4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Light
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List of experiments correlated with "Light"  Help Download transcriptome of top 30
Score Experiment Correlation from
Light		 Correlation to
Light		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Light 1.00 >More info 1.00 >More info Control Original data GEO bulk
2 Col-0 wt Hypoxic 0.63 >More info 0.70 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
3 myb61 xylem 0.66 >More info 0.65 >More info wt xylem xylem Original data GEO bulk
4 Selenate (root) 0.72 >More info 0.59 >More info Ws (root) Original data GEO bulk
5 Root Selenate 0.72 >More info 0.59 >More info Root control 40 micromolar selenate Root Original data GEO bulk
6 TNT-seedlings 0.70 >More info 0.61 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
7 WT Root Hypoxia 0.56 >More info 0.74 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
8 rosette Dark Wounded 0.71 >More info 0.59 >More info rosette Dark Control Original data GEO bulk
9 Seedling KUA1-IOX est 0.69 >More info 0.61 >More info Seedling KUA1-IOX mock Original data
10 roottip hypoxia total 0.59 >More info 0.71 >More info roottip control total Original data GEO bulk
11 root hypoxia total 0.66 >More info 0.62 >More info root control total Original data GEO bulk
12 WT chitooctaose 0.65 >More info 0.63 >More info WT water Original data GEO bulk
13 WT seedlings MV 0.72 >More info 0.54 >More info WT seedlings control Seedlings Original data GEO bulk
14 35S:RPS4 eds1-2 2h -0.60 >More info -0.66 >More info 35S:RPS4 2h leaves Original data
15 Leaf wounded 0.52 >More info 0.74 >More info Leaf control vegetative leaf Original data GEO bulk
16 WT Shoot Hypoxia 0.48 >More info 0.78 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
17 rosette Light Wounded 0.57 >More info 0.68 >More info rosette Light Control Original data GEO bulk
18 abi1 hypocotyl 0.57 >More info 0.67 >More info Ler hypocotyl hypocotyl Original data GEO bulk
19 Col-0 2HS 0.50 >More info 0.73 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
20 AtLysM RLK1 mutant chitooctaose -0.60 >More info -0.63 >More info WT chitooctaose Original data GEO bulk
21 npr1 sni1 brca2a SA -0.66 >More info -0.56 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
22 ex2 flu dark 8hours/30 minute light 0.60 >More info 0.62 >More info col dark 8hours/30 minute light Original data GEO bulk
23 9 hr Hypoxia 1 hr recovery IP RNA 0.78 >More info 0.44 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
24 max4 hypocotyl 0.64 >More info 0.57 >More info wt hypocotyl hypocotyl Original data GEO bulk
25 WT 3h -P 0.50 >More info 0.71 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
26 MPK6 ox Shoot Hypoxia 0.56 >More info 0.65 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
27 Kas -Fe 24h Roots -0.50 >More info -0.68 >More info Kas +Fe 24h Roots Original data GEO bulk
28 Kas-1 -Fe 24h -0.50 >More info -0.68 >More info Kas-1 +Fe 24h roots Original data GEO bulk
29 TA induced 0.55 >More info 0.63 >More info Methanol TA Suspension cells Original data GEO bulk
30 WT+chitooctaose 0.49 >More info 0.69 >More info WT+water chitooctaose seedlings Original data GEO bulk
31 CeO2 germinant -0.66 >More info -0.51 >More info Millipore Water germinant CeO2 seedling Original data
32 Hydrogen Peroxide 500 uM 0.61 >More info 0.56 >More info Control RB and PER Hydrogen Peroxide Original data
33 aba1 hypocotyl 0.53 >More info 0.62 >More info Ler hypocotyl hypocotyl Original data GEO bulk
34 IAA/inhibitor A Treated 0.68 >More info 0.46 >More info IAA Treated Original data GEO bulk
35 npr1 sni1 SA 0.65 >More info 0.49 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
36 flu over-tAPX 0.62 >More info 0.52 >More info WT Col Original data GEO bulk
37 Rsch 8h 0.52 >More info 0.61 >More info Rsch CA Leaves Original data
38 MPK6 ox Root Hypoxia 0.60 >More info 0.53 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
39 P.p 2.5hai 0.64 >More info 0.48 >More info At-Control roots Original data GEO bulk
40 vtc2 mature somatic embryo 0.67 >More info 0.45 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
41 FLIGHT TAGESB plate6 ROOTS 0.52 >More info 0.60 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
42 msh1 albino 0.68 >More info 0.43 >More info WT aerial part Original data GEO bulk
43 Protoplast Induced 0.46 >More info 0.65 >More info Uninduced Original data GEO bulk
44 oas-a1.1 Cd 18h 0.62 >More info 0.49 >More info Cd 18h root Root Original data GEO bulk
45 Leaf systemic 0.52 >More info 0.59 >More info Leaf control vegetative leaf Original data GEO bulk
46 9 hr Hypoxia 1 hr recovery Total RNA 0.73 >More info 0.38 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
47 9m.KCl 0.61 >More info 0.50 >More info To. KCl 14 day old Roots Original data GEO bulk
48 WT flg22 2h 0.62 >More info 0.49 >More info WT 0h Leaf tissue Original data GEO bulk
49 seedlings protease IV 0.52 >More info 0.58 >More info seedlings nontreated control whole seedling Original data
50 P.p 6hai 0.70 >More info 0.39 >More info At-Control roots Original data GEO bulk
51 PNO8 3 h 0.52 >More info 0.57 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
52 seedling 12h after HZE WT 0.61 >More info 0.47 >More info seedling day 1 unirradiated WT 12h Original data
53 mpk6-ko Flg22 4h 0.56 >More info 0.52 >More info mpk6-ko H2O 4h Original data GEO bulk
54 IRP1-OE-Ctrl--root 0.58 >More info 0.50 >More info COL-0-Ctrl--root root Original data
55 P.p 10.5hai 0.68 >More info 0.39 >More info At-Control roots Original data GEO bulk
56 Col-Luc WT 3h antimycin A 0.56 >More info 0.51 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
57 Heat shock optimum 0.42 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
58 oas-a1.1 Cd 24h 0.59 >More info 0.48 >More info Cd 24h root Shoot Original data GEO bulk
59 WT-Dry 0.36 >More info 0.71 >More info WT-CK dehydration treatment 1h Original data
60 bHLH122 ox -0.48 >More info -0.58 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
61 mbd11 mutant thaliana 10-day-old seedling 0.68 >More info 0.37 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
62 9 hr Hypoxia IP RNA 0.62 >More info 0.43 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
63 C58 3hpi 0.54 >More info 0.51 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
64 flu dark 8hours/30 minute light 0.37 >More info 0.68 >More info col dark 8hours/30 minute light Original data GEO bulk
65 Leafminer damaged seedlings 0.49 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
66 Rose Bengal 0.5 uM 0.38 >More info 0.67 >More info Control RB and PER Rose Bengal Original data
67 GST NPP1 4 h (leaf) 0.54 >More info 0.50 >More info Mock 4 h (leaf) Original data Elicitor treatments
68 inhibitor A Treated 0.58 >More info 0.46 >More info Negative Control Original data GEO bulk
69 gun1gun5 far-red pretreated -0.63 >More info -0.41 >More info WT far-red pretreated Original data GEO bulk
70 Wounding Stress3 h (shoot) 0.53 >More info 0.51 >More info Stress mock 3 h (shoot) Original data Stress treatments
71 atr mock 0.68 >More info 0.36 >More info WT mock shoot apical meristem Original data
72 root - 08% oxygen - 2h 0.32 >More info 0.72 >More info root - 21% oxygen - 2h Original data GEO bulk
73 1h +Pi -0.41 >More info -0.63 >More info 1h -Pi root Original data GEO bulk
74 GA 0.42 >More info 0.62 >More info none GA Rosette Original data GEO bulk
75 Col upon hypoxia 6 hrs 0.68 >More info 0.35 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
76 FHY3p dark+DEX -0.62 >More info -0.41 >More info FHY3p dark+mock Original data GEO bulk
77 Cycloheximide 3 h 0.43 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
78 root - 04% oxygen - 2h 0.23 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
79 chito-octamer 0.39 >More info 0.64 >More info Col Mock Original data GEO bulk
80 irradiated leaf (cmt 5d) 0.62 >More info 0.40 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
81 flu 0.55 >More info 0.47 >More info WT Col Original data GEO bulk
82 Infected pft1 leaf 0.54 >More info 0.48 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
83 WT flg22 1h 0.54 >More info 0.48 >More info WT 0h Leaf tissue Original data GEO bulk
84 col-5 DC3000-avrRpm 4h 0.53 >More info 0.49 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
85 P.p 30hai 0.61 >More info 0.41 >More info At-Control roots Original data GEO bulk
86 shoots bhlh100/101 100uM Fe 0.60 >More info 0.42 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
87 Phaseolicola 2 h (leaf) 0.47 >More info 0.55 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
88 35S:PCO1 hypoxia -0.44 >More info -0.58 >More info WT hypoxia whole rosette Original data
89 Col 8h 0.48 >More info 0.54 >More info Col CA Leaves Original data
90 inhibitor B Treated 0.61 >More info 0.40 >More info Negative Control Original data GEO bulk
91 shoot hypoxia total 0.38 >More info 0.63 >More info shoot control total Original data GEO bulk
92 Col0-PsmES4326-24hpi 0.40 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
93 15m.KCl 0.49 >More info 0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
94 opr3 OPDA 0.5 h 0.41 >More info 0.60 >More info opr3 0 h Original data GEO bulk
95 gai Control 0.71 >More info 0.29 >More info Laer Control leaf discs Original data GEO bulk
96 Flagellin 4 h (leaf) 0.54 >More info 0.46 >More info Mock 4 h (leaf) Original data Elicitor treatments
97 myb61 cork 0.43 >More info 0.57 >More info wt cork cork Original data GEO bulk
98 Col-0 low oxygen 0.66 >More info 0.33 >More info Col-0 Original data GEO bulk
99 +1.6 mM Tween 20 1 h. 0.57 >More info 0.42 >More info +distilled water 1 h. Original data GEO bulk
100 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.52 >More info -0.46 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
101 myb50 xylem 0.80 >More info 0.18 >More info wt xylem xylem Original data GEO bulk
102 IAA/inhibitor B Treated 0.54 >More info 0.44 >More info IAA Treated Original data GEO bulk
103 GST 4 h (leaf) 0.45 >More info 0.53 >More info Mock 4 h (leaf) Original data Elicitor treatments
104 ex1 flu dark 8hours/30 minute light 0.46 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
105 root - 01% oxygen - 2h 0.23 >More info 0.75 >More info root - 21% oxygen - 2h Original data GEO bulk
106 miR393 flg22 1h 0.47 >More info 0.51 >More info WT 0h Leaf tissue Original data GEO bulk
107 Te 8h 0.41 >More info 0.57 >More info Te CA Leaves Original data
108 npr1-1 SA -0.68 >More info -0.29 >More info Col-0 SA complete seedling Original data
109 ataf1-1 mutant Col-0 Bgh inoculated 0.54 >More info 0.43 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
110 root - 01% oxygen - 30min 0.38 >More info 0.59 >More info root - 21% oxygen - 30min Original data GEO bulk
111 col-5 hrpA 12h 0.47 >More info 0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
112 seedlings-week-old RECA1-overexpressing
transgenic		 0.40 >More info 0.56 >More info seedlings-week-old Col-0 seedlings Original data
113 Col-0 low oxygen 0.60 >More info 0.36 >More info Col-0 control low oxygen root Original data GEO bulk
114 WT NAA/flg 1h 0.52 >More info 0.44 >More info WT 0h Leaf tissue Original data GEO bulk
115 anac017-2 AntimycinA 3h -0.50 >More info -0.46 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
116 9 hr Hypoxia Total RNA 0.62 >More info 0.34 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
117 erf104-ko Flg22 4h 0.61 >More info 0.35 >More info erf104-ko H2O 4h Original data GEO bulk
118 GiantCell Root -0.52 >More info -0.44 >More info Control Root laser captured giant cells Original data GEO bulk
119 Col in Pi deficiency medium 0.41 >More info 0.55 >More info Col in control medium root Original data GEO bulk
120 Col leaf 100mM NaCl 0.59 >More info 0.36 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
121 Col leaf 100mM NaCl 0.59 >More info 0.36 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
122 Col 100mM NaCl 0.59 >More info 0.36 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
123 Col-0 DCA 48h 0.53 >More info 0.42 >More info Col-0 MOCK 48h Original data GEO bulk
124 root callus inducing medium 24h -0.63 >More info -0.32 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
125 tbf1-mock infiltration -0.59 >More info -0.36 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
126 Col-0-30min IAA 0.54 >More info 0.40 >More info Col-0-0h IAA whole plant Original data GEO bulk
127 R. solani AG8 0.66 >More info 0.28 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
128 shoots bhlh100/101 0uM Fe 0.65 >More info 0.29 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
129 ein2-1 9 hpi A. brassicicola 0.51 >More info 0.43 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
130 Stem tissue 5 days NAA 0.57 >More info 0.37 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
131 35S::RSL4 -0.60 >More info -0.34 >More info Col-0 Control root Original data GEO bulk
132 P35S:rGRF3 0.70 >More info 0.24 >More info WS Original data GEO bulk
133 seedling 6h after HZE WT 0.53 >More info 0.40 >More info seedling day 1 unirradiated WT 6h Original data
134 ckh1 CK200 0.54 >More info 0.39 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
135 HopZ1a treated 0.56 >More info 0.37 >More info col Original data GEO bulk
136 ga1-3/brm-1 0.73 >More info 0.20 >More info wt shoots Original data GEO bulk
137 Col-0 ozone 0.59 >More info 0.34 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
138 2hr transitory KNO3 PrR cell 0.51 >More info 0.42 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
139 chito-tetramer 0.35 >More info 0.58 >More info Col Mock Original data GEO bulk
140 siliques AtHb1 control 0.40 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
141 ref6-1 0.58 >More info 0.34 >More info Col whole seedling Original data GEO bulk
142 coi1-16 ein2 sid2 ctrl -0.62 >More info -0.30 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
143 root protoplasts 40 mM NaCl 0.56 >More info 0.35 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
144 ORS1 induced 0.57 >More info 0.34 >More info mock-induced rosette leaves Original data GEO bulk
145 WT 3H Cold 0.18 >More info 0.73 >More info WT control Original data GEO bulk
146 WT no Pi 0.50 >More info 0.40 >More info WT complete seedlings Original data
147 WT Col-0 Bgh inoculated 0.52 >More info 0.38 >More info WT Col-0 Un-inoculated Original data GEO bulk
148 Bur-0-30min IAA 0.55 >More info 0.35 >More info Bur-0h IAA whole plant Original data GEO bulk
149 Chitin 0.40 >More info 0.50 >More info Col C Original data GEO bulk
150 Aerobic e1 ate2 0.25 >More info 0.65 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
151 4C 2h(SOIL) 0.28 >More info 0.62 >More info 4C 0h(SOIL) Original data GEO bulk
152 Col ozone 3h 0.33 >More info 0.57 >More info Col clean-air 3h ozone Original data GEO bulk
153 anac017-1 H2O2 3h -0.55 >More info -0.34 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
154 C24 ozone 0.56 >More info 0.33 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
155 Laer pretreat GA+JA Flg22 0h 0.65 >More info 0.24 >More info Laer pretreat water control leaf discs Original data GEO bulk
156 Atwrky63 -0.62 >More info -0.27 >More info Col0 none leaf Original data GEO bulk
157 sid2-2 9 hpi A. brassicicola 0.51 >More info 0.38 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
158 root - 04% oxygen - 30min 0.20 >More info 0.69 >More info root - 21% oxygen - 30min Original data GEO bulk
159 Full C2 T2 -0.68 >More info -0.20 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
160 safener treated 0.55 >More info 0.33 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
161 etr1 1% sucrose 12-day-old 0.50 >More info 0.38 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
162 ARR22-ox (t-zeatin 3 h) 0.61 >More info 0.27 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
163 tbf1-elf18 -0.57 >More info -0.31 >More info WT-elf18 10 µM elf18 for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
164 gai MeJA 1h -0.56 >More info -0.31 >More info Laer MeJA 1h leaf discs Original data GEO bulk
165 IAA 0.5 h 0.53 >More info 0.34 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
166 GiantCell Root -0.51 >More info -0.36 >More info Control Root laser captured giant cells Original data GEO bulk
167 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.59 >More info 0.28 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
168 protoplasts T1 [flg22] 0.64 >More info 0.23 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
169 Te ozone 0.59 >More info 0.28 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
170 bZIP1ko mutant N+Light- 0.51 >More info 0.36 >More info WT-sib N+Light- whole plant Original data GEO bulk
171 NAA 3h 0.57 >More info 0.30 >More info before treatment NAA root Original data GEO bulk
172 CT101 ozone 0.58 >More info 0.29 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
173 LTN008-2 aza-dc 0.58 >More info 0.29 >More info LTN012-2 Mock Original data
174 Col-0 V. longisporum-inoculated 48 hpi 0.54 >More info 0.32 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
175 miR393 0h -0.53 >More info -0.33 >More info WT 0h Leaf tissue Original data GEO bulk
176 Cor hrpS 10h 0.56 >More info 0.30 >More info Mock 10h Cor hrpS Original data GEO bulk
177 gpa1 +ABA GC -0.19 >More info -0.67 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
178 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.60 >More info 0.26 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
179 Tsu -Fe 24h Roots 0.50 >More info 0.36 >More info Tsu +Fe 24h Roots Original data GEO bulk
180 Tsu-1 -Fe 24h 0.50 >More info 0.36 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
181 swn-7 -0.65 >More info -0.21 >More info Col whole plant Original data GEO bulk
182 DFPM 0.57 >More info 0.29 >More info control Original data GEO bulk
183 root Dosed gold 0.56 >More info 0.29 >More info root No gold .125 mM gold 24 h roots Original data
184 coi1-16 ein2 sid2 ozone 0.54 >More info 0.31 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
185 0.125 mM gold 24 h 0.56 >More info 0.29 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
186 IXB induced 0.32 >More info 0.53 >More info Methanol IXB Suspension cells Original data GEO bulk
187 coi1-2 0.33 >More info 0.52 >More info Col-0 mock Whole seedling Original data GEO bulk
188 root callus inducing medium 12 h -0.57 >More info -0.28 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
189 Col-0 mbs1-1 HL 3h -0.61 >More info -0.24 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
190 1.5 hr ammonium 0.60 >More info 0.25 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
191 pnp1-1 1wk +P 0.60 >More info 0.25 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
192 dark +H2O2 -0.50 >More info -0.34 >More info dark 5 mM H2O2 seedling Original data GEO bulk
193 Col whole leaf 7dpi 0.51 >More info 0.33 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
194 FLIGHT TAGESB plate 0.53 >More info 0.31 >More info GROUND CONTROL TAGESB plate Original data
195 long 17-degree- 0.32 >More info 0.52 >More info control long Original data GEO bulk
196 WT+H2O2 0.34 >More info 0.50 >More info WT H2O2 Original data GEO bulk
197 Laer pretreat GA Flg22 1h 0.13 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
198 bri1-116 0.11 >More info 0.73 >More info Col seedling Original data GEO bulk
199 rao2 H2O2 3h -0.52 >More info -0.31 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
200 WT powdery mildew 0.55 >More info 0.28 >More info WT control inoculation with the powdery mildew pathogen Original data GEO bulk
201 AvrRpt2 Col-0 6hpi 0.58 >More info 0.25 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
202 ckh1 CK25 0.61 >More info 0.22 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
203 Shoot P recovery 0.65 >More info 0.17 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
204 HopZ1a treated ulp1c ulp1d 0.53 >More info 0.29 >More info col Original data GEO bulk
205 camta1 root water -0.52 >More info -0.29 >More info Col-0 root water root Original data GEO bulk
206 root callus inducing medium 48 h -0.52 >More info -0.29 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
207 OsSAP11 expressing -0.31 >More info -0.50 >More info WT seedlings Original data GEO bulk
208 SQ8 roots 2hr KNO3 nitrogen 0.53 >More info 0.27 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
209 rsl4 -0.65 >More info -0.15 >More info Col-0 Control root Original data GEO bulk
210 A. halleri highZn-root -0.58 >More info -0.22 >More info A. petraea highZn-root Original data GEO bulk
211 vte2 leaves 48h LT 0.54 >More info 0.25 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
212 Col0 roots 2hr KNO3 nitrogen -0.26 >More info -0.53 >More info Col0 roots 2hr KCl control root Original data GEO bulk
213 ALC Toc1 light-light Mock -0.50 >More info -0.28 >More info Col light-light Mock no ethanol Original data GEO bulk
214 SCL3 OE -0.61 >More info -0.17 >More info Col-0 whole root Original data GEO bulk
215 35S-MIF1 dark grown 0.64 >More info 0.14 >More info Dark-grown WT control Original data GEO bulk
216 dorn1-1 Root 100 mM ATP 30 min -0.28 >More info -0.50 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
217 root cells cortex -Fe 0.51 >More info 0.26 >More info whole roots standard Original data GEO bulk
218 COL-0-Fe--root 0.54 >More info 0.23 >More info COL-0-Ctrl--root root Original data
219 ani1 T16 -0.61 >More info -0.16 >More info WT T16 root tissue Original data GEO bulk
220 dcl1-7 0.59 >More info 0.18 >More info Ler Original data GEO bulk
221 root cells epidermis and lateral root cap -Fe 0.53 >More info 0.24 >More info whole roots standard Original data GEO bulk
222 nia1nia2noa1-2 0.57 >More info 0.20 >More info Col-0 whole seedlings Original data GEO bulk
223 Brassinolide 0.5 h (det2) 0.24 >More info 0.53 >More info Mock 0.5 h (det2) Original data Basic hormone treatment of seedlings
224 root - 08% oxygen - 30min 0.04 >More info 0.73 >More info root - 21% oxygen - 30min Original data GEO bulk
225 sid2-avrB-6h 0.23 >More info 0.54 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
226 IAA7mII over-expressor IAA Treated 0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
227 root cells -Fe 0.52 >More info 0.24 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
228 atr zebularine 0.52 >More info 0.24 >More info WT zebularine shoot apical meristem Original data
229 4C 1h 0.09 >More info 0.67 >More info 4C 0h Original data GEO bulk
230 CLO 4mM 0.54 >More info 0.21 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
231 sta1 0.56 >More info 0.19 >More info WT Original data GEO bulk
232 WT (Col-0) inflorescence well-watered day 5 -0.54 >More info -0.21 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
233 Col-0 35S:MBS1 HL 3h -0.55 >More info -0.20 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
234 Col leaf scrape 5 dpi 0.59 >More info 0.16 >More info Col whole leaf 5d UI leaf section scrapes Original data GEO bulk
235 ckh1 CK0 0.50 >More info 0.24 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
236 GST-overexpression seedlings control 0.52 >More info 0.22 >More info WT seedlings control Seedlings Original data
237 IRP1-OE-Ctrl--shoot 0.60 >More info 0.14 >More info COL-0-Ctrl--shoot shoot Original data
238 elevated CO2 high Mg root -0.64 >More info -0.09 >More info atmospheric CO2 high Mg root Root Original data
239 WT mitomycin C 0.57 >More info 0.16 >More info WT mock shoot apical meristem Original data
240 F1 whole seedlings root 0.58 >More info 0.15 >More info Col whole seedlings root Seedlings Original data GEO bulk
241 QC pSCR(QC pSCRBRI1) 8h BL -0.54 >More info -0.19 >More info QC pSCR(QC pSCRBRI1) 0h BL brassinosteroid root Original data
242 csn5 (csn5a-2 csn5b) light 0.51 >More info 0.21 >More info WT light Original data GEO bulk
243 root cells cortex 140mM NaCl 48 hours 0.55 >More info 0.16 >More info root cells cortex standard 1 hour root cells cortex Original data
244 gir flower 33d 0.56 >More info 0.15 >More info Col-7 flower 33d flower Original data GEO bulk
245 Col BTH 0.04 >More info 0.67 >More info Col rosettes Original data GEO bulk
246 Mutant cry1 (High Light) -0.57 >More info -0.14 >More info Col-0 (High Light) Original data GEO bulk
247 penta MeJA 1h 0.64 >More info 0.07 >More info Laer MeJA 1h leaf discs Original data GEO bulk
248 cry1 high light -0.57 >More info -0.14 >More info Col-O high light Original data GEO bulk
249 spx1 spx2 no Pi 0.53 >More info 0.17 >More info WT no Pi seedlings Original data
250 ADD3 0.64 >More info 0.05 >More info WT aerial part Original data GEO bulk
251 lug3 leaves 0.54 >More info 0.15 >More info WT-leaves matured rosette leaves Original data GEO bulk
252 root cells columella root cap -Fe 0.53 >More info 0.16 >More info whole roots standard Original data GEO bulk
253 root cells cortex 140mM NaCl 3 hours 0.50 >More info 0.19 >More info root cells cortex standard 1 hour root cells cortex Original data
254 WT (Col-0) inflorescence moderate drought day 4 -0.54 >More info -0.14 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
255 WT (Col-0) inflorescence moderate drought day 5 -0.57 >More info -0.11 >More info WT (Col-0) inflorescence well-watered day 0
[C02]		 Unopen flower buds Original data
256 arr-dmso-sample 0.51 >More info 0.16 >More info Wt-dmso-sample seedling Original data
257 Col(gl) leaf 100mM NaCl -0.56 >More info -0.11 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
258 Col(gl) 100mM NaCl -0.56 >More info -0.11 >More info Col 100mM NaCl 100mM NaCl leaf Original data GEO bulk
259 ein3 eil1 0.62 >More info 0.04 >More info Col-0 mock Whole seedling Original data GEO bulk
260 2hr continuous KNO3 PrR cell 0.54 >More info 0.12 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
261 root cells endodermis 140mM NaCl 8 hours 0.50 >More info 0.16 >More info root cells endodermis standard 1 hour root cells endodermis Original data
262 M6PR transgenic leaf 100mM NaCl -0.61 >More info -0.05 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
263 Botrytis cinerea 48h 0.50 >More info 0.16 >More info control 48h Original data GEO bulk
264 Light 3day wt -0.51 >More info -0.15 >More info 0h wt Original data
265 seed germinating in countinuous light 24h SL -0.01 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
266 KCl germinant -0.50 >More info -0.15 >More info Millipore Water germinant KCl seedling Original data
267 elevated CO2 low Mg root -0.53 >More info -0.12 >More info atmospheric CO2 low Mg root Root Original data
268 shoots WT 0uM Fe 0.52 >More info 0.11 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
269 amiRAP aerobic -0.13 >More info -0.50 >More info WT aerobic aerobic Original data GEO bulk
270 pnp1-1 3h +P 0.57 >More info 0.05 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
271 Cd 24h root -0.56 >More info -0.05 >More info WT-Untreated Shoot Original data GEO bulk
272 ein3 eil1 JA 0.53 >More info 0.08 >More info JA Whole seedling Original data GEO bulk
273 siliques WT hypoxia 0.60 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
274 myb50 cork 0.62 >More info -0.01 >More info wt cork cork Original data GEO bulk
275 NFA8 roots 2hr KNO3 nitrogen 0.52 >More info 0.07 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
276 WT zebularine 0.51 >More info 0.08 >More info WT mock shoot apical meristem Original data
277 root cells epidermis 140mM NaCl 48 hours 0.58 >More info 0.01 >More info root cells epidermis standard 1 hour root cells epidermis Original data
278 seedlings + TSA 0.51 >More info 0.05 >More info control seedlings 10-day old whole seedling Original data GEO bulk
279 seedling 12h after HZE atm-1 0.51 >More info 0.04 >More info seedling day 1 unirradiated atm-1 12h Original data
280 HairpinZ 4 h (leaf) 0.57 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
281 cca1-lhy before light -0.57 >More info 0.03 >More info before light whole seedlings Original data GEO bulk
282 Pst-DC3000(hrpA)-4hpi -0.02 >More info 0.55 >More info Pst-DC3000-4hpi Original data GEO bulk
283 T6 leaf-drought -0.53 >More info 0.01 >More info T6 leaf-well watered Original data GEO bulk
284 15m light -0.50 >More info -0.02 >More info before light whole seedlings Original data GEO bulk
285 root cells epidermis 140mM NaCl 32 hours 0.53 >More info -0.02 >More info root cells epidermis standard 1 hour root cells epidermis Original data
286 rdr2-1 -0.52 >More info 0.01 >More info Col-0 Original data GEO bulk
287 root - 04% oxygen - 48h -0.05 >More info 0.56 >More info root - 21% oxygen - 48h Original data GEO bulk
288 xyl-grown cell culture- 1h 1mM Suc 0.51 >More info -0.01 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
289 iron minus 24h -0.53 >More info 0.04 >More info iron +24h root Original data GEO bulk
290 AhNAS2-RNAi +Zn 0.53 >More info -0.04 >More info WT +Zn Root Original data GEO bulk
291 cop1 Seedling BL+ABA 0.58 >More info -0.09 >More info WT Seedling BL+ABA Original data GEO bulk
292 toc1-1-61hr 0.54 >More info -0.06 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
293 root cells epidermis 140mM NaCl 8 hours 0.51 >More info -0.03 >More info root cells epidermis standard 1 hour root cells epidermis Original data
294 pnp1-1 1wk -P 0.61 >More info -0.13 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
295 toc1-1-77hr 0.51 >More info -0.03 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
296 Shoot apex inflorescence (after bolting) -0.17 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
297 WT leaf-drought -0.51 >More info 0.04 >More info WT leaf-well watered Original data GEO bulk
298 T8 leaf-drought -0.52 >More info 0.05 >More info T8 leaf-well watered Original data GEO bulk
299 Shoot dark control 24h -0.51 >More info 0.04 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
300 Laer Flg22(Agrobacterium) 2h -0.51 >More info 0.04 >More info Laer Control leaf discs Original data GEO bulk
301 seedling -S Exp -0.03 >More info 0.50 >More info seedling FN Exp seedling Original data
302 lateral root cap-columella pBRN2 8h BL -0.50 >More info 0.04 >More info lateral root cap-columella pBRN2 0h BL brassinosteroid root Original data
303 AsAKiin11 T2 -0.52 >More info 0.06 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
304 chalazal seed coat linear-cotyledon -0.51 >More info 0.07 >More info whole seeds linear-cotyledon Original data GEO bulk
305 P. infestans 6 h (leaf) 0.56 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
306 CCA1-ox 6am non-polysomal -0.10 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
307 dcl2-1 -0.53 >More info 0.14 >More info Col-0 Original data GEO bulk
308 L2.5 mutant -0.50 >More info 0.13 >More info Wt Original data GEO bulk
309 spx1 spx2 resupplied Pi 4h -0.60 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
310 penta Flg22 1h 0.53 >More info -0.20 >More info Laer Flg22 1h leaf discs Original data GEO bulk
311 ABA SA 24h -0.21 >More info 0.53 >More info EtOH 24h 24hr Original data GEO bulk
312 JA 24h -0.55 >More info 0.30 >More info EtOH 24h 24hr Original data GEO bulk
313 control leaf (cmt 5d) -0.44 >More info 0.54 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk