root callus inducing medium 24h

4.0:Analysis result - correlation network

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Module-based correlation network(MCN) centered on root callus inducing medium 24h

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List of experiments correlated with "root callus inducing medium 24h"

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Score	Experiment	Correlation from root callus inducing medium 24h	Correlation to root callus inducing medium 24h	Control Experiment	Treatment	Tissue	Link to original data	Experimental Category
1	root callus inducing medium 24h	1.00 >More info	1.00 >More info	root callus inducing medium 0 h	24 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
2	root callus inducing medium 48 h	0.92 >More info	0.90 >More info	root callus inducing medium 0 h	48 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
3	root callus inducing medium 12 h	0.89 >More info	0.92 >More info	root callus inducing medium 0 h	12 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
4	root callus inducing medium 96 h	0.87 >More info	0.83 >More info	root callus inducing medium 0 h	96 hours after incubating on callus inducing medium	root explants	Original data	GEO bulk
5	NAA 6h	0.60 >More info	0.72 >More info	before treatment	NAA	root	Original data	GEO bulk
6	Col-0 6h NAA	0.60 >More info	0.72 >More info	Col-0 6h MOCK			Original data	GEO bulk
7	IAA 8h	0.58 >More info	0.68 >More info	control 8h		root	Original data	GEO bulk
8	IAA 12h	0.57 >More info	0.68 >More info	control 12h		root	Original data	GEO bulk
9	roots IAA	0.56 >More info	0.68 >More info	roots mock			Original data	GEO bulk
10	IAA 2h	0.50 >More info	0.72 >More info	control 2h		root	Original data	GEO bulk
11	IAA 4h	0.56 >More info	0.64 >More info	control 4h		root	Original data	GEO bulk
12	FLIGHT TAGESB plate6 ROOTS	-0.49 >More info	-0.68 >More info	GROUND CONTROL TAGESB plate6 ROOTS		plant tissue	Original data
13	Differentiation 24h	0.51 >More info	0.63 >More info	Differentiation 0h		leaves	Original data
14	auxin and brassinazole seedlings	-0.55 >More info	-0.58 >More info	auxin seedlings			Original data	GEO bulk
15	Fei-0-3h IAA	0.48 >More info	0.65 >More info	Fei-0-0h IAA		whole plant	Original data	GEO bulk
16	GiantCell Root	0.48 >More info	0.65 >More info	Control Root		laser captured giant cells	Original data	GEO bulk
17	Col-0 2HS	-0.39 >More info	-0.73 >More info	Col-0NS	2 h hypoxia stress (2HS)	7-day-old seedlings	Original data
18	rosette Light Wounded	-0.42 >More info	-0.69 >More info	rosette Light Control			Original data	GEO bulk
19	intact root auxin	0.49 >More info	0.62 >More info	intact root control	5 uM indole-3-acetic acid	whole root	Original data	GEO bulk
20	Differentiation 36h	0.49 >More info	0.61 >More info	Differentiation 0h		leaves	Original data
21	abi1 hypocotyl	-0.41 >More info	-0.69 >More info	Ler hypocotyl		hypocotyl	Original data	GEO bulk
22	WT Shoot Hypoxia	-0.45 >More info	-0.64 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
23	MPK6 ox Shoot Hypoxia	-0.43 >More info	-0.66 >More info	WT Shoot Normoxia (mock)	Hypoxia	Shoot	Original data	GEO bulk
24	rosette Dark Wounded	-0.37 >More info	-0.71 >More info	rosette Dark Control			Original data	GEO bulk
25	IAA 1h	0.40 >More info	0.67 >More info	control 1h		root	Original data	GEO bulk
26	IAA 3 h	0.39 >More info	0.67 >More info	Mock 3 h			Original data	Basic hormone treatment of seedlings
27	WT 3H Cold	-0.27 >More info	-0.76 >More info	WT control			Original data	GEO bulk
28	Leaf wounded	-0.38 >More info	-0.65 >More info	Leaf control		vegetative leaf	Original data	GEO bulk
29	Differentiation 48h	0.49 >More info	0.54 >More info	Differentiation 0h		leaves	Original data
30	21h-DC3000 hrpA	0.31 >More info	0.71 >More info	21h-DC3000		leaves	Original data	GEO bulk
31	myb61 xylem	-0.34 >More info	-0.68 >More info	wt xylem		xylem	Original data	GEO bulk
32	Rsch 8h	-0.37 >More info	-0.65 >More info	Rsch CA		Leaves	Original data
33	WT 6H Cold	-0.25 >More info	-0.76 >More info	WT control			Original data	GEO bulk
34	slr-1 6h NAA	-0.36 >More info	-0.65 >More info	Col-0 6h NAA			Original data	GEO bulk
35	35S::MBF1c	-0.32 >More info	-0.69 >More info	control			Original data	GEO bulk
36	roottip hypoxia total	-0.34 >More info	-0.66 >More info	roottip control total			Original data	GEO bulk
37	TA induced	-0.36 >More info	-0.64 >More info	Methanol TA		Suspension cells	Original data	GEO bulk
38	root protoplasts 40 mM NaCl	-0.38 >More info	-0.62 >More info	whole roots 40 mM NaCl		protoplasting and FACS sorting	Original data	GEO bulk
39	Differentiation 12h	0.46 >More info	0.54 >More info	Differentiation 0h		leaves	Original data
40	Sha-3h IAA	0.46 >More info	0.53 >More info	Sha-0h IAA		whole plant	Original data	GEO bulk
41	IAA 24h	0.31 >More info	0.68 >More info	control 24h		root	Original data	GEO bulk
42	Protoplast Induced	-0.28 >More info	-0.70 >More info	Uninduced			Original data	GEO bulk
43	shoot hypoxia total	-0.31 >More info	-0.67 >More info	shoot control total			Original data	GEO bulk
44	2 hr Hypoxia Total RNA	-0.38 >More info	-0.60 >More info	2 hr Non-Stress Total RNA		seedlings	Original data	GEO bulk
45	Col-0 low oxygen	-0.44 >More info	-0.52 >More info	Col-0 control	low oxygen	root	Original data	GEO bulk
46	Col-0 2h NAA	0.39 >More info	0.57 >More info	Col-0 6h MOCK			Original data	GEO bulk
47	Chemically	0.44 >More info	0.52 >More info	Solvent	treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid	whole seedlings	Original data
48	Light	-0.32 >More info	-0.63 >More info	Control			Original data	GEO bulk
49	CMV-A2b mutant	-0.35 >More info	-0.60 >More info	Mock-At		Aerial tissues	Original data	GEO bulk
50	Bay-0-3h IAA	0.44 >More info	0.50 >More info	Bay-0-0h IAA		whole plant	Original data	GEO bulk
51	ISOXABEN	0.39 >More info	0.54 >More info	CON	0.1 mM ISOXABEN		Original data	GEO bulk
52	Sha-1h IAA	0.39 >More info	0.53 >More info	Sha-0h IAA		whole plant	Original data	GEO bulk
53	9 hr Hypoxia IP RNA	-0.35 >More info	-0.57 >More info	9 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
54	Col-0 low oxygen	-0.39 >More info	-0.52 >More info	Col-0			Original data	GEO bulk
55	aba1 hypocotyl	-0.36 >More info	-0.55 >More info	Ler hypocotyl		hypocotyl	Original data	GEO bulk
56	IAA Treated	0.35 >More info	0.55 >More info	Negative Control			Original data	GEO bulk
57	Col 8h	-0.25 >More info	-0.65 >More info	Col CA		Leaves	Original data
58	empty vector IAA Treated	0.31 >More info	0.59 >More info	empty vector mock			Original data	GEO bulk
59	Col-Luc WT 3h antimycin A	-0.38 >More info	-0.51 >More info	Col-Luc WT mock	50 µM antimycin A for 3 hours	whole green tissue	Original data	GEO bulk
60	WT seedlings MV	-0.28 >More info	-0.61 >More info	WT seedlings control		Seedlings	Original data	GEO bulk
61	OsSAP11 expressing	0.35 >More info	0.53 >More info	WT		seedlings	Original data	GEO bulk
62	2hr transitory KNO3 PrR cell	-0.35 >More info	-0.53 >More info	2hr KCl control PrR cell		Protoplasted root cells	Original data	GEO bulk
63	2 hr Hypoxia IP RNA	-0.36 >More info	-0.52 >More info	2 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
64	flu over-tAPX	-0.32 >More info	-0.55 >More info	WT Col			Original data	GEO bulk
65	WT AntimycinA 3h	-0.37 >More info	-0.50 >More info	WT water 3h	3h_AntimycinA		Original data	GEO bulk
66	4C 2h(SOIL)	-0.24 >More info	-0.63 >More info	4C 0h(SOIL)			Original data	GEO bulk
67	WT-Dry	-0.27 >More info	-0.60 >More info	WT-CK	dehydration treatment 1h		Original data
68	Anoxia	-0.31 >More info	-0.55 >More info	Control	anoxia for 6h at 23°C in the dark.		Original data	GEO bulk
69	aerial organ callus inducing medium 96 h	0.50 >More info	0.36 >More info	aerial organ callus inducing medium 0 h	96 hours after incubating on callus inducing medium	aerial organ explants	Original data	GEO bulk
70	root epidermis and lateral root cap -S	0.24 >More info	0.62 >More info	root epidermis and lateral root cap pH5.7			Original data	GEO bulk
71	opr3 JA 0.5 h	-0.17 >More info	-0.69 >More info	opr3 0 h			Original data	GEO bulk
72	axr1 hypocotyl	-0.29 >More info	-0.57 >More info	wt hypocotyl		hypocotyl	Original data	GEO bulk
73	npr1 sni1 SA	-0.31 >More info	-0.54 >More info	npr1 sni1 water	salicylic acid	seedling	Original data	GEO bulk
74	Rose Bengal 0.5 uM	-0.26 >More info	-0.59 >More info	Control RB and PER	Rose Bengal		Original data
75	root - 04% oxygen - 2h	-0.19 >More info	-0.65 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
76	MPK6 ox Root Hypoxia	-0.31 >More info	-0.53 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
77	Seedling-HeatStressed POLYSOMESmRNA	-0.28 >More info	-0.56 >More info	Seedling-control POLYSOMESmRNA		seedling	Original data
78	Col 1d	-0.32 >More info	-0.52 >More info	Col CA		Leaves	Original data
79	low CO2 + light	-0.25 >More info	-0.59 >More info	normal CO2 + light			Original data	GEO bulk
80	triploid female excess	0.15 >More info	0.69 >More info	tetraploid			Original data	GEO bulk
81	Mutant nph4-1 (IAA)	-0.32 >More info	-0.51 >More info	Col (IAA)			Original data	GEO bulk
82	21h-DC3000 avrRpm1	0.30 >More info	0.53 >More info	21h-DC3000		leaves	Original data	GEO bulk
83	WT Root Hypoxia	-0.33 >More info	-0.50 >More info	WT Root Normoxia (mock)	Hypoxia	Root	Original data	GEO bulk
84	9 hr Hypoxia 1 hr recovery IP RNA	-0.32 >More info	-0.51 >More info	9 hr Non-Stress IP RNA		seedlings	Original data	GEO bulk
85	3x(m)	-0.15 >More info	-0.68 >More info	2x		two week old seedlings	Original data
86	flu	-0.31 >More info	-0.51 >More info	WT Col			Original data	GEO bulk
87	root stele -S	0.27 >More info	0.55 >More info	root stele pH5.7			Original data	GEO bulk
88	2hr continuous KCl and MSX control PeR cell	-0.26 >More info	-0.56 >More info	2hr KCl control PeR cell		Pericycle root cells	Original data	GEO bulk
89	Te 8h	-0.28 >More info	-0.54 >More info	Te CA		Leaves	Original data
90	aox1a:rpoTmp MLD stressed	0.30 >More info	0.51 >More info	WT(Col0) MLD stressed (control aox1a:rpoTmp)		leaf	Original data
91	Col-0 (t-zeatin 3 h)	0.21 >More info	0.60 >More info	Col-0			Original data	Cytokinin treatment of seedlings
92	NahG	0.24 >More info	0.57 >More info	Col-0		Leaves	Original data	GEO bulk
93	Methyl Jasmonate 0.5 h	-0.25 >More info	-0.55 >More info	Mock 0.5 h			Original data	Basic hormone treatment of seedlings
94	Stem tissue 2 days NAA	0.18 >More info	0.62 >More info	Stem tissue T0	Stem tissue with NAA treatment	Stem tissue with NAA treatment	Original data	GEO bulk
95	Starch sheath 2 days NAA	0.28 >More info	0.52 >More info	Starch sheath T0	Stem starch sheath under NAA in vitro treatment before cell divission	laser capture microdissection	Original data	GEO bulk
96	1h +Pi	0.28 >More info	0.52 >More info	1h -Pi		root	Original data	GEO bulk
97	WT drought	-0.26 >More info	-0.54 >More info	WT control		All aerial tissue	Original data	GEO bulk
98	WT+chitooctaose	-0.29 >More info	-0.50 >More info	WT+water	chitooctaose	seedlings	Original data	GEO bulk
99	sfr6 drought	0.20 >More info	0.59 >More info	WT drought		All aerial tissue	Original data	GEO bulk
100	GST-overexpression seedlings control	-0.28 >More info	-0.51 >More info	WT seedlings control		Seedlings	Original data
101	myb3 myb3r4d	-0.21 >More info	-0.58 >More info	Wild type Col0-9d		whole seedlings	Original data	GEO bulk
102	Methyl Jasmonate 1 h	-0.24 >More info	-0.54 >More info	Mock 1 h			Original data	Basic hormone treatment of seedlings
103	Shoot apex inflorescence (after bolting)	0.13 >More info	0.65 >More info	Control for tissue data			Original data	Developmental series; organs / tissues at different ages
104	Selenate (root)	-0.26 >More info	-0.52 >More info	Ws (root)			Original data	GEO bulk
105	IXB induced	-0.22 >More info	-0.56 >More info	Methanol IXB		Suspension cells	Original data	GEO bulk
106	whole roots 140 mM NaCl 30 minutes	-0.20 >More info	-0.58 >More info	whole roots standard			Original data	GEO bulk
107	Root Selenate	-0.26 >More info	-0.52 >More info	Root control	40 micromolar selenate	Root	Original data	GEO bulk
108	bHLH122 ox	0.21 >More info	0.57 >More info	WT Col-0	bHLH122 overexpression	shoot	Original data	GEO bulk
109	Heat and anoxia	-0.26 >More info	-0.50 >More info	Control	treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark.		Original data	GEO bulk
110	WT Shoot-Pi	-0.25 >More info	-0.51 >More info	WT Shoot+Pi		shoots	Original data	GEO bulk
111	ein2 mutant roots mock	0.25 >More info	0.51 >More info	roots mock			Original data	GEO bulk
112	Atss3 Dark4	0.25 >More info	0.50 >More info	Atss3 Dark0.5			Original data	GEO bulk
113	WT 24H Cold	-0.23 >More info	-0.52 >More info	WT control			Original data	GEO bulk
114	vtc2 mature somatic embryo	-0.23 >More info	-0.52 >More info	WT mature somatic embryo		mature somatic embryo	Original data	GEO bulk
115	seedling -S Exp	0.20 >More info	0.55 >More info	seedling FN Exp		seedling	Original data
116	wnk8-2 untreated	0.23 >More info	0.51 >More info	Col-0 untreated		seedlings	Original data	GEO bulk
117	oas-a1.1 Cd 24h	-0.20 >More info	-0.54 >More info	Cd 24h root		Shoot	Original data	GEO bulk
118	tetraploid	-0.21 >More info	-0.52 >More info	diploid			Original data	GEO bulk
119	root longitudinal zone-4 low sulfur	-0.21 >More info	-0.51 >More info	root longitudinal zone-4 pH 5.7			Original data	GEO bulk
120	seed germinating in countinuous light 24h SL	0.04 >More info	0.67 >More info	Control for tissue data		seed	Original data	GEO bulk
121	bri1-116	-0.02 >More info	0.73 >More info	Col		seedling	Original data	GEO bulk
122	ABA JA 24h	-0.11 >More info	-0.60 >More info	EtOH 24h	24hr		Original data	GEO bulk
123	root longitudinal zone-1 low sulfur	0.18 >More info	0.53 >More info	root longitudinal zone-1 pH 5.7			Original data	GEO bulk
124	Col ozone 3h	-0.19 >More info	-0.52 >More info	Col clean-air 3h	ozone		Original data	GEO bulk
125	sim smr1	0.19 >More info	0.52 >More info	WT		seedling	Original data	GEO bulk
126	IAA/inhibitor B Treated	-0.16 >More info	-0.54 >More info	IAA Treated			Original data	GEO bulk
127	WT 30μM phosphate 8 hours.	0.09 >More info	0.61 >More info	WT control (not supplemented).			Original data
128	Aerobic prt6	-0.13 >More info	-0.56 >More info	Aerobic Col-0	aerobic (normal) conditions	seedlings	Original data	GEO bulk
129	Shoot -P	-0.16 >More info	-0.53 >More info	Shoot Mock	P_starvation 10-day Phosphate starvation		Original data	GEO bulk
130	35S::PI ap3-3 35S::AP-GR +DEX	-0.13 >More info	-0.56 >More info	0hr DEX			Original data	GEO bulk
131	TNT-seedlings	-0.08 >More info	-0.61 >More info	DMF-control-seedlings	TNT-treated-seedlings	whole plant	Original data	GEO bulk
132	root - 01% oxygen - 30min	-0.12 >More info	-0.55 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
133	FarRed Light 45min	0.04 >More info	0.61 >More info	White Light 45min			Original data	Light treatments
134	Col BTH	-0.02 >More info	0.67 >More info	Col		rosettes	Original data	GEO bulk
135	Inflorescences Trp1	0.11 >More info	0.54 >More info	Inflorescences ler		inflorescences	Original data	GEO bulk
136	root - 04% oxygen - 30min	-0.08 >More info	-0.57 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
137	L2.5 mutant	-0.13 >More info	-0.51 >More info	Wt			Original data	GEO bulk
138	Laer pretreat GA Flg22 1h	-0.07 >More info	0.71 >More info	Laer pretreat water control		leaf discs	Original data	GEO bulk
139	ptpks2	-0.02 >More info	0.63 >More info	Col-WT		leaves	Original data	GEO bulk
140	root - 08% oxygen - 30min	0.01 >More info	-0.61 >More info	root - 21% oxygen - 30min			Original data	GEO bulk
141	gpa1 -ABA GC	0.09 >More info	0.51 >More info	Col-0 -ABA GC		Guard cells taken for mature leaves of five week-old plants	Original data	GEO bulk
142	ex1 flu dark 8hours/30 minute light	-0.06 >More info	-0.51 >More info	col dark 8hours/30 minute light			Original data	GEO bulk
143	-Sulfate 24 h	0.03 >More info	0.53 >More info	Mock 24 h (1500uM sulfate)			Original data	Response to sulfate limitation
144	root - 08% oxygen - 2h	-0.04 >More info	-0.52 >More info	root - 21% oxygen - 2h			Original data	GEO bulk
145	SA 24h	0.11 >More info	-0.65 >More info	EtOH 24h	24hr		Original data	GEO bulk
146	CCA1-ox 6am non-polysomal	0.03 >More info	0.51 >More info	WT 6am non-polysomal		aerial part	Original data
147	ANAC102 over-expressor	0.01 >More info	0.51 >More info	C24			Original data	GEO bulk
148	ABA SA 24h	0.10 >More info	-0.62 >More info	EtOH 24h	24hr		Original data	GEO bulk
149	Heat shock optimum	-0.16 >More info	0.65 >More info	Heat shock baseline	Photosynthesis at optimum temperature	leaf first fully expanded	Original data	GEO bulk
150	IAA7mII over-expressor IAA Treated	-0.20 >More info	0.69 >More info	empty vector IAA Treated			Original data	GEO bulk
151	red illumination +lincomycin	-0.06 >More info	0.52 >More info	red illumination -lincomycin			Original data	GEO bulk
152	siliques AtHb1 control	-0.08 >More info	0.52 >More info	siliques WT control	control	silique	Original data	GEO bulk
153	Col0-PsmES4326-24hpi	-0.18 >More info	0.61 >More info	Col0-mock-24hpi		leaf	Original data	GEO bulk
154	Leafminer damaged seedlings	-0.25 >More info	0.56 >More info	Healthy seedlings		leaves	Original data	GEO bulk