4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on upb1-1 elongation zone
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List of experiments correlated with "upb1-1 elongation zone"  Help Download transcriptome of top 30
Score Experiment Correlation from
upb1-1 elongation zone		 Correlation to
upb1-1 elongation zone		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 upb1-1 elongation zone 1.00 >More info 1.00 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
2 root longitudinal zone-3 low sulfur -0.84 >More info -0.65 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
3 root cells endodermis 140mM NaCl 48 hours -0.77 >More info -0.60 >More info root cells endodermis standard 1 hour root cells endodermis Original data
4 root cells epidermis 140mM NaCl 32 hours -0.70 >More info -0.65 >More info root cells epidermis standard 1 hour root cells epidermis Original data
5 root cells epidermis 140mM NaCl 48 hours -0.72 >More info -0.62 >More info root cells epidermis standard 1 hour root cells epidermis Original data
6 root cells epidermis 140mM NaCl 3 hours -0.71 >More info -0.61 >More info root cells epidermis standard 1 hour root cells epidermis Original data
7 SHR-GR Time 1H Dex 0.67 >More info 0.63 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
8 root cells epidermis 140mM NaCl 8 hours -0.68 >More info -0.59 >More info root cells epidermis standard 1 hour root cells epidermis Original data
9 root cells epidermis 140mM NaCl 20 hours -0.69 >More info -0.57 >More info root cells epidermis standard 1 hour root cells epidermis Original data
10 root cells stele 140mM NaCl 48 hours -0.67 >More info -0.57 >More info root cells stele standard 1 hour root cells stele Original data
11 root cells endodermis 140mM NaCl 32 hours -0.67 >More info -0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
12 root cells cortex 140mM NaCl 32 hours -0.66 >More info -0.57 >More info root cells cortex standard 1 hour root cells cortex Original data
13 line J1551-5 days control + 2 days salt s -0.59 >More info -0.64 >More info line J1551-7 days-control Original data
14 SHR-GR Time 3H Dex 0.57 >More info 0.65 >More info SHR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
15 root cells stele 140mM NaCl 32 hours -0.62 >More info -0.54 >More info root cells stele standard 1 hour root cells stele Original data
16 Col-0 low oxygen -0.66 >More info -0.50 >More info Col-0 control low oxygen root Original data GEO bulk
17 root cells endodermis 140mM NaCl 20 hours -0.60 >More info -0.55 >More info root cells endodermis standard 1 hour root cells endodermis Original data
18 root cells stele 140mM NaCl 8 hours -0.63 >More info -0.49 >More info root cells stele standard 1 hour root cells stele Original data
19 root cells cortex 140mM NaCl 48 hours -0.66 >More info -0.45 >More info root cells cortex standard 1 hour root cells cortex Original data
20 bbx24 in Simulated Shade 0.54 >More info 0.56 >More info WT in simulated shade shade seedling Original data
21 root cells endodermis 140mM NaCl 3 hours -0.58 >More info -0.52 >More info root cells endodermis standard 1 hour root cells endodermis Original data
22 Chemically -0.49 >More info -0.61 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
23 SCR 96hr-S -0.59 >More info -0.50 >More info SCR 0hr endodermis Original data
24 5-Triiodobenzoic acid3 h -0.48 >More info -0.60 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
25 hira-protoplast -0.58 >More info -0.49 >More info WT-protoplast protoplast Original data
26 35:SUB1C 0.56 >More info 0.49 >More info WT whole seedling Original data GEO bulk
27 toc1-1-53hr -0.53 >More info -0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
28 root cells stele 140mM NaCl 20 hours -0.54 >More info -0.50 >More info root cells stele standard 1 hour root cells stele Original data
29 root cortex pH4.6 -0.51 >More info -0.53 >More info root cortex pH5.7 Original data GEO bulk
30 root stele -S -0.39 >More info -0.65 >More info root stele pH5.7 Original data GEO bulk
31 root cells endodermis 140mM NaCl 8 hours -0.54 >More info -0.49 >More info root cells endodermis standard 1 hour root cells endodermis Original data
32 root longitudinal zone-4 NaCl -0.59 >More info -0.44 >More info root longitudinal zone-4 Original data GEO bulk
33 OXUPB1-2 meristematic zone -0.56 >More info -0.47 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
34 root epidermis and lateral root cap pH4.6 -0.64 >More info -0.39 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
35 root longitudinal zone-3 pH 4.6 -0.43 >More info -0.60 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
36 SCR 72hr-S -0.55 >More info -0.47 >More info SCR 0hr endodermis Original data
37 roots bhlh100/101 100uM Fe -0.60 >More info -0.41 >More info roots WT 100uM Fe 100uM Fe roots Original data GEO bulk
38 toc1-1-73hr -0.46 >More info -0.55 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
39 rhd2 -0.57 >More info -0.43 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
40 inhibitor B Treated -0.50 >More info -0.50 >More info Negative Control Original data GEO bulk
41 root cells stele 140mM NaCl 1 hour -0.53 >More info -0.46 >More info root cells stele standard 1 hour root cells stele Original data
42 Anoxia -0.60 >More info -0.39 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
43 root cells stele 140mM NaCl 3 hours -0.54 >More info -0.45 >More info root cells stele standard 1 hour root cells stele Original data
44 epidermis auxin -0.45 >More info -0.54 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
45 Col-0 0h NAA -0.54 >More info -0.44 >More info Col-0 6h MOCK Original data GEO bulk
46 Laer pretreat GA Flg22 1h 0.27 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
47 TNT-seedlings -0.32 >More info -0.66 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
48 tga1 tga4 2h KCl 0.55 >More info 0.42 >More info Col 0 2h KCl 5 mM KCl root Original data GEO bulk
49 Mutant arf2-6 (IAA) -0.55 >More info -0.42 >More info Col (IAA) Original data GEO bulk
50 AgNO3 3 h -0.54 >More info -0.43 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
51 Mutant axr3-1 (IAA) -0.46 >More info -0.51 >More info Col (IAA) Original data GEO bulk
52 root cells cortex 140mM NaCl 20 hours -0.47 >More info -0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
53 red illumination +lincomycin -0.41 >More info -0.55 >More info red illumination -lincomycin Original data GEO bulk
54 Inflorescences Trp1 -0.39 >More info -0.57 >More info Inflorescences ler inflorescences Original data GEO bulk
55 Ws HS -0.55 >More info -0.40 >More info Ws control heat shocked seedling Original data GEO bulk
56 vte1-1 3d vernalization 0.68 >More info 0.26 >More info WT 3d vernalization Original data GEO bulk
57 columella auxin -0.38 >More info -0.56 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
58 Root dark control 7h -0.58 >More info -0.36 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
59 root longitudinal zone-4 pH 4.6 -0.52 >More info -0.42 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
60 T101D 10mM NH4NO3 0.70 >More info 0.24 >More info col 10mM NH4NO3 Root Original data
61 35S::RSL4 0.56 >More info 0.37 >More info Col-0 Control root Original data GEO bulk
62 roottip hypoxia total -0.54 >More info -0.39 >More info roottip control total Original data GEO bulk
63 root longitudinal zone-4 low sulfur -0.52 >More info -0.40 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
64 elf3-7-23ºC 0.51 >More info 0.41 >More info WT-23ºC Original data GEO bulk
65 SA -0.50 >More info -0.40 >More info WT mock Whole seedling Original data GEO bulk
66 T101A 10mM NH4NO3 0.67 >More info 0.23 >More info col 10mM NH4NO3 Root Original data
67 WT in -N 0.59 >More info 0.31 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
68 noa1-2 -0.56 >More info -0.33 >More info Col-0 whole seedlings Original data GEO bulk
69 GA4 3 h (ga1 seed) -0.62 >More info -0.27 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
70 WT Root Hypoxia -0.66 >More info -0.23 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
71 Ibuprofen 3 h -0.34 >More info -0.54 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
72 E2Fa-Dpa -0.53 >More info -0.35 >More info WT Original data GEO bulk
73 2 hr Hypoxia Total RNA -0.63 >More info -0.25 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
74 plant (tga2-5-6) 4h phytoprostane A1 -0.50 >More info -0.38 >More info plant (tga2-5-6) 4h control Original data GEO bulk
75 ERF115OE roottip5days 0.57 >More info 0.31 >More info Col-0 roottip5days root tips Original data
76 Root dark control 24h -0.58 >More info -0.30 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
77 phr1 phl1 Shoot-Pi -0.56 >More info -0.31 >More info WT Shoot-Pi shoots Original data GEO bulk
78 WT 30μM arsenate 8 hours. -0.54 >More info -0.33 >More info WT control (not supplemented). Original data
79 R. solani AG8 -0.52 >More info -0.35 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
80 WT 1mM phosphate 8 hours. -0.66 >More info -0.21 >More info WT control (not supplemented). Original data
81 cpctry -0.26 >More info -0.61 >More info Col Original data GEO bulk
82 whole roots -Fe 24hour -0.54 >More info -0.31 >More info whole roots standard Original data GEO bulk
83 DUO1 induced 12h -0.54 >More info -0.31 >More info 12hr-not-induced whole plant Original data GEO bulk
84 Fe starvation 24 h -0.54 >More info -0.31 >More info Control Original data GEO bulk
85 MG132 3 h -0.32 >More info -0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
86 Col-0 overexpressing At1g54160 control -0.50 >More info -0.35 >More info WT no treatement Original data GEO bulk
87 mp-B4149 mutant IAA -0.62 >More info -0.23 >More info GR-bdl IAA Original data GEO bulk
88 At1g54160 ox -0.50 >More info -0.35 >More info Col-0 Original data GEO bulk
89 mutant acs6E (single mutant) 0.64 >More info 0.21 >More info col control (single mutant) Original data GEO bulk
90 P35S:rGRF1 -0.50 >More info -0.34 >More info Col-0 Original data GEO bulk
91 Red Light 4 h -0.34 >More info -0.50 >More info White Light 4 h Original data Light treatments
92 short 12-degree- 0.17 >More info 0.67 >More info control short Original data GEO bulk
93 MYB46-GR DEX 0.34 >More info 0.50 >More info MYB46-GR mock Young rosette leaves (5-7th) Original data GEO bulk
94 root hypoxia total -0.59 >More info -0.25 >More info root control total Original data GEO bulk
95 IAA7mII over-expressor IAA Treated 0.15 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
96 Col-0 2HS -0.66 >More info -0.17 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
97 seedling 1.5h after HZE WT -0.54 >More info -0.29 >More info seedling day 1 unirradiated WT 1.5h Original data
98 bZIP1ko mutant N+Light- 0.11 >More info 0.72 >More info WT-sib N+Light- whole plant Original data GEO bulk
99 DUO1 induced 24h -0.54 >More info -0.28 >More info 24hr-not-induced whole plant Original data GEO bulk
100 10mM sucrose 0.55 >More info 0.27 >More info control Whole seedling Original data GEO bulk
101 seed germinating in countinuous light 12 h SL -0.53 >More info -0.29 >More info Control for tissue data seed Original data GEO bulk
102 atmyc2 cop1 Seedling Dark -0.52 >More info -0.29 >More info WT Seedling Dark Original data GEO bulk
103 roots WT 0uM Fe -0.64 >More info -0.17 >More info roots WT 100uM Fe 0uM Fe roots Original data GEO bulk
104 ahg2-1abi1-1 -0.60 >More info -0.21 >More info WT (Col) control Original data GEO bulk
105 roots bhlh100/101 0uM Fe -0.62 >More info -0.18 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
106 Root P recovery -0.53 >More info -0.27 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
107 WT-16ºC 0.55 >More info 0.25 >More info WT-23ºC Original data GEO bulk
108 root control pSHR -0.54 >More info -0.26 >More info root control total control root Original data GEO bulk
109 3d old, both 10mM sucrose and 0.2µM SMX 0.51 >More info 0.29 >More info control Whole seedling Original data GEO bulk
110 root control p35S -0.66 >More info -0.13 >More info root control total control root Original data GEO bulk
111 phr1 Shoot-Pi -0.54 >More info -0.24 >More info WT Root-Pi shoots Original data GEO bulk
112 mtf1-1 -0.51 >More info -0.27 >More info Col0 root Original data
113 ahg2-1 -0.57 >More info -0.20 >More info WT (Col) control Original data GEO bulk
114 Root submergence 24h -0.55 >More info -0.22 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
115 Col-0 wt Hypoxic -0.55 >More info -0.22 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
116 gis5 seedlings 0.64 >More info 0.12 >More info WT seedlings Whole seedlings (leaves + roots) Original data
117 9 hr Hypoxia Total RNA -0.51 >More info -0.25 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
118 root control pGL2 -0.50 >More info -0.26 >More info root control total control root Original data GEO bulk
119 Root submergence 7h -0.54 >More info -0.22 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
120 ga1-3 scl3-1 0.53 >More info 0.22 >More info ga1-3 whole root Original data
121 root longitudinal zone-2 -Fe -0.69 >More info -0.06 >More info root longitudinal zone-2 standard Original data GEO bulk
122 Mutant iaa5_6_19 0.53 >More info 0.22 >More info Col Original data GEO bulk
123 root epidermis and lateral root cap -S -0.24 >More info -0.51 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
124 root hypoxia pSHR -0.52 >More info -0.22 >More info root hypoxia total hypoxia root Original data GEO bulk
125 35S:VND7-VP16-GR+CHX 0.19 >More info 0.55 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
126 4d red light grown hmr-22 seedlings -0.52 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
127 root control pRPL11C -0.58 >More info -0.15 >More info root control total control root Original data GEO bulk
128 Col0-PsmES4326-24hpi 0.12 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
129 ABA SA 24h 0.10 >More info 0.63 >More info EtOH 24h 24hr Original data GEO bulk
130 TaFLS overexpression line (OE1) -0.21 >More info -0.51 >More info Col-0 Rosette leaves Original data
131 phr1 phl1 Root-Pi 0.54 >More info 0.17 >More info WT Shoot+Pi roots Original data GEO bulk
132 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		-0.61 >More info -0.10 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
133 mutant acs2B (single mutant) 0.51 >More info 0.20 >More info col control (single mutant) Original data GEO bulk
134 short 17-degree- 0.13 >More info 0.57 >More info control short Original data GEO bulk
135 21h-DC3000 avrRpm1 -0.19 >More info -0.51 >More info 21h-DC3000 leaves Original data GEO bulk
136 NJ15 -0.15 >More info -0.54 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
137 nd-1 mock 48 hpi -0.51 >More info -0.18 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
138 Root -P 0.52 >More info 0.16 >More info Root Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
139 Mutant arf19-1 0.56 >More info 0.12 >More info Col Original data GEO bulk
140 max3GR24 (1 uM) 0.50 >More info 0.18 >More info max3 seedlings DMSO (mock) whole seedlings Original data GEO bulk
141 WT Root-Pi 0.50 >More info 0.18 >More info WT Root+Pi roots Original data GEO bulk
142 glk1 glk2 GLK1-GR +DEX 24h 0.60 >More info 0.08 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
143 whole roots -Fe 3 hour -0.54 >More info -0.13 >More info whole roots standard Original data GEO bulk
144 til1-1 37C -0.51 >More info -0.16 >More info Col-0 37C Original data GEO bulk
145 elevated CO2 high Mg root 0.50 >More info 0.17 >More info atmospheric CO2 high Mg root Root Original data
146 Fe starvation 3 h -0.54 >More info -0.13 >More info Control Original data GEO bulk
147 piffq FR 3h 0.54 >More info 0.12 >More info WT FR 3h whole seedling Original data GEO bulk
148 root cortex 40 mM NaCl 0.52 >More info 0.13 >More info root cortex Original data GEO bulk
149 myb3 myb3r4d 0.15 >More info 0.50 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
150 MPK6 ox Root Hypoxia -0.56 >More info -0.06 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
151 whole roots -Fe 12 hour -0.54 >More info -0.08 >More info whole roots standard Original data GEO bulk
152 piffq FR 1h 0.52 >More info 0.08 >More info WT FR 1h whole seedling Original data GEO bulk
153 Red/FR Light45min 0.13 >More info -0.73 >More info FarRed Light 45min Original data Light treatments
154 35S-MIF1 dark grown 0.54 >More info 0.05 >More info Dark-grown WT control Original data GEO bulk
155 RRE1 Chitin -0.51 >More info -0.08 >More info Chitin Original data GEO bulk
156 chl1-12 10mM NH4NO3 0.50 >More info 0.09 >More info col 10mM NH4NO3 Root Original data
157 1h +Pi 0.54 >More info 0.04 >More info 1h -Pi root Original data GEO bulk
158 Leafminer damaged seedlings 0.00 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
159 IRP1-OE-Fe--root 0.50 >More info 0.04 >More info COL-0-Fe--root root Original data
160 ahg3-1 -0.63 >More info 0.09 >More info ABA control Original data GEO bulk
161 Tsu-1 -Fe 48h -0.55 >More info 0.02 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
162 Tsu -Fe 48h Roots -0.55 >More info 0.02 >More info Tsu +Fe 24h Roots Original data GEO bulk
163 Col BTH -0.15 >More info 0.67 >More info Col rosettes Original data GEO bulk
164 WT chitooctaose -0.50 >More info -0.01 >More info WT water Original data GEO bulk
165 root hypoxia p35S -0.51 >More info 0.01 >More info root hypoxia total hypoxia root Original data GEO bulk
166 KAN1-GR 30min -0.52 >More info 0.02 >More info KAN1-GR 0min Original data GEO bulk
167 pvip1 pvip2 seedling 0.51 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
168 ABA control -0.55 >More info 0.08 >More info No ABA control Original data GEO bulk
169 gpa1 -ABA GC 0.10 >More info -0.56 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
170 bri1-116 -0.32 >More info 0.73 >More info Col seedling Original data GEO bulk
171 brat1nrpe1 0.15 >More info -0.55 >More info WT Original data
172 seed germinating in countinuous light 24h SL -0.32 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
173 Heat shock optimum -0.32 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
174 stele pSHR 0h BL -0.50 >More info 0.17 >More info WR 35S 0h BL brassinosteroid root Original data
175 CCA1-ox 6am non-polysomal -0.21 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
176 siliques AtHb1 control -0.23 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
177 Roots Cd 0.54 >More info -0.34 >More info Roots control Cd Root Original data GEO bulk
178 Shoot apex inflorescence (after bolting) -0.45 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
179 FarRed Light 45min -0.36 >More info 0.52 >More info White Light 45min Original data Light treatments