4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on root - 01% oxygen - 48h
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "root - 01% oxygen - 48h"  Help Download transcriptome of top 30
Score Experiment Correlation from
root - 01% oxygen - 48h		 Correlation to
root - 01% oxygen - 48h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root - 01% oxygen - 48h 1.00 >More info 1.00 >More info root - 21% oxygen - 48h Original data GEO bulk
2 root - 04% oxygen - 48h 0.87 >More info 0.94 >More info root - 21% oxygen - 48h Original data GEO bulk
3 root - 08% oxygen - 48h 0.86 >More info 0.90 >More info root - 21% oxygen - 48h Original data GEO bulk
4 Col-0 wt Hypoxic 0.82 >More info 0.75 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
5 WT Root Hypoxia 0.77 >More info 0.76 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
6 root - 04% oxygen - 2h 0.68 >More info 0.85 >More info root - 21% oxygen - 2h Original data GEO bulk
7 root - 01% oxygen - 2h 0.67 >More info 0.83 >More info root - 21% oxygen - 2h Original data GEO bulk
8 Aerobic e1 ate2 0.71 >More info 0.76 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
9 Col upon hypoxia 6 hrs 0.87 >More info 0.49 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
10 Aerobic prt6 0.67 >More info 0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
11 Tsu -Fe 24h Roots 0.79 >More info 0.55 >More info Tsu +Fe 24h Roots Original data GEO bulk
12 Tsu-1 -Fe 24h 0.79 >More info 0.55 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
13 root hypoxia total 0.72 >More info 0.62 >More info root control total Original data GEO bulk
14 pepr1-1 Pepr2-3 untreated 0.69 >More info 0.63 >More info WT untreated untreated Original data GEO bulk
15 root - 08% oxygen - 2h 0.46 >More info 0.85 >More info root - 21% oxygen - 2h Original data GEO bulk
16 Cs root -0.73 >More info -0.56 >More info control root Original data GEO bulk
17 WT Shoot Hypoxia 0.59 >More info 0.67 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
18 roottip hypoxia total 0.69 >More info 0.56 >More info roottip control total Original data GEO bulk
19 MPK6 ox Root Hypoxia 0.62 >More info 0.63 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
20 root - 04% oxygen - 30min 0.53 >More info 0.70 >More info root - 21% oxygen - 30min Original data GEO bulk
21 root - 08% oxygen - 30min 0.46 >More info 0.75 >More info root - 21% oxygen - 30min Original data GEO bulk
22 Norflurazon 0.70 >More info 0.50 >More info Col-0 Original data GEO bulk
23 Norflurazon 0.70 >More info 0.50 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
24 seedling h S Exp 0.48 >More info 0.72 >More info seedling -S Exp seedling Original data
25 seed germinating in countinuous light 24h SL 0.51 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
26 Col-0 low oxygen 0.71 >More info 0.45 >More info Col-0 control low oxygen root Original data GEO bulk
27 shoot hypoxia total 0.45 >More info 0.71 >More info shoot control total Original data GEO bulk
28 Col-0 2HS 0.65 >More info 0.50 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
29 20m.KCl -0.55 >More info -0.60 >More info To. KCl 14 day old Roots Original data GEO bulk
30 9 hr Hypoxia 1 hr recovery Total RNA 0.71 >More info 0.44 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
31 Tsu-1 -Fe 48h 0.80 >More info 0.34 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
32 Tsu -Fe 48h Roots 0.80 >More info 0.34 >More info Tsu +Fe 24h Roots Original data GEO bulk
33 MPK6 ox Shoot Hypoxia 0.45 >More info 0.69 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
34 ahg2-1 0.62 >More info 0.50 >More info WT (Col) control Original data GEO bulk
35 P.p 6hai 0.71 >More info 0.41 >More info At-Control roots Original data GEO bulk
36 whole roots -Fe 72 hour 0.67 >More info 0.43 >More info whole roots standard Original data GEO bulk
37 Fe starvation 72 h 0.67 >More info 0.43 >More info Control Original data GEO bulk
38 Prohexadione 3 h -0.60 >More info -0.48 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
39 6m.KNO3 -0.59 >More info -0.48 >More info To. KNO3 14 day old Roots Original data GEO bulk
40 0.2µM SMX -0.61 >More info -0.45 >More info control Whole seedling Original data GEO bulk
41 2 hr Hypoxia Total RNA 0.61 >More info 0.45 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
42 Hypoxic prt6 0.71 >More info 0.35 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
43 9 hr Hypoxia 1 hr recovery IP RNA 0.64 >More info 0.41 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
44 root - 01% oxygen - 30min 0.45 >More info 0.60 >More info root - 21% oxygen - 30min Original data GEO bulk
45 hira-root -0.64 >More info -0.40 >More info WT-root root Original data
46 9 hr Hypoxia Total RNA 0.64 >More info 0.40 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
47 Hypoxic e1 ate 0.70 >More info 0.34 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
48 P.p 2.5hai 0.63 >More info 0.40 >More info At-Control roots Original data GEO bulk
49 Heat Recovery 24 h (root) -0.55 >More info -0.48 >More info Stress mock 24 h (root) Original data Stress treatments
50 35S:PCO1 hypoxia -0.41 >More info -0.62 >More info WT hypoxia whole rosette Original data
51 Mutant iaa5_6_19 0.48 >More info 0.54 >More info Col Original data GEO bulk
52 whole roots -Fe 48 hour 0.64 >More info 0.37 >More info whole roots standard Original data GEO bulk
53 Wounding Stress3 h (root) -0.73 >More info -0.27 >More info Stress mock 3 h (root) Original data Stress treatments
54 bak1-3 untreated 0.62 >More info 0.38 >More info WT untreated untreated Original data GEO bulk
55 aux1 mutant roots air -0.60 >More info -0.40 >More info roots IAA Original data GEO bulk
56 R. solani AG8 0.61 >More info 0.39 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
57 mbd4 mutant thaliana 10-day-old seedling 0.66 >More info 0.33 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
58 Stem tissue 5 days NAA 0.54 >More info 0.43 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
59 gun1gun5 far-red pretreated -0.61 >More info -0.36 >More info WT far-red pretreated Original data GEO bulk
60 Drought Stress 24 h (root) -0.55 >More info -0.41 >More info Stress mock 24 h (root) Original data Stress treatments
61 hypoxic 0.61 >More info 0.35 >More info WT aerobic hypoxia Original data GEO bulk
62 Var2-1 roots 2hr KCl control -0.58 >More info -0.38 >More info Col0 roots 2hr KCl control root Original data GEO bulk
63 triplod male excess 0.45 >More info 0.51 >More info tetraploid Original data GEO bulk
64 Ws HS 0.53 >More info 0.42 >More info Ws control heat shocked seedling Original data GEO bulk
65 bri1-116 0.22 >More info 0.73 >More info Col seedling Original data GEO bulk
66 Seedling KUA1-IOX est 0.63 >More info 0.31 >More info Seedling KUA1-IOX mock Original data
67 atsf1-2 mutant seedling 0.64 >More info 0.30 >More info Col-0 seedling seedlings Original data
68 scl3 0.62 >More info 0.32 >More info Col-0 whole root Original data GEO bulk
69 Cambium 5 days NAA 0.53 >More info 0.40 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
70 ahg2-1sid2-2 0.37 >More info 0.56 >More info WT (Col) control Original data GEO bulk
71 root Dosed gold 0.56 >More info 0.35 >More info root No gold .125 mM gold 24 h roots Original data
72 0.125 mM gold 24 h 0.56 >More info 0.35 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
73 Blue Light 45 min -0.35 >More info -0.56 >More info White Light 45min Original data Light treatments
74 siliques AtHb1 control 0.39 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
75 Col BTH 0.24 >More info 0.67 >More info Col rosettes Original data GEO bulk
76 ckh2 CK0 0.61 >More info 0.30 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
77 axr2 0.52 >More info 0.38 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
78 msg2-BR 0.53 >More info 0.37 >More info BR BR dark-grown seedlings Original data GEO bulk
79 Full C2 T2 -0.37 >More info -0.53 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
80 root cortex pH4.6 0.37 >More info 0.52 >More info root cortex pH5.7 Original data GEO bulk
81 seedling 1.5h after Gamma WT 0.54 >More info 0.34 >More info seedling day 1 unirradiated WT 1.5h Original data
82 Col-0 HS 0.51 >More info 0.37 >More info Col-0 control heat shocked seedling Original data GEO bulk
83 WT (Col-0) heat shock 0.51 >More info 0.37 >More info WT (Col-0) whole seedling Original data GEO bulk
84 WT seedlings MV 0.55 >More info 0.32 >More info WT seedlings control Seedlings Original data GEO bulk
85 35S::PI ap3-3 35S::AP-GR +DEX 0.25 >More info 0.62 >More info 0hr DEX Original data GEO bulk
86 Callus 0.58 >More info 0.29 >More info Control for tissue data callus Original data GEO bulk
87 IAA/inhibitor A Treated 0.60 >More info 0.26 >More info IAA Treated Original data GEO bulk
88 Heat shock optimum 0.21 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
89 Propiconazole 3 h 0.57 >More info 0.29 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
90 9 hr Hypoxia IP RNA 0.56 >More info 0.29 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
91 shoots bhlh100/101 0uM Fe 0.55 >More info 0.30 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
92 root cells epidermis 140mM NaCl 20 hours 0.52 >More info 0.32 >More info root cells epidermis standard 1 hour root cells epidermis Original data
93 R. sylvestris submerged 0.55 >More info 0.29 >More info R. sylvestris air Original data GEO bulk
94 Selenate (root) 0.63 >More info 0.21 >More info Ws (root) Original data GEO bulk
95 Root Selenate 0.63 >More info 0.21 >More info Root control 40 micromolar selenate Root Original data GEO bulk
96 TNT-seedlings 0.58 >More info 0.26 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
97 Cocultivation 8 hrs root 0.58 >More info 0.26 >More info Mock cocultivation 8 hrs root Root Original data
98 FarRed Light 45min -0.27 >More info -0.57 >More info White Light 45min Original data Light treatments
99 Col0-PsmES4326-24hpi 0.23 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
100 P.p 10.5hai 0.53 >More info 0.30 >More info At-Control roots Original data GEO bulk
101 9m.KCl 0.52 >More info 0.31 >More info To. KCl 14 day old Roots Original data GEO bulk
102 cngc19 0.52 >More info 0.31 >More info Col-0 root Original data GEO bulk
103 ubc13A-es -0.65 >More info -0.18 >More info Col-es root Original data GEO bulk
104 ice1 control 0.57 >More info 0.26 >More info WT control Original data GEO bulk
105 etr1 1% sucrose 12-day-old 0.52 >More info 0.30 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
106 inhibitor A Treated 0.52 >More info 0.30 >More info Negative Control Original data GEO bulk
107 R. amphibia submerged 0.62 >More info 0.20 >More info R. amphibia air Original data GEO bulk
108 gai Control 0.60 >More info 0.22 >More info Laer Control leaf discs Original data GEO bulk
109 root cells endodermis 140mM NaCl 3 hours 0.54 >More info 0.27 >More info root cells endodermis standard 1 hour root cells endodermis Original data
110 35S::HRE2 Aerobic -0.55 >More info -0.26 >More info Col-0 wt Aerobic untreated control Original data GEO bulk
111 Red/FR Light45min 0.13 >More info 0.68 >More info FarRed Light 45min Original data Light treatments
112 Shoot apex inflorescence (after bolting) 0.15 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
113 seedlings + TSA 0.66 >More info 0.13 >More info control seedlings 10-day old whole seedling Original data GEO bulk
114 MG132 3 h 0.23 >More info 0.56 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
115 Mutant axr3-1 0.61 >More info 0.17 >More info Col Original data GEO bulk
116 Col-7 Sucrose 0.55 >More info 0.23 >More info col-7 Original data GEO bulk
117 P.p 30hai 0.54 >More info 0.24 >More info At-Control roots Original data GEO bulk
118 Col-0 root drought 0.61 >More info 0.16 >More info Col-0 root water root Original data GEO bulk
119 hni9 high nitrogen 0.52 >More info 0.25 >More info WT high nitrogen roots Original data GEO bulk
120 CeO2 germinant -0.58 >More info -0.19 >More info Millipore Water germinant CeO2 seedling Original data
121 piffq 3d WL 0.51 >More info 0.26 >More info WT 3d WL whole seedling Original data GEO bulk
122 root cells stele 140mM NaCl 32 hours 0.55 >More info 0.21 >More info root cells stele standard 1 hour root cells stele Original data
123 WT mitomycin C 0.53 >More info 0.23 >More info WT mock shoot apical meristem Original data
124 det2 light-dark -0.59 >More info -0.17 >More info det2 light light-dark Original data GEO bulk
125 COL-0-Fe--root 0.59 >More info 0.17 >More info COL-0-Ctrl--root root Original data
126 ahg2-1abi1-1 0.60 >More info 0.16 >More info WT (Col) control Original data GEO bulk
127 QK HS 0.58 >More info 0.18 >More info QK control heat shocked seedling Original data GEO bulk
128 FHY3p dark+DEX -0.60 >More info -0.15 >More info FHY3p dark+mock Original data GEO bulk
129 root cells stele 140mM NaCl 20 hours 0.52 >More info 0.22 >More info root cells stele standard 1 hour root cells stele Original data
130 SA 0.54 >More info 0.20 >More info WT mock Whole seedling Original data GEO bulk
131 elevated CO2 high Mg root -0.54 >More info -0.20 >More info atmospheric CO2 high Mg root Root Original data
132 root cells endodermis 140mM NaCl 32 hours 0.56 >More info 0.17 >More info root cells endodermis standard 1 hour root cells endodermis Original data
133 msg2 0.56 >More info 0.16 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
134 root cells endodermis 140mM NaCl 8 hours 0.50 >More info 0.22 >More info root cells endodermis standard 1 hour root cells endodermis Original data
135 pnp1-1 1wk +P 0.52 >More info 0.20 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
136 clf-28 swn-7 0.51 >More info 0.21 >More info Col whole plant Original data GEO bulk
137 Var2-1 roots 2hr KNO3 nitrogen -0.51 >More info -0.21 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
138 seedling -S Exp -0.15 >More info -0.57 >More info seedling FN Exp seedling Original data
139 ACN1-2 Sucrose -0.56 >More info -0.15 >More info Col-7 Sucrose Original data GEO bulk
140 root cells stele 140mM NaCl 8 hours 0.50 >More info 0.21 >More info root cells stele standard 1 hour root cells stele Original data
141 csn5 (csn5a-2 csn5b) dark 0.50 >More info 0.21 >More info WT dark Original data GEO bulk
142 cngc1-3 0.60 >More info 0.11 >More info Col-0 root Original data GEO bulk
143 root cells stele 140mM NaCl 3 hours 0.50 >More info 0.21 >More info root cells stele standard 1 hour root cells stele Original data
144 Leafminer damaged seedlings 0.14 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
145 1.5 hr nitrate 0.52 >More info 0.17 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
146 ABA 1 h -0.19 >More info -0.50 >More info Mock 1 h Original data Basic hormone treatment of seedlings
147 UV Stress 24 h (root) -0.67 >More info -0.01 >More info Stress mock 24 h (root) Original data Stress treatments
148 12m.KNO3 -0.52 >More info -0.16 >More info To. KNO3 14 day old Roots Original data GEO bulk
149 RRE2 Chitin 0.50 >More info 0.18 >More info Chitin Original data GEO bulk
150 ein3 eil1 0.61 >More info 0.07 >More info Col-0 mock Whole seedling Original data GEO bulk
151 cys-c1 root 0.56 >More info 0.11 >More info Root-WT roots Original data GEO bulk
152 hog1-7 0.50 >More info 0.17 >More info wt whole seedling Original data GEO bulk
153 1.5 hr ammonium 0.53 >More info 0.14 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
154 root cells endodermis 140mM NaCl 48 hours 0.53 >More info 0.14 >More info root cells endodermis standard 1 hour root cells endodermis Original data
155 mutant-line774 0.50 >More info 0.17 >More info WT-control whole plant Original data GEO bulk
156 24h +Pi -0.53 >More info -0.13 >More info 24h -Pi root Original data GEO bulk
157 msh1 recA3 untreated 0.11 >More info 0.55 >More info WT untreated above-ground parts Original data GEO bulk
158 opr3 OPDA 0.5 h 0.11 >More info 0.55 >More info opr3 0 h Original data GEO bulk
159 camta1 root drought 0.52 >More info 0.13 >More info Col-0 root drought root Original data GEO bulk
160 Genotoxic Stress 3 h (root) -0.62 >More info -0.03 >More info Stress mock 3 h (root) Original data Stress treatments
161 piffq 2d WL 0.50 >More info 0.15 >More info WT 2d WL whole seedling Original data GEO bulk
162 cngc1 -0.56 >More info -0.08 >More info Ws-2 Seedlings Original data GEO bulk
163 SCL3 OE -0.52 >More info -0.11 >More info Col-0 whole root Original data GEO bulk
164 ein3 eil1 JA 0.54 >More info 0.09 >More info JA Whole seedling Original data GEO bulk
165 elevated CO2 low Mg root -0.53 >More info -0.09 >More info atmospheric CO2 low Mg root Root Original data
166 dsr1 -0.57 >More info -0.05 >More info WT mock Whole seedling Original data GEO bulk
167 Laer pretreat GA Flg22 1h -0.10 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
168 piffq FR 24h 0.53 >More info 0.07 >More info WT FR 24h whole seedling Original data GEO bulk
169 Full AC2 T2 0.55 >More info 0.05 >More info AC2 and AC2del control T2 two days post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
170 cdpk6-yfp 0.04 >More info 0.56 >More info Kan seedlings Original data GEO bulk
171 phr1 Root-Pi -0.53 >More info -0.06 >More info WT Root+Pi roots Original data GEO bulk
172 ckh1 CK25 0.57 >More info 0.02 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
173 Col-0 DCA 6d -0.09 >More info -0.50 >More info Col-0 MOCK 6d Original data GEO bulk
174 8 hr ammonium 0.50 >More info 0.08 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
175 iron minus 24h -0.56 >More info -0.01 >More info iron +24h root Original data GEO bulk
176 Te 3d 0.51 >More info 0.05 >More info Te CA Leaves Original data
177 mtf1-1 0.56 >More info -0.01 >More info Col0 root Original data
178 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
179 pvip1 pvip2 seedling 0.54 >More info -0.02 >More info Col-0 seedling seedling Original data GEO bulk
180 -Sulfate 24 h 0.10 >More info -0.62 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
181 SCR-GR Time 12H Dex 0.54 >More info -0.03 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
182 ckh1 CK0 0.54 >More info -0.05 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
183 Mutant cry1 -0.53 >More info 0.11 >More info Col-0 Original data GEO bulk
184 cry1 low light -0.53 >More info 0.11 >More info Col-O low light Original data GEO bulk
185 IAA7mII over-expressor IAA Treated -0.29 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
186 ara1/2mut -0.18 >More info 0.51 >More info Col-3 Original data GEO bulk