4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on opr3 OPDA 0.5 h
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Score Experiment Correlation from
opr3 OPDA 0.5 h		 Correlation to
opr3 OPDA 0.5 h		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 opr3 OPDA 0.5 h 1.00 >More info 1.00 >More info opr3 0 h Original data GEO bulk
2 opr3 JA 0.5 h 0.88 >More info 0.73 >More info opr3 0 h Original data GEO bulk
3 opr3 OPDA 2 h 0.84 >More info 0.72 >More info opr3 0 h Original data GEO bulk
4 opr3 OPDA 8 h 0.59 >More info 0.69 >More info opr3 0 h Original data GEO bulk
5 Protoplast Induced 0.65 >More info 0.47 >More info Uninduced Original data GEO bulk
6 4C 2h(SOIL) 0.63 >More info 0.47 >More info 4C 0h(SOIL) Original data GEO bulk
7 Heat shock optimum 0.43 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
8 Col leaf 100mM NaCl 0.66 >More info 0.41 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
9 Col leaf 100mM NaCl 0.66 >More info 0.41 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
10 Col 100mM NaCl 0.66 >More info 0.41 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
11 Apex mir-3TCP 14DAS -0.67 >More info -0.40 >More info Apex Col 14DAS Original data GEO bulk
12 FLIGHT TAGESB plate6 ROOTS 0.73 >More info 0.31 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
13 myb61 cork 0.54 >More info 0.49 >More info wt cork cork Original data GEO bulk
14 Dex-rga(delta17) 4h GA4 -0.65 >More info -0.36 >More info Vector 4h GA4 shoots Original data GEO bulk
15 A. halleri control-root 0.60 >More info 0.41 >More info A. petraea control-root Original data GEO bulk
16 Light 0.60 >More info 0.41 >More info Control Original data GEO bulk
17 WT-Dry 0.60 >More info 0.41 >More info WT-CK dehydration treatment 1h Original data
18 IAA 0.5 h 0.35 >More info 0.66 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
19 WT NAA 1h 0.47 >More info 0.54 >More info WT 0h Leaf tissue Original data GEO bulk
20 WT +Pep2 2h 0.65 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
21 Shoot apex inflorescence (after bolting) 0.35 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
22 seed germinating in countinuous light 24h SL 0.33 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
23 1 h Light IP RNA -0.66 >More info -0.33 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
24 OsRLCK253 expressing -0.54 >More info -0.45 >More info WT seedlings Original data GEO bulk
25 mtf1-1 -0.66 >More info -0.33 >More info Col0 root Original data
26 Laer pretreat GA Flg22 1h 0.28 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
27 OsSAP11 expressing -0.49 >More info -0.50 >More info WT seedlings Original data GEO bulk
28 Leafminer damaged seedlings 0.43 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
29 35S:RPS4 eds1-2 2h -0.66 >More info -0.32 >More info 35S:RPS4 2h leaves Original data
30 35S::MBF1c 0.67 >More info 0.29 >More info control Original data GEO bulk
31 seedling 12h after HZE WT 0.65 >More info 0.31 >More info seedling day 1 unirradiated WT 12h Original data
32 3x(m) 0.45 >More info 0.51 >More info 2x two week old seedlings Original data
33 WT+chitooctaose 0.67 >More info 0.28 >More info WT+water chitooctaose seedlings Original data GEO bulk
34 AtLysM RLK1 mutant chitooctaose -0.66 >More info -0.28 >More info WT chitooctaose Original data GEO bulk
35 root protoplasts 40 mM NaCl 0.59 >More info 0.35 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
36 cngc1-3 0.69 >More info 0.25 >More info Col-0 root Original data GEO bulk
37 4C 1h 0.42 >More info 0.52 >More info 4C 0h Original data GEO bulk
38 seedling 6h after HZE WT 0.68 >More info 0.25 >More info seedling day 1 unirradiated WT 6h Original data
39 Col BTH 0.26 >More info 0.67 >More info Col rosettes Original data GEO bulk
40 npr1 sni1 brca2a SA -0.60 >More info -0.33 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
41 M6PR transgenic leaf 0mM NaCl 0.57 >More info 0.36 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
42 S5 0.53 >More info 0.39 >More info WT Original data GEO bulk
43 Homozygous-AtcesA4 -0.55 >More info -0.37 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
44 15m.KCl 0.65 >More info 0.27 >More info To. KCl 14 day old Roots Original data GEO bulk
45 Imbibed 24 h ABA 3uM (seed) -0.59 >More info -0.33 >More info Imbibed 24 h (seed) Original data Effect of ABA during seed imbibition
46 npr1 sni1 SA 0.70 >More info 0.22 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
47 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.58 >More info -0.34 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
48 C2H2 ZF TDNA mutant -0.72 >More info -0.20 >More info Col-WT mature pollen Original data GEO bulk
49 AsAKiin11 T2 -0.51 >More info -0.40 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
50 INA 0.61 >More info 0.30 >More info CK INA seedling Original data
51 WT 6H Cold 0.57 >More info 0.34 >More info WT control Original data GEO bulk
52 Leaf wounded 0.60 >More info 0.31 >More info Leaf control vegetative leaf Original data GEO bulk
53 light-hs -0.71 >More info -0.20 >More info light-control seedling Original data
54 WT (Col-0) inflorescence drought day 4 0.57 >More info 0.34 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
55 siliques AtHb1 control 0.38 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
56 A. halleri highZn-leaf -0.40 >More info -0.50 >More info A. petraea highZn-leaf Original data GEO bulk
57 chito-tetramer 0.69 >More info 0.21 >More info Col Mock Original data GEO bulk
58 roottip hypoxia total 0.57 >More info 0.33 >More info roottip control total Original data GEO bulk
59 ein5-1 ski2-3 0.77 >More info 0.12 >More info Col-0 aerial tissue Original data
60 wrky72-1-MOCK 0.52 >More info 0.37 >More info WT-MOCK Original data GEO bulk
61 lug3 flowers 0.54 >More info 0.34 >More info WT-flowers flowers Original data GEO bulk
62 Col-0 2HS 0.50 >More info 0.38 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
63 Col(gl) 0mM NaCl 0.52 >More info 0.36 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
64 Col(gl) leaf 0mM NaCl 0.52 >More info 0.36 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
65 HMG 0.72 >More info 0.16 >More info Control for tissue data shoot apical meristem Original data GEO bulk
66 rdr1-1 -0.54 >More info -0.33 >More info Col-0 Original data GEO bulk
67 KAN1 0.70 >More info 0.17 >More info Control for tissue data shoot apical meristem Original data GEO bulk
68 wnk8-1 untreated -0.63 >More info -0.24 >More info Col-0 untreated seedlings Original data GEO bulk
69 xyl-grown cell culture- 1h 1mM Glc -0.25 >More info -0.62 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
70 chito-octamer 0.68 >More info 0.18 >More info Col Mock Original data GEO bulk
71 Leaf systemic 0.60 >More info 0.26 >More info Leaf control vegetative leaf Original data GEO bulk
72 Apex octa 18DAS -0.75 >More info -0.11 >More info Apex Col 14DAS Original data GEO bulk
73 HARAP aerobic -0.68 >More info -0.17 >More info WT aerobic aerobic Original data GEO bulk
74 aba2 1% sucrose 12-day-old 0.54 >More info 0.31 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
75 axr1 hypocotyl 0.58 >More info 0.27 >More info wt hypocotyl hypocotyl Original data GEO bulk
76 LAS 0.71 >More info 0.14 >More info Control for tissue data shoot apical meristem Original data GEO bulk
77 WT chitooctaose 0.62 >More info 0.23 >More info WT water Original data GEO bulk
78 max4 hypocotyl 0.62 >More info 0.22 >More info wt hypocotyl hypocotyl Original data GEO bulk
79 IAA/inhibitor B Treated 0.58 >More info 0.26 >More info IAA Treated Original data GEO bulk
80 Cd 18h root -0.55 >More info -0.28 >More info WT-Untreated Root Original data GEO bulk
81 GA 0.64 >More info 0.19 >More info none GA Rosette Original data GEO bulk
82 Atape2 low light 0.68 >More info 0.15 >More info Control for tissue data shoot apical meristem Original data GEO bulk
83 ref6-1 0.52 >More info 0.31 >More info Col whole seedling Original data GEO bulk
84 AtHB8 0.66 >More info 0.17 >More info Control for tissue data shoot apical meristem Original data GEO bulk
85 ABA 24h -0.68 >More info -0.15 >More info EtOH 24h 24hr Original data GEO bulk
86 camta3-1 0.62 >More info 0.20 >More info WT Original data GEO bulk
87 HDG4 0.68 >More info 0.14 >More info Control for tissue data shoot apical meristem Original data GEO bulk
88 Col-0 (t-zeatin 3 h) -0.62 >More info -0.20 >More info Col-0 Original data Cytokinin treatment of seedlings
89 CCA1-ox 6am non-polysomal 0.31 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
90 WT+H2O2 0.71 >More info 0.11 >More info WT H2O2 Original data GEO bulk
91 protoplasts T1 [flg22] 0.57 >More info 0.25 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
92 A. lyrata -0.59 >More info -0.23 >More info A. thaliana mature leaves before flowering Original data GEO bulk
93 atr mock 0.61 >More info 0.21 >More info WT mock shoot apical meristem Original data
94 46T-Dry 0.53 >More info 0.28 >More info WT-Dry dehydration treatment 1h Original data
95 aba1 hypocotyl 0.51 >More info 0.30 >More info Ler hypocotyl hypocotyl Original data GEO bulk
96 toc1-1-81hr 0.76 >More info 0.05 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
97 FLIGHT TAGESB plate6 SHOOTS 0.59 >More info 0.22 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
98 Whole root - low pH 30min 0.56 >More info 0.24 >More info Whole root - Std pH 30min pH 4.6 for 30 min Original data GEO bulk
99 Col0-PsmES4326-24hpi 0.19 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
100 35S:PCO1 hypoxia -0.59 >More info -0.21 >More info WT hypoxia whole rosette Original data
101 IAA/inhibitor A Treated 0.60 >More info 0.19 >More info IAA Treated Original data GEO bulk
102 Col laser microdissected 5 dpi 0.72 >More info 0.07 >More info Col laser microdissected 5d UI LMD leaf epidermal and mesophyll cells Original data GEO bulk
103 bZIP TDNA mutant -0.67 >More info -0.12 >More info Col-WT mature pollen Original data GEO bulk
104 WT drought 0.53 >More info 0.25 >More info WT control All aerial tissue Original data GEO bulk
105 seedling 24h after HZE atm-1 0.73 >More info 0.05 >More info seedling day 2 unirradiated atm-1 24h Original data
106 TA induced 0.65 >More info 0.13 >More info Methanol TA Suspension cells Original data GEO bulk
107 1 h Light Total RNA -0.51 >More info -0.27 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
108 HSP90 Reduced RNAi-B1 0.50 >More info 0.28 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
109 Dark 40min pls UV-AB 5min 0.62 >More info 0.16 >More info Dark 45 min Original data Light treatments
110 S17 0.64 >More info 0.14 >More info Control for tissue data shoot apical meristem Original data GEO bulk
111 Hydrogen Peroxide 500 uM 0.54 >More info 0.24 >More info Control RB and PER Hydrogen Peroxide Original data
112 Chitin 0.63 >More info 0.14 >More info Col C Original data GEO bulk
113 AFB1 0h 0.64 >More info 0.13 >More info Col 0h Leaf Original data GEO bulk
114 Bud 0.64 >More info 0.13 >More info Control for tissue data pollen grains and tubes Original data
115 coi1-2 0.58 >More info 0.19 >More info Col-0 mock Whole seedling Original data GEO bulk
116 amiR-ETP1/2 0.56 >More info 0.21 >More info Col-0 air Original data GEO bulk
117 Cycloheximide 3 h 0.67 >More info 0.10 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
118 ask1 mutant flower buds 0.57 >More info 0.20 >More info Ler WT flower buds unopened flower buds Original data GEO bulk
119 Dex-rga(delta17) 2h GA4 -0.53 >More info -0.24 >More info Vector 4h GA4 shoots Original data GEO bulk
120 tbf1-mock infiltration -0.60 >More info -0.17 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
121 3m.KCl -0.56 >More info -0.20 >More info To. KCl 14 day old Roots Original data GEO bulk
122 irradiated leaf (cmt 5d) 0.60 >More info 0.16 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
123 fri-flc 0.52 >More info 0.24 >More info WT Original data GEO bulk
124 Selenate (root) 0.52 >More info 0.24 >More info Ws (root) Original data GEO bulk
125 seedlings protease IV 0.63 >More info 0.13 >More info seedlings nontreated control whole seedling Original data
126 Root Selenate 0.52 >More info 0.24 >More info Root control 40 micromolar selenate Root Original data GEO bulk
127 SA 24h -0.62 >More info -0.14 >More info EtOH 24h 24hr Original data GEO bulk
128 hsfa1 quadruple mutant 0.51 >More info 0.25 >More info WT (Col-0) whole seedling Original data GEO bulk
129 shoot hypoxia pCER5 0.69 >More info 0.06 >More info shoot hypoxia total Original data GEO bulk
130 hypoxic -0.56 >More info -0.19 >More info WT aerobic hypoxia Original data GEO bulk
131 miR 0h 0.62 >More info 0.13 >More info Col 0h Leaf Original data GEO bulk
132 A. thaliana-A. lyrata hybrid -0.57 >More info -0.18 >More info A. thaliana mature leaves before flowering Original data GEO bulk
133 +1.6 mM Tween 20 1 h. 0.64 >More info 0.11 >More info +distilled water 1 h. Original data GEO bulk
134 Light 3day ivd 0.68 >More info 0.07 >More info 0h ivd Original data
135 M6PR transgenic 0mM NaCl 0.54 >More info 0.20 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
136 anti-sense for AtAOX1a 0.50 >More info 0.24 >More info WT Original data GEO bulk
137 3m.KNO3 -0.56 >More info -0.18 >More info To. KNO3 14 day old Roots Original data GEO bulk
138 WT flg22 2h 0.70 >More info 0.04 >More info WT 0h Leaf tissue Original data GEO bulk
139 Wounding Stress3 h (shoot) 0.60 >More info 0.14 >More info Stress mock 3 h (shoot) Original data Stress treatments
140 rdr6-11 ein5-1 ski2-3 0.56 >More info 0.17 >More info Col-0 aerial tissue Original data
141 T6 leaf-drought -0.57 >More info -0.16 >More info T6 leaf-well watered Original data GEO bulk
142 WT-NOCO2 INFECTED 0.70 >More info 0.03 >More info WT-MOCK Original data GEO bulk
143 Mutant ga1-5 -0.53 >More info -0.20 >More info Ler-1 Original data Comparison of plant hormone related mutant
144 Kas-1 -Fe 24h -0.23 >More info -0.50 >More info Kas-1 +Fe 24h roots Original data GEO bulk
145 Kas -Fe 24h Roots -0.23 >More info -0.50 >More info Kas +Fe 24h Roots Original data GEO bulk
146 pXVE:HA-EDM2-a untreated -0.55 >More info -0.17 >More info Col-0 untreated seedlings Original data GEO bulk
147 wnk8-2 untreated -0.55 >More info -0.17 >More info Col-0 untreated seedlings Original data GEO bulk
148 2hr transitory KNO3 PeR cell -0.53 >More info -0.19 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
149 BLM+INA 0.60 >More info 0.12 >More info CK BLM and INA seedling Original data
150 Col ozone 3h 0.53 >More info 0.19 >More info Col clean-air 3h ozone Original data GEO bulk
151 GiantCell Root -0.50 >More info -0.22 >More info Control Root laser captured giant cells Original data GEO bulk
152 Mutant lfy-12(flower) 0.54 >More info 0.17 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
153 cngc19 0.68 >More info 0.03 >More info Col-0 root Original data GEO bulk
154 hst5 0.64 >More info 0.07 >More info Col-0 Original data GEO bulk
155 mature endodermis glcal 0.64 >More info 0.07 >More info Control for tissue data endodermis Original data GEO bulk
156 root - 08% oxygen - 30min 0.21 >More info 0.50 >More info root - 21% oxygen - 30min Original data GEO bulk
157 CCA14 dark late -0.19 >More info -0.52 >More info Col dark late Original data GEO bulk
158 seedling 24h after HZE WT 0.66 >More info 0.04 >More info seedling day 2 unirradiated WT 24h Original data
159 F1 whole seedlings root 0.54 >More info 0.16 >More info Col whole seedlings root Seedlings Original data GEO bulk
160 atmospheric CO2 low Mg shoot 0.68 >More info 0.02 >More info atmospheric CO2 normal Mg shoot Shoot Original data
161 ubp1c-1/35S:FLAG-UBP1C IP-RNA
2hHypoxia+20&9;Reoxy		 -0.50 >More info -0.20 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA
2hHypoxia+20&9;Reoxy		 2 h hypoxia +2' reoxy seedling Original data
162 pap1-D 0.51 >More info 0.19 >More info Col-0 aerial part Original data
163 WT 90-105 min Xanthomonas 0.62 >More info 0.08 >More info WT T0 Original data GEO bulk
164 er-2 -0.57 >More info -0.13 >More info WT developing inflorescence tips Original data GEO bulk
165 Col-0 drought -0.50 >More info -0.20 >More info Col-0 control Original data GEO bulk
166 myb21 myb24 stage3 -0.53 >More info -0.16 >More info WT stage3 Original data GEO bulk
167 wnk8-3 untreated -0.54 >More info -0.15 >More info Col-0 untreated seedlings Original data GEO bulk
168 Cold Stress 24 h (root) 0.56 >More info 0.13 >More info Stress mock 24 h (root) Original data Stress treatments
169 ex1 flu dark 8hours/30 minute light 0.17 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
170 agb1 -ABA GC -0.62 >More info -0.07 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
171 Col-0 under 4 days salt 0.69 >More info -0.00 >More info Col-0 under control 4 days salt treatment rosette Original data
172 msh1 albino 0.61 >More info 0.08 >More info WT aerial part Original data GEO bulk
173 IAA 3 h 0.51 >More info 0.18 >More info Mock 3 h Original data Basic hormone treatment of seedlings
174 se-1 -0.51 >More info -0.18 >More info Col-0 vegetative apex Original data GEO bulk
175 Lipopolysaccaride4 h (leaf) 0.57 >More info 0.12 >More info Mock 4 h (leaf) Original data Elicitor treatments
176 pericycle control 0.56 >More info 0.12 >More info Control for tissue data mock pericycle Original data GEO bulk
177 T8 leaf-drought -0.54 >More info -0.14 >More info T8 leaf-well watered Original data GEO bulk
178 C24-1h IAA 0.64 >More info 0.04 >More info C24-0h IAA whole plant Original data GEO bulk
179 ubp1c-1/35S:FLAG-UBP1C IP-RNA 2hMockDark -0.51 >More info -0.17 >More info ubp1c-1/35S:FLAG-UBP1C Total-RNA 2hMockDark 2 h mock dark seedling Original data
180 petiole in FRD 0.51 >More info 0.17 >More info petiole in WL petioles Original data GEO bulk
181 camta3-2 0.61 >More info 0.07 >More info WT Original data GEO bulk
182 epidermis control 0.57 >More info 0.11 >More info Control for tissue data mock epidermis Original data GEO bulk
183 20m.KNO3 0.59 >More info 0.09 >More info To. KNO3 14 day old Roots Original data GEO bulk
184 ckh2 CK0 0.53 >More info 0.14 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
185 whole roots 140 mM NaCl 30 minutes 0.52 >More info 0.15 >More info whole roots standard Original data GEO bulk
186 -Sulfate 2 h 0.64 >More info 0.03 >More info Mock 2 h (1500uM sulfate) Original data Response to sulfate limitation
187 cys-c1 leaf 0.51 >More info 0.16 >More info Leaf-WT leaves Original data GEO bulk
188 HSP90 Reduced RNAi-A2 0.51 >More info 0.16 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
189 in vivo pollen tube 0.61 >More info 0.06 >More info Control for tissue data pollen tube Original data GEO bulk
190 calcicole ecotype Cal-0 0.56 >More info 0.10 >More info Col-4 1 mM CaCl2 Original data GEO bulk
191 Mature roots 0.63 >More info 0.03 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
192 root - 01% oxygen - 48h 0.55 >More info 0.11 >More info root - 21% oxygen - 48h Original data GEO bulk
193 2 hr Hypoxia Total RNA 0.50 >More info 0.16 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
194 QC 0.54 >More info 0.12 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
195 inhibitor A Treated 0.54 >More info 0.12 >More info Negative Control Original data GEO bulk
196 sav3-2 light 0.50 >More info 0.16 >More info Col-0 light seedlings Original data GEO bulk
197 Mutant sav3-2 (WL) 0.50 >More info 0.16 >More info Col-0 (WL) Original data GEO bulk
198 root protophloem 40 mM NaCl 0.57 >More info 0.09 >More info root protophloem Original data GEO bulk
199 dorn1-1 Root 100 mM ATP 30 min -0.52 >More info -0.13 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
200 9 hr Hypoxia 1 hr recovery Total RNA 0.50 >More info 0.15 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
201 ABA JA 24h -0.51 >More info -0.14 >More info EtOH 24h 24hr Original data GEO bulk
202 9m.KNO3 0.55 >More info 0.10 >More info To. KNO3 14 day old Roots Original data GEO bulk
203 ckh1 CK200 0.67 >More info -0.02 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
204 col 24h4c set4 -0.52 >More info -0.13 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
205 epiF3 -0.61 >More info -0.04 >More info WT Col-0 aerial part Original data
206 S15-118 0.61 >More info 0.04 >More info wt Original data GEO bulk
207 leaf blade in D 0.51 >More info 0.14 >More info leaf blade in WL leaf blades Original data GEO bulk
208 Bur-0-1h IAA 0.56 >More info 0.09 >More info Bur-0h IAA whole plant Original data GEO bulk
209 columella control 0.60 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
210 Col-0 norflurazon 0.60 >More info 0.04 >More info Col-0 control Original data GEO bulk
211 pepr1-1 Pepr2-3 +Pep2 2h -0.67 >More info 0.03 >More info WT +Pep2 2h Pep2 Original data GEO bulk
212 WT no Pi 0.51 >More info 0.13 >More info WT complete seedlings Original data
213 seedlings-week-old RECA1-overexpressing
transgenic		 0.61 >More info 0.03 >More info seedlings-week-old Col-0 seedlings Original data
214 R. solani AG8 0.55 >More info 0.09 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
215 Col-0 +ABA GC -0.51 >More info -0.12 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
216 GST 4 h (leaf) 0.67 >More info -0.04 >More info Mock 4 h (leaf) Original data Elicitor treatments
217 shoot control pSUC2 -0.60 >More info -0.03 >More info shoot control total Original data GEO bulk
218 S14-150 0.54 >More info 0.08 >More info wt Original data GEO bulk
219 npr1 sni1 ssn2 SA -0.51 >More info -0.11 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
220 HairpinZ 4 h (leaf) 0.65 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
221 +GA-30mins 0.58 >More info 0.04 >More info -30mins whole plant Original data GEO bulk
222 Mutant ap3-6(flower) 0.51 >More info 0.11 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
223 wrky72-1-NOCO2 INFECTED 0.52 >More info 0.09 >More info WT-NOCO2 INFECTED Original data GEO bulk
224 sid2 -0.61 >More info 0.00 >More info Col rosettes Original data GEO bulk
225 Callus 0.53 >More info 0.08 >More info Control for tissue data callus Original data GEO bulk
226 Cor hrpS 24h 0.57 >More info 0.04 >More info Mock 24h Cor hrpS Original data GEO bulk
227 CCA1-ox 12pm large polysomal 0.59 >More info 0.02 >More info WT 12pm large polysomal aerial part Original data
228 whole roots 140 mM NaCl 1 hour 0.53 >More info 0.08 >More info whole roots standard Original data GEO bulk
229 albino Ds13-2198-1 -0.50 >More info -0.11 >More info control Original data GEO bulk
230 Bur-0-3h IAA 0.53 >More info 0.08 >More info Bur-0h IAA whole plant Original data GEO bulk
231 JA 24h -0.53 >More info -0.08 >More info EtOH 24h 24hr Original data GEO bulk
232 ppi2 0.57 >More info 0.04 >More info WT whole plant Original data GEO bulk
233 gun1gun5 far-red pretreated -0.69 >More info 0.08 >More info WT far-red pretreated Original data GEO bulk
234 WUSp cells 0.52 >More info 0.09 >More info Protoplast Induced Original data GEO bulk
235 vte2 leaves 120h LT 0.56 >More info 0.04 >More info Col leaves 120h LT 12h 9-11th adult leaves Original data
236 miR393 flg22 1h 0.53 >More info 0.06 >More info WT 0h Leaf tissue Original data GEO bulk
237 gun1gun5 drak pretreated -0.53 >More info -0.06 >More info WT drak pretreated Original data GEO bulk
238 35S::LFY 0.52 >More info 0.07 >More info Landsberg erecta seedlings Original data GEO bulk
239 CeO2 germinant -0.52 >More info -0.07 >More info Millipore Water germinant CeO2 seedling Original data
240 C24-3h IAA 0.56 >More info 0.03 >More info C24-0h IAA whole plant Original data GEO bulk
241 Bur-0-30min IAA 0.52 >More info 0.07 >More info Bur-0h IAA whole plant Original data GEO bulk
242 Imbibed 1 h (seed) 0.03 >More info 0.56 >More info Dry seed Original data Time course of early seed germination
243 aba3-1 0.61 >More info -0.02 >More info wt Original data GEO bulk
244 Distal half (leaf7) 0.50 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
245 Hypocotyl 0.50 >More info 0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
246 FAMA induced 4h -0.61 >More info 0.02 >More info control 4h Whole seedling Original data GEO bulk
247 Col-0-3h IAA 0.58 >More info 0.01 >More info Col-0-0h IAA whole plant Original data GEO bulk
248 WT flg22 1h 0.58 >More info 0.01 >More info WT 0h Leaf tissue Original data GEO bulk
249 MYB51 OE -0.57 >More info -0.02 >More info WT for ATR1/MYB51 Original data GEO bulk
250 GR-REV 120min 0.50 >More info 0.09 >More info Col 120min Original data GEO bulk
251 Col-0 0h NAA -0.51 >More info -0.07 >More info Col-0 6h MOCK Original data GEO bulk
252 camta1/3 warm 0.53 >More info 0.05 >More info WT warm entire aerial part Original data GEO bulk
253 phloem sieve cells and companion cells 0.52 >More info 0.06 >More info Control for tissue data phloem Original data GEO bulk
254 tor mutant glucose 0.51 >More info 0.07 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
255 shoots bhlh100/101 100uM Fe 0.54 >More info 0.04 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
256 35S::ERF104 H2O 4h 0.59 >More info -0.01 >More info Col-0 H2O 4h Original data GEO bulk
257 Col-0-30min IAA 0.57 >More info 0.01 >More info Col-0-0h IAA whole plant Original data GEO bulk
258 vtc1 (II) 0.58 >More info 0.00 >More info Col (II) rosette Original data GEO bulk
259 cortex 0.55 >More info 0.02 >More info Control for tissue data cortex Original data GEO bulk
260 amiRAP aerobic -0.52 >More info -0.05 >More info WT aerobic aerobic Original data GEO bulk
261 UV Stress 24 h (shoot) 0.53 >More info 0.04 >More info Stress mock 24 h (shoot) Original data Stress treatments
262 root cells columella root cap -Fe 0.50 >More info 0.07 >More info whole roots standard Original data GEO bulk
263 Mutant NahG(leaf) -0.52 >More info -0.05 >More info Col-0 (leaf) Original data GEO bulk
264 ms35 silique stage 7 -0.06 >More info -0.51 >More info Ler 6.7 anther and filament Original data GEO bulk
265 upf1 0.62 >More info -0.05 >More info WT whole plant Original data GEO bulk
266 bio4-1 mutant watered00µM biotin leaves -0.60 >More info 0.03 >More info bio4-1 mutant leaves leaves Original data GEO bulk
267 cca1-lhy before light -0.59 >More info 0.02 >More info before light whole seedlings Original data GEO bulk
268 ga1 KAR1 24h seed 0.57 >More info -0.00 >More info Ler KAR1 24h seed KAR1 seed Original data GEO bulk
269 root epidermis and lateral root cap -S -0.62 >More info 0.05 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
270 mbd4 mutant thaliana 10-day-old seedling 0.55 >More info 0.01 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
271 NahG -0.52 >More info -0.04 >More info Col-0 Leaves Original data GEO bulk
272 Mutant siz1-3 (Drought) 0.63 >More info -0.07 >More info Col-0 (Drought) Original data GEO bulk
273 eds16 laser microdissected 5 dpi -0.52 >More info -0.04 >More info Col laser microdissected 5 dpi LMD leaf epidermal and mesophyll cells Original data GEO bulk
274 AgNO3 3 h 0.54 >More info 0.02 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
275 siz1-3 drought 0.63 >More info -0.07 >More info Col-0 drought Original data GEO bulk
276 DUO1 induced 12h -0.60 >More info 0.04 >More info 12hr-not-induced whole plant Original data GEO bulk
277 Elevated CO2 AMPLE N NIGHT 0.53 >More info 0.02 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
278 gai MeJA 1h -0.55 >More info 0.00 >More info Laer MeJA 1h leaf discs Original data GEO bulk
279 GST NPP1 4 h (leaf) 0.65 >More info -0.10 >More info Mock 4 h (leaf) Original data Elicitor treatments
280 Bay-0-30min IAA 0.54 >More info 0.01 >More info Bay-0-0h IAA whole plant Original data GEO bulk
281 grf1/grf2/grf3 0.52 >More info 0.03 >More info WS Original data GEO bulk
282 IAA 1h -0.50 >More info -0.05 >More info control 1h root Original data GEO bulk
283 csn4-1 mutant 0.50 >More info 0.05 >More info WT dark Original data GEO bulk
284 Ler hypocotyl 0.55 >More info -0.00 >More info wt hypocotyl hypocotyl Original data GEO bulk
285 Octopus mutant DYG25 -0.51 >More info -0.04 >More info WS Original data GEO bulk
286 coi1-16 ein2 sid2 ozone 0.56 >More info -0.01 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
287 FHY3p dark+DEX -0.55 >More info -0.00 >More info FHY3p dark+mock Original data GEO bulk
288 AFB1 flg22 1h 0.51 >More info 0.04 >More info WT 0h Leaf tissue Original data GEO bulk
289 pepr1-1 Pepr2-3 +Pep2 10h -0.60 >More info 0.05 >More info WT +Pep2 10h Pep2 Original data GEO bulk
290 wavy 0.51 >More info 0.03 >More info WT Original data GEO bulk
291 Dex-rga(delta17) 4h GA4+DEX -0.56 >More info 0.02 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
292 0h hml 0.50 >More info 0.04 >More info 0h wt Original data
293 WT NAA/flg 1h 0.53 >More info 0.01 >More info WT 0h Leaf tissue Original data GEO bulk
294 ataf1-1 mutant Col-0 Bgh inoculated 0.58 >More info -0.04 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
295 Transgenic LEC2GR Seedling 1h Dex 0.50 >More info 0.03 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
296 Apex BLS>>TCP4 14DAS -0.52 >More info -0.01 >More info Apex Col 14DAS Original data GEO bulk
297 Stem tissue 5 days NAA 0.60 >More info -0.07 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
298 erf104-ko H2O 4h 0.53 >More info 0.00 >More info Col-0 H2O 4h Original data GEO bulk
299 coi1-16 ein2 sid2 ctrl -0.51 >More info -0.02 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
300 gun5 control 0.62 >More info -0.09 >More info Col-0 control Original data GEO bulk
301 CDB1-Knockout 0.01 >More info -0.54 >More info WT Original data GEO bulk
302 smg7b-1 0.57 >More info -0.04 >More info WT whole plant Original data GEO bulk
303 irradiated leaf (WT 1d) 0.50 >More info 0.02 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
304 Petals stage15 0.51 >More info 0.01 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
305 CMV-WT 0.55 >More info -0.03 >More info Mock-At Aerial tissues Original data GEO bulk
306 Col-0-1h IAA 0.55 >More info -0.03 >More info Col-0-0h IAA whole plant Original data GEO bulk
307 xrn4-5 flower -0.51 >More info -0.01 >More info Col-0 flower inflorescence Original data GEO bulk
308 OXUPB1-2 meristematic zone -0.56 >More info 0.04 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
309 seedling 24h after Gamma WT 0.65 >More info -0.13 >More info seedling day 2 unirradiated WT 24h Original data
310 Blue Light 45 min -0.01 >More info -0.51 >More info White Light 45min Original data Light treatments
311 WT +elf18 2h 0.57 >More info -0.05 >More info WT untreated elf18 Original data GEO bulk
312 CLO 4mM 0.50 >More info 0.01 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
313 clf-28 -0.53 >More info 0.02 >More info Col whole plant Original data GEO bulk
314 WT 2-4h Xanthomonas 0.54 >More info -0.03 >More info WT T0 Original data GEO bulk
315 endosperm paclobutrazol -0.57 >More info 0.06 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
316 miR393 flg22 2h 0.57 >More info -0.06 >More info WT 0h Leaf tissue Original data GEO bulk
317 cpr5 0.51 >More info 0.00 >More info WT(COL) Original data GEO bulk
318 oas-a1.1 Cd 18h 0.56 >More info -0.06 >More info Cd 18h root Root Original data GEO bulk
319 phyB mutant 16C 10hrs -0.54 >More info 0.04 >More info 16C 10h whole plant excluding roots Original data GEO bulk
320 spx1 spx2 resupplied Pi 4h -0.74 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
321 QC pSCR(QC pSCRBRI1) 8h BL -0.59 >More info 0.09 >More info QC pSCR(QC pSCRBRI1) 0h BL brassinosteroid root Original data
322 bri1-116 -0.23 >More info 0.73 >More info Col seedling Original data GEO bulk
323 Col-0 INA 48h 0.52 >More info -0.03 >More info Col-0 MOCK 48h Original data GEO bulk
324 E.coli TUV86 2 fliC 7h 0.59 >More info -0.10 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
325 vte2-1 3d vernalization 0.52 >More info -0.03 >More info WT 3d vernalization Original data GEO bulk
326 24h light (+Lincomycin) 0.51 >More info -0.02 >More info 24h light (-Lincomycin) seedlings Original data GEO bulk
327 Dex-rga(delta17) 2h GA4+DEX -0.53 >More info 0.05 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
328 ams 0.53 >More info -0.05 >More info WT anther Original data GEO bulk
329 tcp13 -0.07 >More info 0.55 >More info WT inflorescences Original data GEO bulk
330 WT NAA/flg 2h 0.58 >More info -0.10 >More info WT 0h Leaf tissue Original data GEO bulk
331 Flagellin 4 h (leaf) 0.60 >More info -0.12 >More info Mock 4 h (leaf) Original data Elicitor treatments
332 psae1-3 stn7-1 0.52 >More info -0.05 >More info WS rosette leaves Original data GEO bulk
333 cat2-hCO2 -0.53 >More info 0.06 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
334 bio4-1 mutant leaves 0.51 >More info -0.04 >More info WT leaves leaves Original data GEO bulk
335 sid2-1 cold -0.54 >More info 0.07 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
336 Elevated CO2 expanding leaf 0.53 >More info -0.06 >More info Ambient CO2 expanding leaf expanding leaf Original data
337 ein2-1 9 hpi A. brassicicola 0.50 >More info -0.03 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
338 root stele -S -0.59 >More info 0.12 >More info root stele pH5.7 Original data GEO bulk
339 35S:RPS4 eds1-2 24h -0.55 >More info 0.09 >More info 35S:RPS4 24h leaves Original data
340 downy mildew cotyledons late stage 0.56 >More info -0.10 >More info mock inoculated Cotyledons Original data GEO bulk
341 Roots Cd -0.66 >More info 0.20 >More info Roots control Cd Root Original data GEO bulk
342 tor mutant 0.54 >More info -0.08 >More info WT (Col) none seedlings Original data GEO bulk
343 C24 ozone 0.50 >More info -0.04 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
344 LTN008-2 aza-dc 0.53 >More info -0.07 >More info LTN012-2 Mock Original data
345 WT powdery mildew 0.53 >More info -0.07 >More info WT control inoculation with the powdery mildew pathogen Original data GEO bulk
346 pif3 Dark 0h -0.60 >More info 0.14 >More info WT Dark 0h etiolated seedling Original data GEO bulk
347 upf3 0.54 >More info -0.09 >More info WT whole plant Original data GEO bulk
348 frb1 mutant 0.54 >More info -0.10 >More info WT whole seedling Original data GEO bulk
349 Stem tissue 2 days NAA 0.57 >More info -0.13 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
350 Ba1 UV 0.14 >More info -0.58 >More info Ba1 mock UV seedling Original data
351 sex1-3 0.53 >More info -0.10 >More info Col-WT leaves Original data GEO bulk
352 toc1-1-57hr 0.50 >More info -0.07 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
353 gct-2 mutant 9-day-old seedlings above-ground
portions		 0.50 >More info -0.07 >More info WT 7-day-old seedlings above-ground portions seedling Original data
354 hrpA 7h 0.58 >More info -0.15 >More info Mock 7h hrpA Original data GEO bulk
355 IAA7mII over-expressor IAA Treated -0.26 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
356 AFB1 flg22 2h 0.53 >More info -0.11 >More info WT 0h Leaf tissue Original data GEO bulk
357 red illumination +lincomycin 0.56 >More info -0.14 >More info red illumination -lincomycin Original data GEO bulk
358 CabpBVR2 0.58 >More info -0.16 >More info WT Original data GEO bulk
359 Laer pretreat GA Flg22 0h 0.54 >More info -0.13 >More info Laer pretreat water control leaf discs Original data GEO bulk
360 Col-0 V. longisporum-inoculated 48 hpi 0.50 >More info -0.09 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
361 seedling 24h after Gamma atm-1 0.54 >More info -0.13 >More info seedling day 2 unirradiated atm-1 24h Original data
362 ISOXABEN -0.52 >More info 0.11 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
363 tcp13/+ tcp14/+ -0.11 >More info 0.52 >More info WT inflorescences Original data GEO bulk
364 gh3.5-1D 48 hpi 0.54 >More info -0.14 >More info Col-0 uninoculated Original data GEO bulk
365 Col whole leaf 5dpi 0.50 >More info -0.10 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
366 2hr continuous KNO3 LRCR cell -0.52 >More info 0.13 >More info 2hr KCl control LRCR cell Lateral Root Cap root cells Original data GEO bulk
367 wrky33 Bc inoculation 14h 0.51 >More info -0.13 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
368 roottip control pSCR 0.56 >More info -0.20 >More info roottip control total control roottip Original data GEO bulk
369 PNO8 12 h -0.50 >More info 0.16 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
370 ago4-1 0.50 >More info -0.19 >More info WT La-er whole plants Original data GEO bulk
371 toc1-1-69hr 0.50 >More info -0.25 >More info WT-untreated-69hr none seedlings aerial tissue Original data GEO bulk
372 pistil 0.5HAP 0.52 >More info -0.30 >More info unpollinated pistil pistil Original data GEO bulk
373 rdr6-15 -0.57 >More info 0.39 >More info Col-0 Original data GEO bulk
374 GRX-overexpression seedlings MV -0.51 >More info 0.35 >More info WT seedlings MV Seedlings Original data GEO bulk
375 SA 4mM 0.43 >More info -0.55 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
376 ARR22-ox -0.52 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings