4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Root -Cs
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List of experiments correlated with "Root -Cs"  Help Download transcriptome of top 30
Score Experiment Correlation from
Root -Cs		 Correlation to
Root -Cs		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Root -Cs 1.00 >More info 1.00 >More info Control-root Original data GEO bulk
2 root Dosed gold 0.76 >More info 0.62 >More info root No gold .125 mM gold 24 h roots Original data
3 0.125 mM gold 24 h 0.76 >More info 0.62 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
4 24h +Pi -0.71 >More info -0.66 >More info 24h -Pi root Original data GEO bulk
5 SA 0.74 >More info 0.59 >More info WT mock Whole seedling Original data GEO bulk
6 seedlings-week-old RECA1-overexpressing
transgenic		 0.67 >More info 0.60 >More info seedlings-week-old Col-0 seedlings Original data
7 gpa1-4/agb1-2 ozone 2d -0.52 >More info -0.71 >More info Col ozone 2d ozone Original data GEO bulk
8 TNT-seedlings 0.48 >More info 0.75 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
9 root stele pH4.6 0.56 >More info 0.65 >More info root stele pH5.7 Original data GEO bulk
10 root epidermis and lateral root cap pH4.6 0.59 >More info 0.61 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
11 AgNO3 3 h 0.54 >More info 0.64 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
12 35S::PI ap3-3 35S::AP-GR +DEX 0.41 >More info 0.77 >More info 0hr DEX Original data GEO bulk
13 SCL3 OE -0.64 >More info -0.52 >More info Col-0 whole root Original data GEO bulk
14 bbx24 in Simulated Shade -0.51 >More info -0.64 >More info WT in simulated shade shade seedling Original data
15 root - 04% oxygen - 2h -0.60 >More info -0.55 >More info root - 21% oxygen - 2h Original data GEO bulk
16 6h +Pi -0.60 >More info -0.54 >More info 6h -Pi root Original data GEO bulk
17 8hr-pH4.5 0.57 >More info 0.57 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
18 5-Triiodobenzoic acid3 h 0.52 >More info 0.61 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
19 R. solani AG8 0.60 >More info 0.52 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
20 cdpk6-yfp 0.50 >More info 0.61 >More info Kan seedlings Original data GEO bulk
21 root cells endodermis 140mM NaCl 3 hours 0.52 >More info 0.58 >More info root cells endodermis standard 1 hour root cells endodermis Original data
22 (Ws-2)+100 uM As 0.53 >More info 0.56 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
23 ceh1 mutant 0.60 >More info 0.48 >More info Parent line Original data
24 oligomycin 1 h 0.65 >More info 0.42 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
25 cpr5npr1svi1 0.60 >More info 0.47 >More info WT(COL) Original data GEO bulk
26 oas-a1.1 Cd 18h 0.42 >More info 0.64 >More info Cd 18h root Root Original data GEO bulk
27 cop1 Seedling BL 0.52 >More info 0.52 >More info WT Seedling BL Original data GEO bulk
28 Whole root - low pH 24H 0.48 >More info 0.56 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
29 root cells endodermis 140mM NaCl 8 hours 0.48 >More info 0.56 >More info root cells endodermis standard 1 hour root cells endodermis Original data
30 vte2-1 3d vernalization 0.54 >More info 0.48 >More info WT 3d vernalization Original data GEO bulk
31 ahg2-1sid2-2 0.40 >More info 0.62 >More info WT (Col) control Original data GEO bulk
32 Col0-PsmES4326-24hpi 0.41 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
33 bZIP1ko mutant N+Light- 0.47 >More info 0.55 >More info WT-sib N+Light- whole plant Original data GEO bulk
34 root cortex pH4.6 0.41 >More info 0.61 >More info root cortex pH5.7 Original data GEO bulk
35 coi1-2 0.52 >More info 0.49 >More info Col-0 mock Whole seedling Original data GEO bulk
36 Oxidative Stress 3 h (root) -0.63 >More info -0.38 >More info Stress mock 3 h (root) Original data Stress treatments
37 cpr5 0.55 >More info 0.46 >More info WT(COL) Original data GEO bulk
38 root cells endodermis 140mM NaCl 48 hours 0.50 >More info 0.51 >More info root cells endodermis standard 1 hour root cells endodermis Original data
39 seedling 3h after Gamma WT 0.51 >More info 0.49 >More info seedling day 1 unirradiated WT 3h Original data
40 S14-150 0.43 >More info 0.57 >More info wt Original data GEO bulk
41 phr1 Root-Pi 0.51 >More info 0.48 >More info WT Root+Pi roots Original data GEO bulk
42 cdkf:1-2 0.58 >More info 0.41 >More info wt seedling young seedlings Original data GEO bulk
43 CMP 4hr 0.51 >More info 0.48 >More info Acetone 4hr root Original data GEO bulk
44 bio4-1 mutant watered00µM biotin leaves -0.52 >More info -0.47 >More info bio4-1 mutant leaves leaves Original data GEO bulk
45 Whole root - low pH 6H 0.55 >More info 0.43 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
46 pnp1-1 1wk -P 0.57 >More info 0.41 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
47 rosette leaves fdh 0.57 >More info 0.41 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
48 csn4-1 mutant 0.55 >More info 0.43 >More info WT dark Original data GEO bulk
49 (Col-0)+100 uM As 0.53 >More info 0.45 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
50 cpr5 0.59 >More info 0.39 >More info WT seedling Original data GEO bulk
51 wavy 0.48 >More info 0.50 >More info WT Original data GEO bulk
52 CMV-WT 0.58 >More info 0.39 >More info Mock-At Aerial tissues Original data GEO bulk
53 Col-0 low oxygen 0.45 >More info 0.52 >More info Col-0 control low oxygen root Original data GEO bulk
54 Shoot -Cs 0.44 >More info 0.53 >More info Control-shoot Original data GEO bulk
55 Col BTH 0.30 >More info 0.67 >More info Col rosettes Original data GEO bulk
56 root cells endodermis 140mM NaCl 20 hours 0.41 >More info 0.56 >More info root cells endodermis standard 1 hour root cells endodermis Original data
57 Nicotinamide-81hr 0.62 >More info 0.34 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
58 WT in -N 0.58 >More info 0.38 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
59 plant (tga2-5-6) 4h phytoprostane A1 0.64 >More info 0.32 >More info plant (tga2-5-6) 4h control Original data GEO bulk
60 nia1nia2 0.60 >More info 0.36 >More info Col-0 whole seedlings Original data GEO bulk
61 root endodermis and quiescent center pH4.6 0.36 >More info 0.60 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
62 cpr5scv1 0.55 >More info 0.40 >More info WT(COL) Original data GEO bulk
63 bak1-3 +Pep2 10h 0.56 >More info 0.39 >More info WT +Pep2 10h Pep2 Original data GEO bulk
64 Phytoprostane A1 4 h 0.57 >More info 0.38 >More info Col-0 Original data GEO bulk
65 phr1 Shoot-Pi 0.51 >More info 0.44 >More info WT Root-Pi shoots Original data GEO bulk
66 AtLysM RLK1 mutant water 0.58 >More info 0.37 >More info WT water Original data GEO bulk
67 csn5 (csn5a-2 csn5b) light 0.54 >More info 0.41 >More info WT light Original data GEO bulk
68 Cocultivation 8 hrs root 0.51 >More info 0.44 >More info Mock cocultivation 8 hrs root Root Original data
69 Dark 4 h pls UV-AB 5min 0.45 >More info 0.50 >More info Dark 4 h Original data Light treatments
70 aba3-1 0.42 >More info 0.53 >More info wt Original data GEO bulk
71 whole roots 140 mM NaCl 1 hour 0.67 >More info 0.27 >More info whole roots standard Original data GEO bulk
72 lateral root cap-columella pBRN2 8h BL -0.56 >More info -0.38 >More info lateral root cap-columella pBRN2 0h BL brassinosteroid root Original data
73 Col-0 overexpressing At1g54160 control 0.54 >More info 0.40 >More info WT no treatement Original data GEO bulk
74 At1g54160 ox 0.54 >More info 0.40 >More info Col-0 Original data GEO bulk
75 cpr5npr1 0.50 >More info 0.44 >More info WT(COL) Original data GEO bulk
76 Mutant axr3-1 0.53 >More info 0.41 >More info Col Original data GEO bulk
77 apum23 0.51 >More info 0.43 >More info WT (Col-3) aerial parts Original data GEO bulk
78 RPL18 TuMV inoculated total RNA 0.62 >More info 0.32 >More info mock inoculated total RNA PO Original data GEO bulk
79 rsa3-1 Na 24h 0.29 >More info 0.65 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
80 pericycle auxin 0.43 >More info 0.51 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
81 CeO2 germinant -0.32 >More info -0.62 >More info Millipore Water germinant CeO2 seedling Original data
82 chl1-9 10mM NH4NO3 -0.54 >More info -0.39 >More info col 10mM NH4NO3 Root Original data
83 UV 0.55 >More info 0.38 >More info WT aerial region Original data GEO bulk
84 D2O 0.58 >More info 0.35 >More info H2O seedling Original data GEO bulk
85 Whole root - low pH 12H 0.51 >More info 0.42 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
86 S15-118 0.51 >More info 0.42 >More info wt Original data GEO bulk
87 Nicotinamide-57hr 0.62 >More info 0.31 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
88 Whole root - low pH 3H 0.54 >More info 0.38 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
89 ubc13A -Fe -0.68 >More info -0.24 >More info Col -Fe root Original data GEO bulk
90 IAA/inhibitor B Treated 0.40 >More info 0.52 >More info IAA Treated Original data GEO bulk
91 Leafminer damaged seedlings 0.36 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
92 treated group 0.51 >More info 0.41 >More info Control group Original data
93 root BA 12h 0.50 >More info 0.42 >More info root control 12h boron (5mM) root Original data GEO bulk
94 root cells cortex 140mM NaCl 8 hours 0.42 >More info 0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
95 Nicotinamide-49hr 0.55 >More info 0.36 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
96 short 17-degree- 0.37 >More info 0.54 >More info control short Original data GEO bulk
97 root longitudinal zone-3 pH 4.6 0.38 >More info 0.53 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
98 Chemically 0.39 >More info 0.52 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
99 mkk1/mkk2 24h BTH rep 0.50 >More info 0.41 >More info Col-0 24h BTH rep Original data GEO bulk
100 Stem tissue 2 days NAA 0.34 >More info 0.56 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
101 sta1 0.50 >More info 0.40 >More info WT Original data GEO bulk
102 dicamba 0.51 >More info 0.39 >More info WT mock whole seedling Original data GEO bulk
103 whole roots -Fe 6 hour 0.34 >More info 0.55 >More info whole roots standard Original data GEO bulk
104 Col in Pi deficiency medium 0.51 >More info 0.38 >More info Col in control medium root Original data GEO bulk
105 Col-0 under 4 days salt 0.52 >More info 0.37 >More info Col-0 under control 4 days salt treatment rosette Original data
106 root columella root cap pH4.6 0.52 >More info 0.37 >More info root columella root cap pH5.7 Original data GEO bulk
107 abi4-102 (II) 0.50 >More info 0.39 >More info Col (II) rosette Original data GEO bulk
108 seed germinating in countinuous light 24h SL 0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
109 Nicotinamide-73hr 0.57 >More info 0.32 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
110 Nicotinamide-85hr 0.52 >More info 0.36 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
111 root cells epidermis 140mM NaCl 48 hours 0.37 >More info 0.51 >More info root cells epidermis standard 1 hour root cells epidermis Original data
112 T101D 10mM NH4NO3 -0.32 >More info -0.55 >More info col 10mM NH4NO3 Root Original data
113 whole roots 140 mM NaCl 4 hour 0.51 >More info 0.36 >More info whole roots standard Original data GEO bulk
114 1h +Pi -0.50 >More info -0.37 >More info 1h -Pi root Original data GEO bulk
115 epidermis auxin 0.37 >More info 0.50 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
116 root endodermis and quiescent center 40 mM NaCl 0.53 >More info 0.33 >More info root endodermis and quiescent center Original data GEO bulk
117 Starch sheath 5 days MS incubation 0.31 >More info 0.55 >More info Starch sheath T0 MS incubation laser capture microdissection Original data GEO bulk
118 Col-0 V. longisporum-inoculated 48 hpi 0.36 >More info 0.50 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
119 msh1 albino 0.53 >More info 0.32 >More info WT aerial part Original data GEO bulk
120 Sulfometuron EC50 0.53 >More info 0.32 >More info Carrier Original data GEO bulk
121 seedling 1.5h after Gamma atm-1 0.50 >More info 0.35 >More info seedling day 1 unirradiated atm-1 1.5h Original data
122 Salt Stress 24 h (root) 0.57 >More info 0.28 >More info Stress mock 24 h (root) Original data Stress treatments
123 Heat shock optimum 0.19 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
124 whole roots 140 mM NaCl 30 minutes 0.63 >More info 0.21 >More info whole roots standard Original data GEO bulk
125 Nicotinamide-53hr 0.57 >More info 0.27 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
126 2hr continuous KNO3 ECR cell -0.19 >More info -0.64 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
127 del1-1 mutant 5d uninfected 0.33 >More info 0.50 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
128 cat2-2; 8h switch to ambient CO2 concentrations; 0.55 >More info 0.27 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
129 root cells epidermis 140mM NaCl 3 hours 0.32 >More info 0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
130 intact root auxin 0.52 >More info 0.29 >More info intact root control 5 uM indole-3-acetic acid whole root Original data GEO bulk
131 Selenate (root) 0.52 >More info 0.29 >More info Ws (root) Original data GEO bulk
132 Root Selenate 0.52 >More info 0.29 >More info Root control 40 micromolar selenate Root Original data GEO bulk
133 root cells epidermis 140mM NaCl 32 hours 0.29 >More info 0.52 >More info root cells epidermis standard 1 hour root cells epidermis Original data
134 2hr transitory KNO3 ECR cell -0.24 >More info -0.57 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
135 Nicotinamide-61hr 0.51 >More info 0.29 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
136 anac017-1 H2O2 3h -0.52 >More info -0.28 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
137 sdg2 0.50 >More info 0.30 >More info wt seedling Original data GEO bulk
138 QC pSCR 8h BL -0.52 >More info -0.28 >More info QC pSCR 0h BL brassinosteroid root Original data
139 Ws seedlings 0.50 >More info 0.30 >More info ged1 seedlings Original data GEO bulk
140 ged1 seedlings -0.50 >More info -0.30 >More info Ws seedlings Original data GEO bulk
141 root longitudinal zone-3 -Fe -0.12 >More info -0.68 >More info root longitudinal zone-3 standard Original data GEO bulk
142 Laer pretreat GA Flg22 1h 0.09 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
143 Col-0 INA 48h 0.50 >More info 0.29 >More info Col-0 MOCK 48h Original data GEO bulk
144 nia1nia2noa1-2 0.54 >More info 0.25 >More info Col-0 whole seedlings Original data GEO bulk
145 P35S:rGRF3 0.29 >More info 0.50 >More info WS Original data GEO bulk
146 IAA7mII over-expressor IAA Treated 0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
147 whole roots -Fe 72 hour 0.54 >More info 0.24 >More info whole roots standard Original data GEO bulk
148 35S:RPS4 eds1-2 24h -0.51 >More info -0.27 >More info 35S:RPS4 24h leaves Original data
149 Fe starvation 72 h 0.54 >More info 0.24 >More info Control Original data GEO bulk
150 ARR21C-ox 0.54 >More info 0.24 >More info Col-0 Original data ARR21C overexpression
151 ahg2-1 0.26 >More info 0.52 >More info WT (Col) control Original data GEO bulk
152 seedling 6h after HZE WT 0.52 >More info 0.24 >More info seedling day 1 unirradiated WT 6h Original data
153 Shoot apex inflorescence (after bolting) 0.11 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
154 irradiated leaf (cmt 1d) 0.26 >More info 0.50 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
155 SA Treated 0.67 >More info 0.08 >More info Water Original data GEO bulk
156 Nicotinamide-65hr 0.55 >More info 0.20 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
157 glk1 glk2 GLK1-GR +DEX 24h -0.54 >More info -0.21 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
158 msh1 recA3 untreated 0.22 >More info 0.53 >More info WT untreated above-ground parts Original data GEO bulk
159 Nicotinamide-89hr 0.55 >More info 0.19 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
160 whole roots -Fe 48 hour 0.52 >More info 0.22 >More info whole roots standard Original data GEO bulk
161 seedlings +5AC 0.50 >More info 0.23 >More info control seedlings 10-day old whole seedling Original data GEO bulk
162 8h-DC3000 avrRpm1 0.50 >More info 0.23 >More info 8h-DC3000 leaves Original data GEO bulk
163 seedling 6h after HZE atm-1 0.51 >More info 0.20 >More info seedling day 1 unirradiated atm-1 6h Original data
164 upb1-1 meristematic zone -0.14 >More info -0.57 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
165 SCR-GR Time 12H Dex 0.54 >More info 0.16 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
166 amiRAP aerobic -0.15 >More info -0.55 >More info WT aerobic aerobic Original data GEO bulk
167 Nicotinamide-69hr 0.50 >More info 0.20 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
168 cat2-hCO2 -0.19 >More info -0.50 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
169 bri1-116 -0.06 >More info 0.73 >More info Col seedling Original data GEO bulk
170 msh1 recA3 heat shock 0.16 >More info 0.50 >More info WT heat shock above-ground parts Original data GEO bulk
171 COL-0-Fe--root 0.52 >More info 0.13 >More info COL-0-Ctrl--root root Original data
172 Split KNO3 roots - 8hours -0.02 >More info -0.63 >More info Split KCl roots - 8hours 5mM KNO3 on ONE side for 8 hours roots Original data GEO bulk
173 npr1-1 SA -0.53 >More info -0.11 >More info Col-0 SA complete seedling Original data
174 gpa1 +ABA GC -0.14 >More info -0.50 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
175 root - 08% oxygen - 30min -0.06 >More info -0.56 >More info root - 21% oxygen - 30min Original data GEO bulk
176 QC pSCR(QC pSCRBRI1) 8h BL -0.53 >More info -0.09 >More info QC pSCR(QC pSCRBRI1) 0h BL brassinosteroid root Original data
177 tcp14 0.03 >More info -0.64 >More info WT inflorescences Original data GEO bulk
178 35S::HRE1 Hypoxic -0.10 >More info -0.50 >More info Col-0 wt Hypoxic hypoxic treatment Original data GEO bulk
179 ddm1 F6 inflorescence 0.50 >More info 0.04 >More info wt Col inflorescence unopened flower buds Original data
180 Ws 2h KNO3 -0.00 >More info -0.51 >More info Ws 2h KCl 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
181 ms35 silique stage 7 -0.01 >More info 0.50 >More info Ler 6.7 anther and filament Original data GEO bulk
182 siliques AtHb1 control -0.04 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
183 Mutant sav3-2 (WL) -0.07 >More info 0.50 >More info Col-0 (WL) Original data GEO bulk
184 sav3-2 light -0.07 >More info 0.50 >More info Col-0 light seedlings Original data GEO bulk
185 CCA1-ox 6am non-polysomal -0.09 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
186 root longitudinal zone-4 -Fe 0.12 >More info -0.53 >More info root longitudinal zone-4 standard Original data GEO bulk
187 Col PSTDC3000 24h 0.51 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
188 SOS1 100mM NaCl -0.20 >More info 0.57 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
189 IAA 1h -0.54 >More info 0.19 >More info control 1h root Original data GEO bulk
190 M6PR transgenic 100mM NaCl -0.30 >More info 0.58 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk