4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 1 h Light IP RNA
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List of experiments correlated with "1 h Light IP RNA"  Help Download transcriptome of top 30
Score Experiment Correlation from
1 h Light IP RNA		 Correlation to
1 h Light IP RNA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 1 h Light IP RNA 1.00 >More info 1.00 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
2 1 h Light Total RNA 0.90 >More info 0.90 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
3 M6PR transgenic leaf 0mM NaCl -0.78 >More info -0.78 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
4 leaf blade in D -0.79 >More info -0.75 >More info leaf blade in WL leaf blades Original data GEO bulk
5 Col(gl) 0mM NaCl -0.74 >More info -0.74 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
6 M6PR transgenic 0mM NaCl -0.80 >More info -0.68 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
7 6h volatiles Sm. R3089 -0.68 >More info -0.80 >More info 6h untreated whole seedling Original data GEO bulk
8 Col(gl) leaf 0mM NaCl -0.74 >More info -0.74 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
9 petiole in D -0.75 >More info -0.73 >More info petiole in WL petioles Original data GEO bulk
10 OsSAP11 expressing 0.76 >More info 0.71 >More info WT seedlings Original data GEO bulk
11 seedlings protease IV -0.76 >More info -0.66 >More info seedlings nontreated control whole seedling Original data
12 Atss3 Light4 0.72 >More info 0.68 >More info Atss3 Dark0.5 Original data GEO bulk
13 petiole in FRD -0.73 >More info -0.67 >More info petiole in WL petioles Original data GEO bulk
14 shoot-10 μM DEX- 6 hr -0.72 >More info -0.68 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
15 SA 4mM -0.71 >More info -0.68 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
16 sfr6 drought 0.72 >More info 0.66 >More info WT drought All aerial tissue Original data GEO bulk
17 Col-0 C2H4 24h -0.78 >More info -0.60 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
18 Day Time Treatment 0.68 >More info 0.69 >More info Day Time Control 1hr white light pulse aerial rosette Original data
19 OsRLCK253 expressing 0.70 >More info 0.67 >More info WT seedlings Original data GEO bulk
20 Col ozone 3h -0.66 >More info -0.71 >More info Col clean-air 3h ozone Original data GEO bulk
21 leaf blade in FRD -0.73 >More info -0.62 >More info leaf blade in WL leaf blades Original data GEO bulk
22 Shoot dark control 7h -0.66 >More info -0.68 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
23 pap1-D -0.73 >More info -0.61 >More info Col-0 aerial part Original data
24 10min Reillumination IP RNA 0.64 >More info 0.70 >More info 1h Dark IP RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
25 low CO2 + light -0.67 >More info -0.66 >More info normal CO2 + light Original data GEO bulk
26 WOX1-1 -0.68 >More info -0.65 >More info Col-0 aerial part Original data
27 low CO2 + dark -0.71 >More info -0.62 >More info normal CO2 + light Original data GEO bulk
28 WT (Col) glucose 0.68 >More info 0.64 >More info WT (Col) glucose seedlings Original data GEO bulk
29 Seedling-HeatStressed POLYSOMESmRNA -0.77 >More info -0.55 >More info Seedling-control POLYSOMESmRNA seedling Original data
30 35S::MBF1c -0.69 >More info -0.63 >More info control Original data GEO bulk
31 WT+H2O2 -0.69 >More info -0.63 >More info WT H2O2 Original data GEO bulk
32 Col leaf 100mM NaCl -0.65 >More info -0.66 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
33 Col leaf 100mM NaCl -0.65 >More info -0.66 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
34 Col 100mM NaCl -0.65 >More info -0.66 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
35 pmr5 pmr6 -0.67 >More info -0.63 >More info Col-0 Original data GEO bulk
36 Shoot submergence 24h -0.66 >More info -0.64 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
37 flu dark 8hours/30 minute light -0.67 >More info -0.63 >More info col dark 8hours/30 minute light Original data GEO bulk
38 SOS1 0mM NaCl -0.73 >More info -0.57 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
39 rosette Light Wounded -0.69 >More info -0.60 >More info rosette Light Control Original data GEO bulk
40 TNT-seedlings -0.63 >More info -0.65 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
41 edr1 36 h powdery mildew -0.73 >More info -0.55 >More info Col-0 36 h powdery mildew Original data GEO bulk
42 anac017-2 AntimycinA 3h 0.70 >More info 0.57 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
43 ataf1-1 mutant Col-0 Bgh inoculated -0.67 >More info -0.60 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
44 Ws 100mM NaCl -0.66 >More info -0.60 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
45 Ws leaf 100mM NaCl -0.66 >More info -0.60 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
46 bio4-1 mutant leaves -0.60 >More info -0.66 >More info WT leaves leaves Original data GEO bulk
47 ebs Pool -0.70 >More info -0.55 >More info Ler Pool seedling Original data GEO bulk
48 Col-0 9 hpi A. brassicicola -0.66 >More info -0.59 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
49 Dark 6h ivd -0.72 >More info -0.53 >More info 0h ivd Original data
50 WT roots - Fe -0.60 >More info -0.65 >More info WT roots + Fe Roots Original data GEO bulk
51 Col-Luc WT 3h antimycin A -0.71 >More info -0.54 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
52 Col-0 (t-zeatin 3 h) 0.68 >More info 0.56 >More info Col-0 Original data Cytokinin treatment of seedlings
53 3x(p) -0.58 >More info -0.66 >More info 2x two week old seedlings Original data
54 4d red light grown hmr-5 seedlings -0.69 >More info -0.55 >More info 4d red light grown WT(Col-0) seedlings Original data
55 sfr6 control 0.71 >More info 0.52 >More info WT control All aerial tissue Original data GEO bulk
56 shl-2 Pool -0.58 >More info -0.65 >More info Ler Pool seedling Original data GEO bulk
57 npr1 sni1 SA -0.70 >More info -0.53 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
58 Seedling-HeatStressed TOTALmRNA -0.70 >More info -0.53 >More info Seedling-control TOTALmRNA seedling Original data
59 hrpA fliC 7h -0.68 >More info -0.54 >More info Mock 7h hrpA fliC Original data GEO bulk
60 6h volatiles Sp. HRO-C48 -0.65 >More info -0.57 >More info 6h untreated whole seedling Original data GEO bulk
61 pip3 At2g19270 TDNA 9 -0.59 >More info -0.63 >More info Col-0 whole plant Original data GEO bulk
62 wavy -0.65 >More info -0.57 >More info WT Original data GEO bulk
63 shoot-10 μM DEX- 12 hr -0.62 >More info -0.60 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
64 seedlings-week-old RECA1-overexpressing
transgenic		 -0.70 >More info -0.52 >More info seedlings-week-old Col-0 seedlings Original data
65 WT+chitooctaose -0.60 >More info -0.62 >More info WT+water chitooctaose seedlings Original data GEO bulk
66 WT (Col-0) inflorescence drought day 4 -0.65 >More info -0.57 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
67 GST NPP1 4 h (leaf) -0.65 >More info -0.56 >More info Mock 4 h (leaf) Original data Elicitor treatments
68 tunicamycin 0.57 >More info 0.64 >More info DMF Original data GEO bulk
69 30m light 0.55 >More info 0.66 >More info before light whole seedlings Original data GEO bulk
70 Nicotinamide-69hr -0.68 >More info -0.53 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
71 col-5 hrpA 12h -0.66 >More info -0.55 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
72 phyB mutant 16C 4hrs -0.74 >More info -0.47 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
73 Col-0 low oxygen -0.66 >More info -0.54 >More info Col-0 Original data GEO bulk
74 flu over-tAPX -0.66 >More info -0.54 >More info WT Col Original data GEO bulk
75 seedling 1.5h after HZE atm-1 -0.62 >More info -0.58 >More info seedling day 1 unirradiated atm-1 1.5h Original data
76 ein2-1 9 hpi A. brassicicola -0.62 >More info -0.57 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
77 mbd6 mutant thaliana 10-day-old seedling -0.71 >More info -0.48 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
78 hrpA 7h -0.60 >More info -0.59 >More info Mock 7h hrpA Original data GEO bulk
79 WT flg22 2h -0.58 >More info -0.61 >More info WT 0h Leaf tissue Original data GEO bulk
80 Nicotinamide-93hr -0.66 >More info -0.52 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
81 MYB12OX/tt4 -0.55 >More info -0.63 >More info Col-0 aerial part Original data
82 Pseudomonas -0.54 >More info -0.64 >More info Control pseudomonas treated whole seedling Original data GEO bulk
83 pepr1-1 Pepr2-3 +Pep2 2h 0.66 >More info 0.52 >More info WT +Pep2 2h Pep2 Original data GEO bulk
84 mkk1/mkk2 24h BTH rep -0.62 >More info -0.56 >More info Col-0 24h BTH rep Original data GEO bulk
85 2 hr Hypoxia IP RNA -0.58 >More info -0.60 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
86 oligomycin 4 h -0.73 >More info -0.44 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
87 Shoot dark control 24h -0.55 >More info -0.62 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
88 anti-sense for AtAOX1a -0.57 >More info -0.60 >More info WT Original data GEO bulk
89 Flagellin 4 h (leaf) -0.64 >More info -0.53 >More info Mock 4 h (leaf) Original data Elicitor treatments
90 FLIGHT TAGESB plate6 SHOOTS -0.67 >More info -0.50 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
91 MYB12OX -0.69 >More info -0.48 >More info Col-0 aerial part Original data
92 coi1-16 ein2 sid2 ctrl 0.74 >More info 0.43 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
93 CBF3 0mM NaCl -0.65 >More info -0.51 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
94 Atss3 Light1 0.63 >More info 0.53 >More info Atss3 Dark0.5 Original data GEO bulk
95 CMV-A2b mutant -0.68 >More info -0.48 >More info Mock-At Aerial tissues Original data GEO bulk
96 mkk1/mkk2 control rep -0.61 >More info -0.55 >More info Col-0 Time 0 rep Original data GEO bulk
97 IMI 4mM -0.64 >More info -0.52 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
98 Nicotinamide-73hr -0.66 >More info -0.50 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
99 Night Time Treatment 0.57 >More info 0.59 >More info Night Time Control 1hr white light pulse aerial rosette Original data
100 WT-NOCO2 INFECTED -0.58 >More info -0.58 >More info WT-MOCK Original data GEO bulk
101 flu -0.62 >More info -0.53 >More info WT Col Original data GEO bulk
102 msh1 albino -0.59 >More info -0.56 >More info WT aerial part Original data GEO bulk
103 Col-0 DEX Shade -0.63 >More info -0.52 >More info Col-0 DEX WL seedlings Original data
104 pmr5 -0.61 >More info -0.54 >More info Col-0 Original data GEO bulk
105 oas-a1.1 root 0.41 >More info 0.74 >More info WT-Untreated Root Original data GEO bulk
106 3x(m) -0.52 >More info -0.62 >More info 2x two week old seedlings Original data
107 Light 3day wt 0.65 >More info 0.49 >More info 0h wt Original data
108 Col-0-avrB-6h -0.58 >More info -0.56 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
109 pvip1 pvip2 -0.57 >More info -0.57 >More info Col-0 whole rosettes Original data GEO bulk
110 CT101 ozone -0.71 >More info -0.42 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
111 Dark 3day ivd -0.73 >More info -0.40 >More info 0h ivd Original data
112 WT hypoxia -0.60 >More info -0.52 >More info WT normoxia whole rosette Original data
113 Light 4h polysome-bound 0.64 >More info 0.48 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
114 hrcC -0.62 >More info -0.50 >More info MgCl2 5x10^7 cfu/ml DC3000 hrcC mutant Original data GEO bulk
115 ARR22-ox 0.64 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings
116 Te ozone -0.73 >More info -0.39 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
117 +1.6 mM Tween 20 1 h. -0.58 >More info -0.54 >More info +distilled water 1 h. Original data GEO bulk
118 WT Col-0 Bgh inoculated -0.61 >More info -0.51 >More info WT Col-0 Un-inoculated Original data GEO bulk
119 Lipopolysaccaride4 h (leaf) -0.50 >More info -0.62 >More info Mock 4 h (leaf) Original data Elicitor treatments
120 CAX1/CAX3 mutant -0.68 >More info -0.43 >More info Col whole plant Original data GEO bulk
121 Col-0 ozone- (control genotype coi1-16 ein2 sid2) -0.71 >More info -0.40 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
122 npr1 sni1 brca2a SA 0.61 >More info 0.50 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
123 GST 4 h (leaf) -0.50 >More info -0.61 >More info Mock 4 h (leaf) Original data Elicitor treatments
124 wnk8-1 untreated 0.50 >More info 0.61 >More info Col-0 untreated seedlings Original data GEO bulk
125 Col-0 2HS -0.49 >More info -0.62 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
126 mkk2 24h BTH rep -0.51 >More info -0.59 >More info Col-0 24h BTH rep Original data GEO bulk
127 E.coli TUV86 2 fliC 7h -0.55 >More info -0.55 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
128 npr1 sni1 ssn2 0.64 >More info 0.46 >More info npr1 sni1 water water seedling Original data GEO bulk
129 seedling 1.5h after HZE WT -0.65 >More info -0.45 >More info seedling day 1 unirradiated WT 1.5h Original data
130 pap1-D/tt4 -0.54 >More info -0.56 >More info Col-0 aerial part Original data
131 ceh1 mutant -0.59 >More info -0.51 >More info Parent line Original data
132 Rsch 8h -0.57 >More info -0.53 >More info Rsch CA Leaves Original data
133 erf104-ko Flg22 4h -0.59 >More info -0.51 >More info erf104-ko H2O 4h Original data GEO bulk
134 oligomycin 1 h -0.64 >More info -0.46 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
135 rosette leaves lcr -0.57 >More info -0.53 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
136 edr1 18 h powdery mildew -0.62 >More info -0.48 >More info Col-0 18 h powdery mildew Original data GEO bulk
137 tt4 -0.49 >More info -0.61 >More info Col-0 aerial part Original data
138 CMP 4hr -0.67 >More info -0.42 >More info Acetone 4hr root Original data GEO bulk
139 Nicotinamide-65hr -0.68 >More info -0.41 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
140 cpr5npr1 -0.46 >More info -0.63 >More info WT(COL) Original data GEO bulk
141 WT 2-4h Xanthomonas -0.44 >More info -0.65 >More info WT T0 Original data GEO bulk
142 9 hr Hypoxia IP RNA -0.58 >More info -0.51 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
143 rosette leaves fdh -0.62 >More info -0.47 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
144 Col-0 ozone -0.71 >More info -0.38 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
145 ex2 flu dark 8hours/30 minute light -0.52 >More info -0.57 >More info col dark 8hours/30 minute light Original data GEO bulk
146 AgNO3 3 h -0.58 >More info -0.51 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
147 aerial organ callus inducing medium 12 h -0.51 >More info -0.57 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
148 penta mutant (higher order mutant) -0.55 >More info -0.53 >More info col control (higher order mutant) Original data GEO bulk
149 WT AntimycinA 3h -0.59 >More info -0.49 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
150 sfr2 control 0.63 >More info 0.45 >More info WT control All aerial tissue Original data GEO bulk
151 4C 2h(SOIL) -0.53 >More info -0.54 >More info 4C 0h(SOIL) Original data GEO bulk
152 cs26 short-day 0.65 >More info 0.42 >More info Leaves-WT-SD leaf Original data GEO bulk
153 chito-octamer -0.58 >More info -0.49 >More info Col Mock Original data GEO bulk
154 Col-0 ozone- (control genotype tga2 tag5 tga6) -0.70 >More info -0.37 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
155 E.coli 0157 H7 7h -0.48 >More info -0.59 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
156 cpr5scv1 -0.48 >More info -0.59 >More info WT(COL) Original data GEO bulk
157 Nicotinamide-49hr -0.59 >More info -0.47 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
158 IRP1-OE-Fe--shoot -0.55 >More info -0.51 >More info COL-0-Fe--shoot shoot Original data
159 Atss3 Dark4 0.57 >More info 0.49 >More info Atss3 Dark0.5 Original data GEO bulk
160 Col whole leaf 5dpi -0.53 >More info -0.53 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
161 Dex-rga(delta17) 4h GA4 0.45 >More info 0.61 >More info Vector 4h GA4 shoots Original data GEO bulk
162 Te 8h -0.52 >More info -0.53 >More info Te CA Leaves Original data
163 coi1-2 -0.61 >More info -0.44 >More info Col-0 mock Whole seedling Original data GEO bulk
164 gh3.5-1D 48 hpi -0.56 >More info -0.49 >More info Col-0 uninoculated Original data GEO bulk
165 Cycloheximide 3 h -0.56 >More info -0.49 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
166 chito-tetramer -0.58 >More info -0.47 >More info Col Mock Original data GEO bulk
167 12h volatiles Sm. R3089 -0.53 >More info -0.51 >More info 12h untreated whole seedling Original data GEO bulk
168 35S:RPS4 eds1-2 24h 0.60 >More info 0.44 >More info 35S:RPS4 24h leaves Original data
169 efr-1 +elf18 10h 0.51 >More info 0.53 >More info WT +elf18 10h elf18 Original data GEO bulk
170 bHLH122 ox 0.54 >More info 0.50 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
171 aerial organ callus inducing medium 48 h -0.56 >More info -0.48 >More info aerial organ callus inducing medium 0 h 48 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
172 RGA-GR-DEX -0.53 >More info -0.51 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
173 35S:RPS4 eds1-2 8h 0.59 >More info 0.45 >More info 35S:RPS4 8h leaves Original data
174 aerial organ callus inducing medium 96 h -0.56 >More info -0.48 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
175 WT 3H Cold -0.44 >More info -0.60 >More info WT control Original data GEO bulk
176 Leafminer locally damaged thaliana seedlings -0.56 >More info -0.47 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
177 Col-0 under 4 days salt -0.57 >More info -0.46 >More info Col-0 under control 4 days salt treatment rosette Original data
178 Col whole leaf 7dpi -0.55 >More info -0.48 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
179 HSP90 Reduced RNAi-B1 -0.57 >More info -0.46 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
180 L2.4 mutant 0.50 >More info 0.53 >More info Wt Original data GEO bulk
181 aba2 1% sucrose 12-day-old -0.57 >More info -0.46 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
182 UV Stress 24 h (shoot) -0.55 >More info -0.47 >More info Stress mock 24 h (shoot) Original data Stress treatments
183 Col-0 SA -0.62 >More info -0.40 >More info Col-0 Original data GEO bulk
184 hepta mutant (higher order mutant) -0.58 >More info -0.44 >More info col control (higher order mutant) Original data GEO bulk
185 til1-1 22C -0.67 >More info -0.35 >More info Col-0 22C Original data GEO bulk
186 sex1-3 -0.38 >More info -0.64 >More info Col-WT leaves Original data GEO bulk
187 AvrRpm1 2 h (leaf) -0.53 >More info -0.48 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
188 miR mutant (higher order mutant) -0.58 >More info -0.43 >More info col control (higher order mutant) Original data GEO bulk
189 Dark 2day wt -0.59 >More info -0.42 >More info 0h wt Original data
190 sid2-2 9 hpi A. brassicicola -0.57 >More info -0.44 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
191 HSP90 Reduced RNAi-A2 -0.53 >More info -0.48 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
192 mutant acs6E (single mutant) 0.59 >More info 0.42 >More info col control (single mutant) Original data GEO bulk
193 roottip hypoxia total -0.46 >More info -0.55 >More info roottip control total Original data GEO bulk
194 60m light 0.42 >More info 0.59 >More info before light whole seedlings Original data GEO bulk
195 bri1-116 0.28 >More info 0.73 >More info Col seedling Original data GEO bulk
196 aox1a:rpoTmp MLD stressed 0.56 >More info 0.44 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
197 mbd4 mutant thaliana 10-day-old seedling -0.64 >More info -0.36 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
198 pad4-PsmES4326-24hpi 0.64 >More info 0.36 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
199 Light 4h steady-state 0.55 >More info 0.45 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
200 OE WRKY63.3 high light -0.51 >More info -0.49 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
201 pmr4-1 powdery mildew -0.52 >More info -0.48 >More info WT powdery mildew uninoculated Original data GEO bulk
202 anac017-1 H2O2 3h 0.48 >More info 0.52 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
203 Rsch 1d -0.47 >More info -0.53 >More info Rsch CA Leaves Original data
204 xyl-grown cell culture- 1h 1mM Suc 0.28 >More info 0.72 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
205 gun4-1 -0.58 >More info -0.41 >More info WT Col-0 seedling Original data GEO bulk
206 OE-HRA1 NS  -0.54 >More info -0.45 >More info Col-0NS 2 h non-stress (2NS) 7-day-old seedlings Original data
207 FHY3p dark+DEX 0.50 >More info 0.49 >More info FHY3p dark+mock Original data GEO bulk
208 col-5 DC3000 12h -0.61 >More info -0.38 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
209 Dark 6h wt -0.61 >More info -0.38 >More info 0h wt Original data
210 TA induced -0.47 >More info -0.52 >More info Methanol TA Suspension cells Original data GEO bulk
211 1.5 hr ammonium -0.46 >More info -0.53 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
212 CHLM overexpression 0.48 >More info 0.51 >More info Col-0 estr green tissue Original data GEO bulk
213 opr3 OPDA 0.5 h -0.33 >More info -0.66 >More info opr3 0 h Original data GEO bulk
214 Seedling KUA1-IOX est -0.45 >More info -0.54 >More info Seedling KUA1-IOX mock Original data
215 Rsch 3d -0.48 >More info -0.51 >More info Rsch CA Leaves Original data
216 Col 8h -0.48 >More info -0.51 >More info Col CA Leaves Original data
217 Dark 1day ivd -0.57 >More info -0.41 >More info 0h ivd Original data
218 Dark 3day hml -0.59 >More info -0.39 >More info 0h hml Original data
219 Dark 3day wt -0.60 >More info -0.38 >More info 0h wt Original data
220 C24 ozone -0.65 >More info -0.33 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
221 Mutant gh3.5-1D (AvrRpt2) -0.50 >More info -0.48 >More info Col-0 (AvrRpt2) Original data GEO bulk
222 Dark 6h hml -0.58 >More info -0.40 >More info 0h hml Original data
223 P.syringae vir 4 h (leaf) -0.51 >More info -0.47 >More info Mock 4 h (leaf) Original data Elicitor treatments
224 WT seedlings MV -0.54 >More info -0.43 >More info WT seedlings control Seedlings Original data GEO bulk
225 AvrRpt2 Col-0 6hpi -0.62 >More info -0.35 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
226 ahg2-1sid2-2 0.65 >More info 0.32 >More info WT (Col) control Original data GEO bulk
227 Atss3 Dark8 0.56 >More info 0.41 >More info Atss3 Dark0.5 Original data GEO bulk
228 detached inflorescences 24h -0.64 >More info -0.33 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
229 Mutant coi1(leaf) 0.52 >More info 0.45 >More info Col-0 (leaf) Original data GEO bulk
230 C24 24h cold 0.59 >More info 0.38 >More info Col 24h cold leaf Original data GEO bulk
231 Dark 1day wt -0.59 >More info -0.38 >More info 0h wt Original data
232 CMP 24hr -0.60 >More info -0.37 >More info Acetone 24hr root Original data GEO bulk
233 triploid female excess 0.27 >More info 0.70 >More info tetraploid Original data GEO bulk
234 tetraploid -0.47 >More info -0.50 >More info diploid Original data GEO bulk
235 CMV-WT -0.56 >More info -0.40 >More info Mock-At Aerial tissues Original data GEO bulk
236 CLO 4mM -0.69 >More info -0.27 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
237 rosette Dark Wounded -0.53 >More info -0.43 >More info rosette Dark Control Original data GEO bulk
238 8hr-pH4.5 -0.55 >More info -0.41 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
239 npr1-3 MOCK 48h 0.50 >More info 0.46 >More info Col-0 MOCK 48h Original data GEO bulk
240 WT Bc inoculation 14h -0.58 >More info -0.38 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
241 gpa1 +ABA LF -0.50 >More info -0.46 >More info Col-0 +ABA LF Leaves of five week-old plants Original data GEO bulk
242 Dark 2day hml -0.58 >More info -0.38 >More info 0h hml Original data
243 ORS1 induced -0.31 >More info -0.65 >More info mock-induced rosette leaves Original data GEO bulk
244 opr3 OPDA 2 h -0.27 >More info -0.69 >More info opr3 0 h Original data GEO bulk
245 fls1-3 -0.46 >More info -0.50 >More info Col-0 Rosette leaves Original data
246 WT Red light 18h 0.53 >More info 0.42 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
247 npr1 sni1 ssn2 SA 0.60 >More info 0.35 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
248 AtLysM RLK1 mutant chitooctaose 0.53 >More info 0.42 >More info WT chitooctaose Original data GEO bulk
249 WT salt 12 h 0.60 >More info 0.35 >More info WT salt 0 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
250 cat2-2; 8h switch to ambient CO2 concentrations; -0.41 >More info -0.54 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
251 Fenclorim 4hr -0.59 >More info -0.35 >More info Acetone 4hr root Original data GEO bulk
252 tor mutant glucose -0.52 >More info -0.42 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
253 12h-DC3000 avrRpm1 -0.34 >More info -0.60 >More info 12h-DC3000 leaves Original data GEO bulk
254 cpr5 -0.44 >More info -0.50 >More info WT(COL) Original data GEO bulk
255 coi1-16 ein2 sid2 ozone -0.66 >More info -0.27 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
256 4C 1h -0.53 >More info -0.40 >More info 4C 0h Original data GEO bulk
257 Shoot apex inflorescence (after bolting) 0.28 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
258 high-R:FR bud axillary 0.39 >More info 0.54 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
259 ice1 control -0.50 >More info -0.43 >More info WT control Original data GEO bulk
260 wrky33 Bc inoculation 14h -0.64 >More info -0.29 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
261 miR393 0h 0.34 >More info 0.59 >More info WT 0h Leaf tissue Original data GEO bulk
262 gpa1 -ABA GC 0.36 >More info 0.57 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
263 gun1-1 +lincomycin 0.42 >More info 0.51 >More info Col-0 +lincomycin Original data GEO bulk
264 P.p 10.5hai -0.56 >More info -0.36 >More info At-Control roots Original data GEO bulk
265 6h +Pi 0.53 >More info 0.39 >More info 6h -Pi root Original data GEO bulk
266 camta1/2/3 warm -0.53 >More info -0.38 >More info WT warm entire aerial part Original data GEO bulk
267 camta1-2 -0.40 >More info -0.51 >More info Col-0-WT Original data GEO bulk
268 A2hsfa1-ox in quadruple mutant 0.57 >More info 0.34 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
269 Nicotinamide-89hr -0.61 >More info -0.30 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
270 rGRF3x35S:GIF -0.32 >More info -0.59 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
271 Dark 1day hml -0.52 >More info -0.38 >More info 0h hml Original data
272 dde2-2 9 hpi A. brassicicola -0.55 >More info -0.35 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
273 Myzus persicae saliva -0.54 >More info -0.36 >More info Control Original data GEO bulk
274 root Dosed gold -0.55 >More info -0.35 >More info root No gold .125 mM gold 24 h roots Original data
275 aphid saliva treated -0.54 >More info -0.36 >More info control aphid saliva treated leaves Original data GEO bulk
276 gul2-1 bri1-5 mutant -0.53 >More info -0.37 >More info WT 7 day-old whole seedlings Original data
277 gul2-1 mutant -0.53 >More info -0.37 >More info WT 7 day-old whole seedlings Original data
278 0.125 mM gold 24 h -0.55 >More info -0.35 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
279 8h-DC3000 avrRpm1 -0.54 >More info -0.36 >More info 8h-DC3000 leaves Original data GEO bulk
280 COL-0-Fe--shoot 0.54 >More info 0.36 >More info COL-0-Ctrl--shoot shoot Original data
281 15m.KCl -0.51 >More info -0.39 >More info To. KCl 14 day old Roots Original data GEO bulk
282 Pst-DC3000(avrRpm1)-4hpi -0.39 >More info -0.51 >More info Pst-DC3000-4hpi Original data GEO bulk
283 xyl-grown cell culture- 1h 1mM Fru 0.30 >More info 0.60 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
284 Apex mir-3TCP 14DAS 0.55 >More info 0.34 >More info Apex Col 14DAS Original data GEO bulk
285 ms35 silique stage 5 0.34 >More info 0.55 >More info Ler .5 anther and filament Original data GEO bulk
286 mutant-line1135 0.53 >More info 0.36 >More info WT-control whole plant Original data GEO bulk
287 ddm1-12 0.53 >More info 0.36 >More info wt whole seedling Original data GEO bulk
288 C58 3hpi -0.39 >More info -0.50 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
289 15m.KNO3 -0.35 >More info -0.54 >More info To. KNO3 14 day old Roots Original data GEO bulk
290 seed germinating in countinuous light 24h SL 0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
291 toc1-1-77hr -0.56 >More info -0.32 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
292 gai Control -0.54 >More info -0.34 >More info Laer Control leaf discs Original data GEO bulk
293 ahg2-1 0.63 >More info 0.25 >More info WT (Col) control Original data GEO bulk
294 Col whole leaf 6hpi -0.53 >More info -0.35 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
295 ARR22-ox (t-zeatin 3 h) -0.53 >More info -0.35 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
296 P.p 6hai -0.58 >More info -0.30 >More info At-Control roots Original data GEO bulk
297 shoots bhlh100/101 100uM Fe -0.61 >More info -0.26 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
298 Te 1d -0.37 >More info -0.50 >More info Te CA Leaves Original data
299 hog1-7 0.52 >More info 0.34 >More info wt whole seedling Original data GEO bulk
300 mutant-line774 0.52 >More info 0.34 >More info WT-control whole plant Original data GEO bulk
301 shoot hypoxia pRBCS 0.17 >More info 0.69 >More info shoot hypoxia total Original data GEO bulk
302 oas-a1.1 Cd 18h -0.36 >More info -0.50 >More info Cd 18h root Root Original data GEO bulk
303 FLIGHT TAGES 2B plate6 HYPOCOTYLS -0.57 >More info -0.29 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
304 seedling 24h after Gamma atm-1 0.35 >More info 0.50 >More info seedling day 2 unirradiated atm-1 24h Original data
305 exo70A1 -0.51 >More info -0.33 >More info Col-0 whole plant Original data GEO bulk
306 rGRF -0.56 >More info -0.28 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
307 Laer treat paclobutrazol (PAC) -0.54 >More info -0.30 >More info Laer Control leaf discs Original data GEO bulk
308 P. infestans 6 h (leaf) -0.69 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
309 Cor 10h -0.52 >More info -0.31 >More info Mock 10h Cor Original data GEO bulk
310 cpr5npr1svi1 -0.28 >More info -0.55 >More info WT(COL) Original data GEO bulk
311 AtLysM RLK1 mutant water 0.56 >More info 0.26 >More info WT water Original data GEO bulk
312 P.syringae AvrRpt2 4 h (leaf) -0.50 >More info -0.32 >More info Mock 4 h (leaf) Original data Elicitor treatments
313 BLM+INA -0.56 >More info -0.25 >More info CK BLM and INA seedling Original data
314 P.p 30hai -0.50 >More info -0.31 >More info At-Control roots Original data GEO bulk
315 Col-0 shade -0.51 >More info -0.30 >More info Col-0 light seedlings Original data GEO bulk
316 vte1-1 3d vernalization 0.62 >More info 0.18 >More info WT 3d vernalization Original data GEO bulk
317 pho1 -0.53 >More info -0.27 >More info Col2WT Original data GEO bulk
318 WT 30μM arsenate 8 hours. -0.54 >More info -0.26 >More info WT control (not supplemented). Original data
319 opr3 JA 2 h -0.29 >More info -0.51 >More info opr3 0 h Original data GEO bulk
320 Col-0 37C -0.57 >More info -0.23 >More info Col-0 22C Original data GEO bulk
321 opr3 JA 0.5 h -0.27 >More info -0.52 >More info opr3 0 h Original data GEO bulk
322 root protoplasts 40 mM NaCl -0.50 >More info -0.28 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
323 sps1 0.50 >More info 0.28 >More info WT seedling Original data GEO bulk
324 Protoplast Induced -0.24 >More info -0.54 >More info Uninduced Original data GEO bulk
325 seedling h S Exp 0.26 >More info 0.52 >More info seedling -S Exp seedling Original data
326 Mutant arf2-6 0.56 >More info 0.21 >More info Col Original data GEO bulk
327 FLIGHT TAGESB plate -0.63 >More info -0.14 >More info GROUND CONTROL TAGESB plate Original data
328 mbd11 mutant thaliana 10-day-old seedling -0.50 >More info -0.26 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
329 rdr1-1 0.50 >More info 0.26 >More info Col-0 Original data GEO bulk
330 mutant acs2B (single mutant) 0.60 >More info 0.16 >More info col control (single mutant) Original data GEO bulk
331 Osmotic Stress 24 h (root) -0.52 >More info -0.24 >More info Stress mock 24 h (root) Original data Stress treatments
332 npr1 -0.53 >More info -0.22 >More info WT(COL) Original data GEO bulk
333 Col PSTDC3000 24h -0.62 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
334 Col-0-3h IAA -0.55 >More info -0.20 >More info Col-0-0h IAA whole plant Original data GEO bulk
335 Laer Flg22 1h -0.50 >More info -0.24 >More info Laer Control leaf discs Original data GEO bulk
336 4d red light grown hmr-22 seedlings -0.53 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
337 GiantCell Root 0.24 >More info 0.50 >More info Control Root laser captured giant cells Original data GEO bulk
338 Col leaves 120h LT 0.56 >More info 0.16 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
339 35S-MIF1 light grown -0.16 >More info -0.56 >More info Light-grown WT control Original data GEO bulk
340 Shoot submergence 7h -0.72 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
341 Col light-dark EtOH -0.60 >More info -0.12 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
342 Salt Stress 24 h (root) -0.54 >More info -0.18 >More info Stress mock 24 h (root) Original data Stress treatments
343 Nicotinamide-61hr -0.52 >More info -0.19 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
344 Infected Col-0 leaf 0.55 >More info 0.15 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
345 calcicole ecotype Cal-0 -0.54 >More info -0.16 >More info Col-4 1 mM CaCl2 Original data GEO bulk
346 HairpinZ 4 h (leaf) -0.66 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
347 tfl1-1-23ºC -0.65 >More info -0.04 >More info WT-23ºC Original data GEO bulk
348 E.orontii Infection 3 day -0.15 >More info -0.53 >More info Uninfection 3 day Original data Elicitor treatments
349 Whole root - low pH 3H -0.17 >More info -0.51 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
350 seedling 3h after HZE WT -0.69 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
351 arr10 arr12 0.53 >More info 0.13 >More info DMSO--WT DMSO roots Original data GEO bulk
352 short 17-degree- 0.02 >More info 0.64 >More info control short Original data GEO bulk
353 shoot control p35S 0.07 >More info 0.54 >More info shoot control total Original data GEO bulk
354 Dark 2day ivd -0.60 >More info -0.01 >More info 0h ivd Original data
355 rdr6-11 -0.51 >More info -0.10 >More info Col-0 aerial tissue Original data
356 pif4pif5 mut 1h FR 0.53 >More info 0.07 >More info WT 1h FR Original data GEO bulk
357 Truncated AC2 T2 0.51 >More info 0.08 >More info AC2 and AC2del control T2 two days post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
358 gpa1 -ABA LF -0.57 >More info -0.02 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
359 root - 08% oxygen - 2h -0.09 >More info -0.50 >More info root - 21% oxygen - 2h Original data GEO bulk
360 noa1-2 -0.50 >More info -0.08 >More info Col-0 whole seedlings Original data GEO bulk
361 amiRAP aerobic 0.05 >More info 0.52 >More info WT aerobic aerobic Original data GEO bulk
362 siliques WT hypoxia -0.58 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
363 ago4-1 -0.50 >More info -0.02 >More info WT La-er whole plants Original data GEO bulk
364 opr3 OPDA 8 h 0.03 >More info -0.55 >More info opr3 0 h Original data GEO bulk
365 phyB mutant 16C 10hrs 0.51 >More info -0.00 >More info 16C 10h whole plant excluding roots Original data GEO bulk
366 CeO2 germinant -0.02 >More info 0.52 >More info Millipore Water germinant CeO2 seedling Original data
367 Col-0 24hpi A. brassicicola -0.51 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
368 MPK6 ox Shoot Hypoxia -0.52 >More info 0.03 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
369 shoot hypoxia pGL2 -0.02 >More info 0.50 >More info shoot hypoxia total Original data GEO bulk
370 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
371 IAA7mII over-expressor IAA Treated -0.23 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
372 light 0.59 >More info -0.18 >More info dark light seedling Original data GEO bulk
373 shoot control pGL2 -0.17 >More info 0.52 >More info shoot control total Original data GEO bulk
374 Laer pretreat GA Flg22 1h -0.39 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
375 Col BTH -0.48 >More info 0.67 >More info Col rosettes Original data GEO bulk
376 siliques AtHb1 control -0.38 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
377 Heat shock optimum -0.59 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
378 Light 3day hml 0.53 >More info -0.50 >More info 0h hml Original data
379 Col0-PsmES4326-24hpi -0.62 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
380 Leafminer damaged seedlings -0.56 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk