bulk
37 Seedling-HeatStressed POLYSOMESmRNA 0.55 >More info 0.58 >More info Seedling-control POLYSOMESmRNA seedling Original data
38 WT Red light 18h -0.61 >More info -0.51 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
39 24h volatiles Sm. R3089 0.59 >More info 0.52 >More info 24h untreated whole seedling Original data GEO bulk
40 Fei-0-30min IAA 0.60 >More info 0.50 >More info Fei-0-0h IAA whole plant Original data GEO bulk
41 G3P -0.61 >More info -0.49 >More info Mock distal leaves Original data GEO bulk
42 Laer pretreat GA Flg22 1h 0.39 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
43 SPT4-R3 seedlings0 DAS -0.75 >More info -0.34 >More info Col-0 seedlings0 DAS seedlings Original data
44 camta1-2 0.52 >More info 0.57 >More info Col-0-WT Original data GEO bulk
45 Shoot dark control 7h 0.60 >More info 0.48 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
46 Light 4h steady-state -0.57 >More info -0.51 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
47 Mutant nph4-1 (IAA) -0.61 >More info -0.47 >More info Col (IAA) Original data GEO bulk
48 seedling 24h after Gamma atm-1 -0.54 >More info -0.53 >More info seedling day 2 unirradiated atm-1 24h Original data
49 ebs Pool 0.60 >More info 0.47 >More info Ler Pool seedling Original data GEO bulk
50 Light 4h polysome-bound -0.57 >More info -0.49 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
51 piffq FR 1h -0.68 >More info -0.37 >More info WT FR 1h whole seedling Original data GEO bulk
52 Light 0.5h steady-state -0.45 >More info -0.60 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
53 Col BTH 0.38 >More info 0.67 >More info Col rosettes Original data GEO bulk
54 MYB12OX/tt4 0.64 >More info 0.40 >More info Col-0 aerial part Original data
55 IRP1-OE-Ctrl--shoot -0.68 >More info -0.36 >More info COL-0-Ctrl--shoot shoot Original data
56 Light 0.5h polysome-bound -0.49 >More info -0.55 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
57 M6PR transgenic leaf 0mM NaCl 0.50 >More info 0.53 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
58 WT Red light 1h -0.47 >More info -0.56 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
59 1 h Light Total RNA -0.45 >More info -0.58 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
60 Shoot dark control 24h 0.57 >More info 0.45 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
61 C24-1h IAA 0.67 >More info 0.35 >More info C24-0h IAA whole plant Original data GEO bulk
62 npr1 sni1 SA 0.65 >More info 0.37 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
63 Red/FR Light 4 h 0.48 >More info 0.54 >More info FarRed Light 4 h Original data Light treatments
64 sfr3 cold 0.67 >More info 0.34 >More info WT-cold aerial tissues Original data GEO bulk
65 FarRed Light 4 h -0.40 >More info -0.61 >More info White Light 4 h Original data Light treatments
66 Col-0-1h IAA 0.60 >More info 0.40 >More info Col-0-0h IAA whole plant Original data GEO bulk
67 WT(Ler) Rc15 -0.51 >More info -0.49 >More info WT(Ler) Dark Original data GEO bulk
68 12h volatiles Sm. R3089 0.66 >More info 0.33 >More info 12h untreated whole seedling Original data GEO bulk
69 abi4-102 -lincomycin 0.59 >More info 0.40 >More info Col-0 -lincomycin Original data GEO bulk
70 Blue Light 4 h -0.36 >More info -0.63 >More info White Light 4 h Original data Light treatments
71 seedling 24h after Gamma WT -0.51 >More info -0.47 >More info seedling day 2 unirradiated WT 24h Original data
72 pif4pif5 mut 24h FR -0.56 >More info -0.42 >More info WT 24h FR Original data GEO bulk
73 Dark 40 min pls UV-A 5 min -0.42 >More info -0.56 >More info Dark 45 min Original data Light treatments
74 det2 light-dark 0.59 >More info 0.38 >More info det2 light light-dark Original data GEO bulk
75 4C 1h 0.50 >More info 0.47 >More info 4C 0h Original data GEO bulk
76 bHLH122 ox -0.43 >More info -0.53 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
77 aerial organ callus inducing medium 12 h 0.56 >More info 0.39 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
78 Col-0-30min IAA 0.58 >More info 0.37 >More info Col-0-0h IAA whole plant Original data GEO bulk
79 FarRed Light 45min 0.44 >More info 0.51 >More info White Light 45min Original data Light treatments
80 Pseudomonas 0.42 >More info 0.52 >More info Control pseudomonas treated whole seedling Original data GEO bulk
81 35S:LOB-GR DEX -0.55 >More info -0.38 >More info Col DEX dexamethasone seedling Original data GEO bulk
82 mbd11 mutant thaliana 10-day-old seedling 0.51 >More info 0.42 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
83 35S::ERF104 H2O 4h -0.64 >More info -0.28 >More info Col-0 H2O 4h Original data GEO bulk
84 BI-1-1h IAA 0.57 >More info 0.35 >More info BI-1-0h IAA whole plant Original data GEO bulk
85 Bay-0-30min IAA 0.51 >More info 0.41 >More info Bay-0-0h IAA whole plant Original data GEO bulk
86 30m light -0.57 >More info -0.35 >More info before light whole seedlings Original data GEO bulk
87 mkk2 control rep 0.50 >More info 0.42 >More info Col-0 Time 0 rep Original data GEO bulk
88 C24-30min IAA 0.59 >More info 0.33 >More info C24-0h IAA whole plant Original data GEO bulk
89 Red Light 45min 0.35 >More info 0.56 >More info White Light 45min Original data Light treatments
90 Blue Light 45 min -0.38 >More info -0.53 >More info White Light 45min Original data Light treatments
91 Mutant iaa5_6_19 -0.57 >More info -0.34 >More info Col Original data GEO bulk
92 entire vegetative rosette 0.63 >More info 0.27 >More info Col-0 Mock WL entire vegetative rosette Original data
93 MYB12OX 0.66 >More info 0.24 >More info Col-0 aerial part Original data
94 tt4 0.56 >More info 0.33 >More info Col-0 aerial part Original data
95 Atss3 Light4 -0.51 >More info -0.38 >More info Atss3 Dark0.5 Original data GEO bulk
96 npr1 sni1 ssn2 SA -0.53 >More info -0.36 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
97 seedling 1.5h after Gamma atm-1 -0.36 >More info -0.53 >More info seedling day 1 unirradiated atm-1 1.5h Original data
98 pap1-D/tt4 0.52 >More info 0.36 >More info Col-0 aerial part Original data
99 sfr6 control -0.53 >More info -0.35 >More info WT control All aerial tissue Original data GEO bulk
100 AtLysM RLK1 mutant water -0.68 >More info -0.19 >More info WT water Original data GEO bulk
101 seedlings protease IV 0.54 >More info 0.33 >More info seedlings nontreated control whole seedling Original data
102 Bur-0-1h IAA 0.53 >More info 0.34 >More info Bur-0h IAA whole plant Original data GEO bulk
103 Leafminer damaged seedlings 0.31 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
104 light -0.69 >More info -0.18 >More info dark light seedling Original data GEO bulk
105 60m light -0.51 >More info -0.35 >More info before light whole seedlings Original data GEO bulk
106 Col-0 37C 0.50 >More info 0.35 >More info Col-0 22C Original data GEO bulk
107 Col-0 WT HL 3h -0.52 >More info -0.32 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
108 mutant acs9B (single mutant) 0.56 >More info 0.28 >More info col control (single mutant) Original data GEO bulk
109 fls1-3 0.57 >More info 0.27 >More info Col-0 Rosette leaves Original data
110 35:SUB1C 0.54 >More info 0.29 >More info WT whole seedling Original data GEO bulk
111 exo70A1 0.64 >More info 0.19 >More info Col-0 whole plant Original data GEO bulk
112 Mutant axr3-1 -0.55 >More info -0.28 >More info Col Original data GEO bulk
113 3x(m) 0.33 >More info 0.50 >More info 2x two week old seedlings Original data
114 mbd6 mutant thaliana 10-day-old seedling 0.52 >More info 0.30 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
115 sfr2 control -0.51 >More info -0.31 >More info WT control All aerial tissue Original data GEO bulk
116 Dark 6h wt 0.56 >More info 0.26 >More info 0h wt Original data
117 Nicotinamide-69hr 0.59 >More info 0.23 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
118 BI-1-30min IAA 0.53 >More info 0.28 >More info BI-1-0h IAA whole plant Original data GEO bulk
119 1 h Light IP RNA -0.30 >More info -0.51 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
120 sfr6 drought -0.24 >More info -0.57 >More info WT drought All aerial tissue Original data GEO bulk
121 Bay-0-3h IAA 0.52 >More info 0.28 >More info Bay-0-0h IAA whole plant Original data GEO bulk
122 A2hsfa1-ox in quadruple mutant -0.61 >More info -0.19 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
123 edr1 96 h powdery mildew 0.68 >More info 0.12 >More info Col-0 96 h powdery mildew Original data GEO bulk
124 erf104-ko H2O 4h -0.54 >More info -0.26 >More info Col-0 H2O 4h Original data GEO bulk
125 t-zeatin 1 h 0.56 >More info 0.23 >More info Mock 1 h Original data Basic hormone treatment of seedlings
126 MIL4 ox 0.51 >More info 0.28 >More info Col Original data GEO bulk
127 35S:RPS4 rrs1-11 24h -0.14 >More info -0.64 >More info 35S:RPS4 24h leaves Original data
128 Dark 6h hml 0.55 >More info 0.22 >More info 0h hml Original data
129 C24-3h IAA 0.62 >More info 0.15 >More info C24-0h IAA whole plant Original data GEO bulk
130 gpa1 -ABA LF 0.24 >More info 0.53 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
131 sfr3 control -0.26 >More info -0.51 >More info WT control All aerial tissue Original data GEO bulk
132 GA 120min 0.08 >More info 0.69 >More info CON120 GA 120 min. root tips Original data GEO bulk
133 Col-O high light -0.60 >More info -0.16 >More info Col-O bule light Original data GEO bulk
134 npr1 sni1 ssn2 -0.51 >More info -0.24 >More info npr1 sni1 water water seedling Original data GEO bulk
135 C58 3hpi 0.50 >More info 0.25 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
136 rosette leaves fdh 0.53 >More info 0.21 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
137 Fei-0-3h IAA 0.56 >More info 0.18 >More info Fei-0-0h IAA whole plant Original data GEO bulk
138 Col0-PsmES4326-24hpi 0.12 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
139 Nicotinamide-85hr 0.51 >More info 0.21 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
140 ein3-1eil1-1 dark 0.58 >More info 0.14 >More info Wt dark whole 4-day old etiolated seedlings Original data GEO bulk
141 bri1-116 -0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
142 intact root auxin 0.51 >More info 0.20 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
143 Cycloheximide 3 h 0.51 >More info 0.20 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
144 proline -0.57 >More info -0.14 >More info noneHS Original data GEO bulk
145 Chemically 0.52 >More info 0.19 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
146 eto1-4 + AVG 0.52 >More info 0.18 >More info eto1-4 whole seedling Original data GEO bulk
147 WT salt 12 h -0.50 >More info -0.20 >More info WT salt 0 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
148 mutant acs2B (single mutant) -0.54 >More info -0.15 >More info col control (single mutant) Original data GEO bulk
149 atmospheric CO2 low Mg shoot 0.55 >More info 0.14 >More info atmospheric CO2 normal Mg shoot Shoot Original data
150 Mutant arf2-6 (IAA) 0.65 >More info 0.03 >More info Col (IAA) Original data GEO bulk
151 rosette leaves lcr 0.54 >More info 0.14 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
152 FLIGHT TAGESB plate 0.50 >More info 0.18 >More info GROUND CONTROL TAGESB plate Original data
153 high-R:FR bud uppermost -0.17 >More info -0.50 >More info low-R:FR bud uppermost high R rosette axillary bud n Original data GEO bulk
154 ahg2-1sid2-2 -0.59 >More info -0.08 >More info WT (Col) control Original data GEO bulk
155 csn3-1 light -0.51 >More info -0.15 >More info WT light Original data GEO bulk
156 sdg2 -0.51 >More info -0.15 >More info wt seedling Original data GEO bulk
157 phyB mutant 22C 10hrs 0.53 >More info 0.13 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
158 etr1 1% sucrose 12-day-old 0.51 >More info 0.14 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
159 php 0.51 >More info 0.14 >More info WT Original data GEO bulk
160 hsfa2 KO -0.54 >More info -0.11 >More info WT (Col-0) whole seedling Original data GEO bulk
161 seedling -0.50 >More info -0.14 >More info Control for tissue data seedling Original data GEO bulk
162 Nicotinamide-65hr 0.53 >More info 0.11 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
163 mp-B4149 mutant IAA -0.50 >More info -0.14 >More info GR-bdl IAA Original data GEO bulk
164 Nicotinamide-73hr 0.50 >More info 0.13 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
165 IAA7mII over-expressor IAA Treated -0.06 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
166 Cor hrpS 24h -0.55 >More info -0.06 >More info Mock 24h Cor hrpS Original data GEO bulk
167 tunicamycin -0.53 >More info -0.08 >More info DMF Original data GEO bulk
168 Col-O low light -0.52 >More info -0.08 >More info Col-O bule light Original data GEO bulk
169 siliques AtHb1 control 0.07 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
170 nas4x leaves + Fe 0.51 >More info 0.08 >More info WT leaves + Fe Leaves Original data GEO bulk
171 Mutant iaa17-6 (IAA) 0.56 >More info 0.02 >More info Col (IAA) Original data GEO bulk
172 ahg2-1 -0.55 >More info -0.02 >More info WT (Col) control Original data GEO bulk
173 short 12-degree- -0.02 >More info -0.54 >More info control short Original data GEO bulk
174 short 17-degree- 0.00 >More info -0.54 >More info control short Original data GEO bulk
175 high R/FR -0.53 >More info 0.01 >More info low R/FR high R/FR (control) mock spray Original data GEO bulk
176 CCA1-ox 6am non-polysomal 0.01 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
177 Apex octa 18DAS -0.51 >More info 0.00 >More info Apex Col 14DAS Original data GEO bulk
178 Mutant iaa17-6 -0.64 >More info 0.14 >More info Col Original data GEO bulk
179 AZC -0.52 >More info 0.03 >More info noneHS Original data GEO bulk
180 brat1 0.51 >More info -0.07 >More info WT Original data
181 Red/FR Light45min -0.14 >More info 0.56 >More info FarRed Light 45min Original data Light treatments
182 CAX1/CAX3 mutant 0.50 >More info -0.15 >More info Col whole plant Original data GEO bulk
183 CHS-silenced type 0.51 >More info -0.19 >More info anthocyanin-producing revertants total tissue Original data GEO bulk
184 Shoot apex inflorescence (after bolting) -0.36 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
185 seed germinating in countinuous light 24h SL -0.40 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
186 ARR22-ox -0.67 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings